Wall clock time and date at job start Sat Apr 11 2020 06:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.87117 * 2 1 4 4 C 1.54314 * 109.88618 * 121.17969 * 2 1 3 5 5 H 1.08995 * 110.72008 * 23.24731 * 4 2 1 6 6 N 1.46502 * 110.72158 * 259.97472 * 4 2 1 7 7 C 1.36940 * 119.99901 * 155.00171 * 6 4 2 8 8 H 1.07992 * 120.00381 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99652 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00157 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99912 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47216 * 59.99356 * 11 9 7 13 13 H 1.48493 * 109.47422 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47021 * 299.99613 * 11 9 7 15 15 C 1.55158 * 102.94500 * 141.60956 * 4 2 1 16 16 C 1.54909 * 101.58072 * 324.50184 * 15 4 2 17 17 N 1.47017 * 109.88130 * 238.99236 * 2 1 3 18 18 C 1.34778 * 125.65096 * 61.65931 * 17 2 1 19 19 O 1.21695 * 120.00125 * 357.79912 * 18 17 2 20 20 C 1.46664 * 119.99943 * 177.79933 * 18 17 2 21 21 C 1.37828 * 126.81671 * 187.71269 * 20 18 17 22 22 N 1.32968 * 107.99142 * 179.97438 * 21 20 18 23 23 C 1.31803 * 109.76865 * 359.97438 * 22 21 20 24 24 C 1.47826 * 125.50259 * 179.97438 * 23 22 21 25 25 C 1.39584 * 120.14023 * 179.74910 * 24 23 22 26 26 C 1.37960 * 119.84757 * 179.72393 * 25 24 23 27 27 C 1.38357 * 120.14670 * 0.57830 * 26 25 24 28 28 C 1.38358 * 120.29564 * 359.69201 * 27 26 25 29 29 C 1.37958 * 120.14668 * 0.02562 * 28 27 26 30 30 N 1.35903 * 108.98861 * 359.75405 * 23 22 21 31 31 H 0.96993 * 126.55917 * 180.28057 * 30 23 22 32 32 H 1.08998 * 109.47122 * 179.56171 * 1 2 3 33 33 H 1.09008 * 109.46901 * 299.55261 * 1 2 3 34 34 H 1.08997 * 109.47296 * 59.55313 * 1 2 3 35 35 H 0.96999 * 120.00127 * 334.99778 * 6 4 2 36 36 H 0.97001 * 119.99938 * 180.02562 * 10 9 7 37 37 H 1.08999 * 111.00750 * 206.42490 * 15 4 2 38 38 H 1.09001 * 111.00218 * 82.57493 * 15 4 2 39 39 H 1.09001 * 110.36352 * 278.17211 * 16 15 4 40 40 H 1.08999 * 110.36751 * 155.84478 * 16 15 4 41 41 H 1.08004 * 126.00976 * 359.94325 * 21 20 18 42 42 H 1.07999 * 120.07606 * 0.02562 * 25 24 23 43 43 H 1.08003 * 119.92543 * 180.29302 * 26 25 24 44 44 H 1.07998 * 119.85323 * 179.72420 * 27 26 25 45 45 H 1.07995 * 119.92944 * 180.02562 * 28 27 26 46 46 H 1.07994 * 120.08057 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7513 1.2415 5 1 1.3052 -1.4482 1.6160 6 7 2.4555 0.1928 2.2877 7 6 2.4584 -0.1998 3.5996 8 1 2.1649 -1.2051 3.8631 9 6 2.8375 0.6949 4.5909 10 7 3.1947 1.9203 4.2699 11 14 2.8407 0.1597 6.3806 12 1 3.7724 -0.9836 6.5537 13 1 3.2823 1.2912 7.2349 14 1 1.4705 -0.2542 6.7759 15 6 3.2877 -1.5152 0.6900 16 6 2.8146 -1.8782 -0.7397 17 7 2.0300 -0.7122 -1.1850 18 6 1.8082 -0.3577 -2.4662 19 8 1.1095 0.6062 -2.7187 20 6 2.4089 -1.1336 -3.5563 21 6 2.4003 -0.8170 -4.8977 22 7 3.0511 -1.7755 -5.5501 23 6 3.4751 -2.6866 -4.6972 24 6 4.2375 -3.9032 -5.0490 25 6 4.6364 -4.7936 -4.0508 26 6 5.3428 -5.9300 -4.3866 27 6 5.6663 -6.1820 -5.7080 28 6 5.2789 -5.3006 -6.7017 29 6 4.5671 -4.1634 -6.3802 30 7 3.1022 -2.3243 -3.4415 31 1 3.2855 -2.8093 -2.6218 32 1 -0.3633 -1.0276 -0.0079 33 1 -0.3633 0.5069 0.8940 34 1 -0.3634 0.5207 -0.8859 35 1 2.7188 1.0959 2.0511 36 1 3.4599 2.5454 4.9626 37 1 3.4853 -2.4128 1.2759 38 1 4.1655 -0.8697 0.6590 39 1 2.1886 -2.7703 -0.7170 40 1 3.6716 -2.0316 -1.3954 41 1 1.9445 0.0560 -5.3412 42 1 4.3883 -4.5958 -3.0184 43 1 5.6479 -6.6222 -3.6157 44 1 6.2234 -7.0708 -5.9650 45 1 5.5343 -5.5033 -7.7312 46 1 4.2649 -3.4765 -7.1568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987091663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:34 Heat of formation + Delta-G solvation = 55.801237 kcal Electronic energy + Delta-G solvation = -28681.408791 eV Core-core repulsion = 24764.634831 eV Total energy + Delta-G solvation = -3916.773959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.33700 -41.14260 -39.79408 -38.83935 -36.06707 -34.38546 -33.40583 -33.01307 -32.31690 -31.80750 -31.01003 -29.54985 -27.00698 -25.50074 -25.07451 -24.06689 -23.58906 -22.54910 -22.26982 -21.36246 -20.93769 -19.28244 -18.85553 -18.09280 -17.58170 -17.03254 -16.73042 -16.66889 -16.22660 -16.03257 -15.68048 -15.40614 -15.33986 -14.97947 -14.90397 -14.55174 -14.45413 -14.29571 -14.19536 -13.75058 -13.64931 -13.39110 -13.18351 -12.94663 -12.70647 -12.59780 -12.32984 -12.25231 -12.17842 -12.04754 -11.76501 -11.67217 -11.59116 -11.39970 -11.13369 -10.92029 -10.62344 -9.91662 -9.90929 -9.08931 -9.05676 -7.94904 -5.25450 -0.38699 0.45318 0.51470 1.46649 1.50241 1.52006 1.57932 1.74385 1.82300 2.13763 2.56562 2.92116 3.02797 3.29194 3.37564 3.53220 3.67082 3.79300 3.86495 3.98577 4.07719 4.10174 4.17122 4.19826 4.27058 4.29857 4.38705 4.43777 4.49522 4.53819 4.60165 4.66903 4.79055 4.90558 4.98120 5.12410 5.13530 5.17170 5.21824 5.29797 5.36692 5.48218 5.50034 5.53320 5.58654 5.97014 6.05033 6.24228 6.28379 6.66959 6.87591 7.31614 8.02522 8.26162 9.28182 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.002472 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.182437 B =11323.939984 C =12791.321859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.133 3.867 3 H 0.050 0.950 4 C 0.173 3.827 5 H 0.079 0.921 6 N -0.727 5.727 7 C -0.238 4.238 8 H 0.086 0.914 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.274 1.274 13 H -0.302 1.302 14 H -0.277 1.277 15 C -0.144 4.144 16 C 0.090 3.910 17 N -0.607 5.607 18 C 0.606 3.394 19 O -0.560 6.560 20 C -0.084 4.084 21 C 0.066 3.934 22 N -0.501 5.501 23 C 0.279 3.721 24 C -0.048 4.048 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.104 4.104 28 C -0.122 4.122 29 C -0.087 4.087 30 N -0.539 5.539 31 H 0.435 0.565 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.371 0.629 36 H 0.250 0.750 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.193 0.807 42 H 0.135 0.865 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.150 0.850 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.155 -20.371 -20.210 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.028 3.972 3 H 0.068 0.932 4 C 0.063 3.937 5 H 0.097 0.903 6 N -0.366 5.366 7 C -0.369 4.369 8 H 0.103 0.897 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.802 3.198 12 H -0.200 1.200 13 H -0.229 1.229 14 H -0.204 1.204 15 C -0.185 4.185 16 C -0.033 4.033 17 N -0.339 5.339 18 C 0.396 3.604 19 O -0.439 6.439 20 C -0.201 4.201 21 C -0.089 4.089 22 N -0.220 5.220 23 C 0.019 3.981 24 C -0.050 4.050 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.122 4.122 28 C -0.140 4.140 29 C -0.106 4.106 30 N -0.150 5.150 31 H 0.283 0.717 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.203 0.797 36 H 0.059 0.941 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.210 0.790 42 H 0.152 0.848 43 H 0.171 0.829 44 H 0.171 0.829 45 H 0.168 0.832 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.830 -19.917 -21.015 29.206 hybrid contribution -0.004 0.905 2.257 2.432 sum 3.825 -19.012 -18.757 26.980 Atomic orbital electron populations 1.21954 0.93872 1.02571 1.01969 1.21767 0.95190 0.95647 0.84548 0.93168 1.21421 0.94885 0.91100 0.86293 0.90330 1.42502 1.79574 1.12107 1.02406 1.19585 1.36391 0.97108 0.83859 0.89662 1.25583 1.02885 0.96064 1.02188 1.69823 1.53155 1.05896 1.33212 0.85221 0.78032 0.76585 0.79953 1.20028 1.22871 1.20355 1.23405 0.99327 1.01924 0.93864 1.22794 0.95144 0.88953 0.96367 1.48454 1.52082 1.29076 1.04317 1.16644 0.80092 0.83228 0.80465 1.90823 1.40344 1.29407 1.83360 1.21168 1.09774 0.92491 0.96678 1.23102 0.98580 0.99087 0.88180 1.70286 1.15816 1.03321 1.32596 1.21844 0.99530 0.96574 0.80133 1.17777 1.00654 0.91057 0.95546 1.21355 0.98533 0.94586 0.98637 1.21405 0.97736 0.96792 0.97757 1.21744 0.98013 0.99790 0.92653 1.21449 0.97670 0.93561 1.01318 1.21340 0.96772 0.97836 0.94697 1.44037 1.41497 1.18818 1.10628 0.71718 0.91182 0.91964 0.92720 0.79664 0.94113 0.88166 0.92327 0.87751 0.89862 0.78971 0.84752 0.82872 0.82905 0.83193 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 9.10 71.98 0.66 -4.06 16 2 C 0.13 4.54 3.22 45.34 0.15 4.68 16 3 H 0.05 2.04 7.72 -2.38 -0.02 2.02 16 4 C 0.17 6.08 3.14 46.18 0.14 6.22 16 5 H 0.08 2.65 7.80 -2.39 -0.02 2.63 16 6 N -0.73 -34.19 5.22 -317.34 -1.66 -35.85 16 7 C -0.24 -12.23 9.96 84.03 0.84 -11.39 16 8 H 0.09 4.07 7.83 -2.91 -0.02 4.05 16 9 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 10 N -0.97 -58.09 13.06 21.65 0.28 -57.81 16 11 Si 0.97 44.15 29.55 68.60 2.03 46.18 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 15 C -0.14 -4.01 6.77 31.99 0.22 -3.80 16 16 C 0.09 1.90 5.53 86.85 0.48 2.38 16 17 N -0.61 -17.58 3.06 -792.74 -2.43 -20.00 16 18 C 0.61 19.12 7.62 86.44 0.66 19.78 16 19 O -0.56 -21.45 15.88 -4.33 -0.07 -21.52 16 20 C -0.08 -2.24 6.88 40.23 0.28 -1.96 16 21 C 0.07 1.78 11.70 84.42 0.99 2.76 16 22 N -0.50 -13.02 10.79 -187.95 -2.03 -15.05 16 23 C 0.28 6.15 7.74 136.59 1.06 7.21 16 24 C -0.05 -0.84 5.87 -20.09 -0.12 -0.96 16 25 C -0.11 -1.39 9.69 22.53 0.22 -1.17 16 26 C -0.12 -1.09 10.03 22.23 0.22 -0.87 16 27 C -0.10 -0.87 10.04 22.33 0.22 -0.65 16 28 C -0.12 -1.30 10.03 22.23 0.22 -1.08 16 29 C -0.09 -1.37 9.69 22.53 0.22 -1.15 16 30 N -0.54 -10.99 5.37 -176.46 -0.95 -11.93 16 31 H 0.43 6.42 4.46 -92.71 -0.41 6.01 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.05 1.88 6.81 -2.39 -0.02 1.86 16 35 H 0.37 19.56 7.57 -92.71 -0.70 18.86 16 36 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.42 5.48 -2.39 -0.01 1.41 16 41 H 0.19 4.70 8.06 -2.91 -0.02 4.67 16 42 H 0.13 1.13 7.14 -2.91 -0.02 1.11 16 43 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.15 0.45 8.06 -2.91 -0.02 0.43 16 45 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 46 H 0.13 2.20 7.82 -2.91 -0.02 2.17 16 Total: -1.00 -71.15 380.66 2.01 -69.15 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.09 Total: 34.55 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 6.92 Total: 12.29 kcal Atomic # 7 Polarization: -133.86 SS G_CDS: -6.78 Total: -140.64 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.07 Total: -21.52 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -71.15 2.01 -69.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987091663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.949 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds