Wall clock time and date at job start Sat Apr 11 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58445 * 2 1 4 4 C 1.53196 * 109.58674 * 120.42577 * 2 1 3 5 5 H 1.09002 * 109.50073 * 54.47150 * 4 2 1 6 6 N 1.46501 * 109.49639 * 294.40553 * 4 2 1 7 7 C 1.34775 * 119.99825 * 154.99680 * 6 4 2 8 8 O 1.21542 * 120.00248 * 0.02562 * 7 6 4 9 9 C 1.47893 * 120.00149 * 179.97438 * 7 6 4 10 10 N 1.32140 * 120.03312 * 359.73055 * 9 7 6 11 11 C 1.31983 * 122.77256 * 179.69715 * 10 9 7 12 12 C 1.37774 * 121.72469 * 0.58379 * 11 10 9 13 13 C 1.40393 * 118.73057 * 359.72045 * 12 11 10 14 14 C 1.40637 * 122.28227 * 180.02562 * 13 12 11 15 15 C 1.36647 * 117.95586 * 179.97438 * 14 13 12 16 16 C 1.39403 * 119.92074 * 0.02562 * 15 14 13 17 17 N 1.31206 * 121.85328 * 359.97438 * 16 15 14 18 18 C 1.33261 * 121.22269 * 359.97438 * 17 16 15 19 19 C 1.53039 * 109.31257 * 174.42600 * 4 2 1 20 20 C 1.53046 * 109.53568 * 298.63222 * 19 4 2 21 21 C 1.52757 * 109.38448 * 61.24329 * 20 19 4 22 22 N 1.46925 * 109.58997 * 239.71337 * 2 1 3 23 23 C 1.36946 * 120.62883 * 6.58045 * 22 2 1 24 24 H 1.07994 * 119.99511 * 329.91356 * 23 22 2 25 25 C 1.38812 * 119.99804 * 149.91217 * 23 22 2 26 26 N 1.31616 * 119.99853 * 145.16151 * 25 23 22 27 27 Si 1.86805 * 120.00003 * 325.15898 * 25 23 22 28 28 H 1.48501 * 109.47085 * 269.99968 * 27 25 23 29 29 H 1.48501 * 109.46827 * 150.00198 * 27 25 23 30 30 H 1.48502 * 109.46974 * 30.00324 * 27 25 23 31 31 H 1.09000 * 109.46823 * 180.28722 * 1 2 3 32 32 H 1.08993 * 109.47398 * 300.28257 * 1 2 3 33 33 H 1.08999 * 109.46985 * 60.29117 * 1 2 3 34 34 H 0.96995 * 120.00161 * 335.00490 * 6 4 2 35 35 H 1.07996 * 119.13632 * 180.30469 * 11 10 9 36 36 H 1.07999 * 120.63863 * 179.73966 * 12 11 10 37 37 H 1.08002 * 121.02251 * 0.02562 * 14 13 12 38 38 H 1.07994 * 120.04054 * 180.02562 * 15 14 13 39 39 H 1.08002 * 119.07097 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.46464 * 58.65463 * 19 4 2 41 41 H 1.09000 * 109.45712 * 178.61555 * 19 4 2 42 42 H 1.09004 * 109.49512 * 181.31861 * 20 19 4 43 43 H 1.08999 * 109.49748 * 301.41458 * 20 19 4 44 44 H 1.08996 * 109.51031 * 185.70629 * 21 20 19 45 45 H 1.09004 * 109.43297 * 65.41863 * 21 20 19 46 46 H 0.97000 * 120.00001 * 355.30907 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7309 1.2445 5 1 1.6030 -1.7269 1.2893 6 7 1.6699 0.0233 2.4436 7 6 1.5464 -0.6100 3.6268 8 8 1.7456 -1.8068 3.6993 9 6 1.1697 0.1514 4.8374 10 7 0.9592 1.4537 4.7608 11 6 0.6155 2.1845 5.8046 12 6 0.4638 1.6319 7.0576 13 6 0.6770 0.2535 7.2175 14 6 0.5423 -0.3880 8.4618 15 6 0.7702 -1.7342 8.5164 16 6 1.1246 -2.4270 7.3598 17 7 1.2488 -1.8231 6.2016 18 6 1.0396 -0.5126 6.0799 19 6 3.5675 -0.8493 1.1692 20 6 3.9569 -1.6656 -0.0655 21 6 3.4645 -0.9503 -1.3222 22 7 2.0226 -0.6981 -1.1953 23 6 1.1537 -1.1109 -2.1699 24 1 0.1411 -1.3826 -1.9107 25 6 1.5745 -1.1802 -3.4909 26 7 1.1138 -2.1279 -4.2795 27 14 2.7945 0.0718 -4.1494 28 1 2.0582 1.2356 -4.7050 29 1 3.6147 -0.5515 -5.2189 30 1 3.6804 0.5265 -3.0477 31 1 -0.3633 -1.0277 0.0052 32 1 -0.3634 0.5182 0.8874 33 1 -0.3633 0.5093 -0.8926 34 1 1.5112 0.9785 2.3859 35 1 0.4531 3.2442 5.6741 36 1 0.1860 2.2472 7.9005 37 1 0.2664 0.1662 9.3468 38 1 0.6759 -2.2608 9.4545 39 1 1.3020 -3.4907 7.4188 40 1 4.0061 0.1460 1.0996 41 1 3.9378 -1.3473 2.0653 42 1 5.0413 -1.7694 -0.1058 43 1 3.4984 -2.6528 -0.0084 44 1 3.6505 -1.5771 -2.1943 45 1 3.9929 -0.0031 -1.4309 46 1 0.5338 -2.8178 -3.9209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993441286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:18 Heat of formation + Delta-G solvation = 65.541341 kcal Electronic energy + Delta-G solvation = -29472.261407 eV Core-core repulsion = 25555.909811 eV Total energy + Delta-G solvation = -3916.351597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.60515 -39.56566 -38.33778 -37.60844 -34.31969 -34.03685 -32.72140 -31.93181 -31.62002 -30.91321 -29.56389 -26.47497 -25.62858 -24.59583 -24.43428 -23.76300 -22.05099 -20.73503 -20.38417 -19.64353 -18.91849 -17.87741 -17.82482 -16.94130 -16.48152 -15.82440 -15.49103 -15.09663 -14.74500 -14.67678 -14.46564 -14.36562 -14.11995 -13.56254 -13.51143 -13.40026 -13.33688 -13.13755 -12.86885 -12.58808 -12.41098 -11.92038 -11.55524 -11.38920 -11.17866 -11.09123 -10.62301 -10.42120 -10.36265 -10.31331 -10.19880 -10.12400 -9.75228 -9.72676 -9.48955 -9.30800 -9.12209 -8.84575 -8.59678 -8.19789 -6.92046 -6.28752 -3.21339 -0.39863 0.31556 1.32115 2.44248 3.13108 3.14280 3.56682 3.61897 3.76729 3.81930 3.85973 3.93406 4.09518 4.23694 4.36433 4.41638 4.71427 4.74448 4.95179 4.99443 5.05009 5.16552 5.23937 5.35571 5.45091 5.48244 5.55758 5.66870 5.69119 5.85813 5.91206 6.01505 6.14565 6.18839 6.29921 6.40231 6.41699 6.52396 6.59632 6.64569 6.75382 6.91805 6.93447 7.03193 7.16883 7.29202 7.57183 7.85663 8.16594 8.46288 8.53029 9.09853 9.70561 10.30627 11.10791 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.002680 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.628745 B =10444.484626 C =10837.521996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.167 3.833 3 H 0.031 0.969 4 C 0.132 3.868 5 H 0.089 0.911 6 N -0.701 5.701 7 C 0.560 3.440 8 O -0.495 6.495 9 C 0.149 3.851 10 N -0.444 5.444 11 C 0.076 3.924 12 C -0.127 4.127 13 C -0.084 4.084 14 C -0.065 4.065 15 C -0.155 4.155 16 C 0.130 3.870 17 N -0.418 5.418 18 C 0.105 3.895 19 C -0.118 4.118 20 C -0.135 4.135 21 C 0.140 3.860 22 N -0.590 5.590 23 C -0.358 4.358 24 H 0.070 0.930 25 C 0.005 3.995 26 N -0.901 5.901 27 Si 1.016 2.984 28 H -0.299 1.299 29 H -0.295 1.295 30 H -0.268 1.268 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.405 0.595 35 H 0.167 0.833 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.030 0.970 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 7.410 28.451 29.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.059 3.941 3 H 0.048 0.952 4 C 0.026 3.974 5 H 0.107 0.893 6 N -0.352 5.352 7 C 0.342 3.658 8 O -0.367 6.367 9 C -0.005 4.005 10 N -0.157 5.157 11 C -0.070 4.070 12 C -0.147 4.147 13 C -0.092 4.092 14 C -0.091 4.091 15 C -0.176 4.176 16 C -0.044 4.044 17 N -0.126 5.126 18 C -0.020 4.020 19 C -0.156 4.156 20 C -0.175 4.175 21 C 0.015 3.985 22 N -0.315 5.315 23 C -0.486 4.486 24 H 0.087 0.913 25 C -0.199 4.199 26 N -0.538 5.538 27 Si 0.845 3.155 28 H -0.227 1.227 29 H -0.222 1.222 30 H -0.194 1.194 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.240 0.760 35 H 0.184 0.816 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.048 0.952 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.113 7.111 25.466 26.463 hybrid contribution -1.253 0.216 3.096 3.347 sum -0.139 7.328 28.562 29.487 Atomic orbital electron populations 1.21784 0.95284 1.01780 1.00281 1.20608 0.93702 0.93437 0.86335 0.95192 1.21783 0.94975 0.97067 0.83564 0.89331 1.45977 1.68870 1.12775 1.07597 1.17563 0.79105 0.86784 0.82306 1.90867 1.48233 1.13172 1.84460 1.21697 0.96461 0.89410 0.92898 1.67386 1.09022 1.05720 1.33540 1.22606 0.96364 1.00358 0.87655 1.22376 0.99191 0.93652 0.99515 1.18982 1.00378 0.95060 0.94747 1.21414 0.96462 0.94991 0.96272 1.22143 0.99611 0.95183 1.00678 1.23369 0.92576 1.01132 0.87276 1.68340 1.10588 1.08045 1.25599 1.19506 0.98596 0.90925 0.92979 1.21766 0.95510 1.00055 0.98297 1.21997 0.99421 1.00003 0.96073 1.21357 0.84678 0.96942 0.95568 1.44347 1.02483 1.65531 1.19109 1.20047 0.96893 1.44211 0.87425 0.91274 1.26131 1.01336 1.00046 0.92381 1.70889 1.32351 1.10623 1.39905 0.84627 0.77024 0.77593 0.76230 1.22683 1.22210 1.19436 0.92734 0.94159 0.91701 0.76021 0.81604 0.83648 0.83744 0.83890 0.81708 0.92590 0.92702 0.92608 0.91890 0.91486 0.95186 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 7.83 37.16 0.29 -2.33 16 2 C 0.17 3.36 3.04 -67.60 -0.21 3.16 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.13 2.45 1.99 -67.81 -0.14 2.32 16 5 H 0.09 1.92 7.58 -51.93 -0.39 1.52 16 6 N -0.70 -11.37 4.58 -54.62 -0.25 -11.62 16 7 C 0.56 9.63 7.78 -12.31 -0.10 9.54 16 8 O -0.50 -10.02 14.87 5.33 0.08 -9.95 16 9 C 0.15 2.17 6.81 -82.55 -0.56 1.61 16 10 N -0.44 -5.44 9.48 -9.55 -0.09 -5.53 16 11 C 0.08 0.66 11.12 -17.66 -0.20 0.47 16 12 C -0.13 -0.94 9.93 -38.94 -0.39 -1.33 16 13 C -0.08 -0.83 5.75 -106.79 -0.61 -1.44 16 14 C -0.07 -0.44 9.94 -39.25 -0.39 -0.83 16 15 C -0.16 -1.01 10.03 -39.72 -0.40 -1.41 16 16 C 0.13 1.25 11.14 -17.39 -0.19 1.06 16 17 N -0.42 -5.95 8.49 -10.75 -0.09 -6.04 16 18 C 0.10 1.43 6.61 -84.62 -0.56 0.87 16 19 C -0.12 -2.10 5.46 -26.69 -0.15 -2.25 16 20 C -0.14 -2.57 6.06 -26.83 -0.16 -2.73 16 21 C 0.14 3.09 4.35 -3.93 -0.02 3.07 16 22 N -0.59 -14.05 2.68 -165.03 -0.44 -14.50 16 23 C -0.36 -9.83 8.68 -15.05 -0.13 -9.96 16 24 H 0.07 2.02 6.43 -52.49 -0.34 1.68 16 25 C 0.01 0.15 4.83 -17.43 -0.08 0.06 16 26 N -0.90 -27.59 13.70 55.49 0.76 -26.83 16 27 Si 1.02 25.25 27.08 -169.99 -4.60 20.64 16 28 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 30 H -0.27 -6.12 4.73 56.52 0.27 -5.85 16 31 H 0.05 1.16 7.44 -51.93 -0.39 0.77 16 32 H 0.04 0.67 7.80 -51.93 -0.41 0.26 16 33 H 0.06 1.34 7.63 -51.93 -0.40 0.95 16 34 H 0.40 5.83 7.95 -40.82 -0.32 5.51 16 35 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 38 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.07 1.59 6.00 -51.93 -0.31 1.28 16 45 H 0.03 0.65 6.55 -51.93 -0.34 0.31 16 46 H 0.27 8.13 8.73 -40.82 -0.36 7.78 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -34.89 368.31 -9.48 -44.37 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.41 Total: 4.03 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -3.99 Total: -0.14 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -0.11 Total: -64.51 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -4.60 Total: 20.64 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.89 -9.48 -44.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993441286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.910 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds