Wall clock time and date at job start Sat Apr 11 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.69849 * 2 1 4 4 C 1.53192 * 109.58455 * 120.35298 * 2 1 3 5 5 H 1.09002 * 109.52703 * 294.39226 * 4 2 1 6 6 N 1.46497 * 109.49719 * 54.47629 * 4 2 1 7 7 C 1.34775 * 120.00136 * 204.84068 * 6 4 2 8 8 O 1.21550 * 120.00254 * 359.97438 * 7 6 4 9 9 C 1.47893 * 120.00321 * 179.97438 * 7 6 4 10 10 N 1.32138 * 120.03468 * 0.27098 * 9 7 6 11 11 C 1.31979 * 122.77476 * 180.25334 * 10 9 7 12 12 C 1.37773 * 121.72377 * 359.46166 * 11 10 9 13 13 C 1.40386 * 118.73010 * 0.25757 * 12 11 10 14 14 C 1.40647 * 122.27449 * 179.97438 * 13 12 11 15 15 C 1.36633 * 117.95037 * 180.02562 * 14 13 12 16 16 C 1.39402 * 119.92577 * 359.97438 * 15 14 13 17 17 N 1.31198 * 121.85670 * 359.97438 * 16 15 14 18 18 C 1.33262 * 121.22404 * 0.04174 * 17 16 15 19 19 C 1.53038 * 109.31362 * 174.42256 * 4 2 1 20 20 C 1.53038 * 109.54293 * 298.63923 * 19 4 2 21 21 C 1.53191 * 109.31186 * 61.35861 * 20 19 4 22 22 N 1.46922 * 109.58818 * 239.64274 * 2 1 3 23 23 C 1.36934 * 120.63378 * 6.60896 * 22 2 1 24 24 H 1.08005 * 119.99384 * 330.16598 * 23 22 2 25 25 C 1.38807 * 120.00213 * 150.16702 * 23 22 2 26 26 N 1.31624 * 120.00011 * 344.48827 * 25 23 22 27 27 Si 1.86800 * 120.00082 * 164.49411 * 25 23 22 28 28 H 1.48497 * 109.47305 * 59.99366 * 27 25 23 29 29 H 1.48501 * 109.47288 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47106 * 299.99642 * 27 25 23 31 31 H 1.08998 * 109.47802 * 299.64688 * 1 2 3 32 32 H 1.09007 * 109.47199 * 59.64762 * 1 2 3 33 33 H 1.09001 * 109.47199 * 179.64117 * 1 2 3 34 34 H 0.97004 * 120.00472 * 24.83156 * 6 4 2 35 35 H 1.07998 * 119.13771 * 179.74530 * 11 10 9 36 36 H 1.08000 * 120.63476 * 180.27853 * 12 11 10 37 37 H 1.08005 * 121.01976 * 0.04933 * 14 13 12 38 38 H 1.08002 * 120.03686 * 180.02562 * 15 14 13 39 39 H 1.08005 * 119.07066 * 179.97438 * 16 15 14 40 40 H 1.09007 * 109.45866 * 58.65543 * 19 4 2 41 41 H 1.08995 * 109.46241 * 178.61337 * 19 4 2 42 42 H 1.08997 * 109.50145 * 181.31685 * 20 19 4 43 43 H 1.09004 * 109.49341 * 301.41258 * 20 19 4 44 44 H 1.09001 * 109.58444 * 65.16037 * 21 20 19 45 45 H 1.09000 * 109.58889 * 185.57797 * 21 20 19 46 46 H 0.97003 * 119.99613 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0434 -0.7293 1.2455 5 1 1.7659 -0.1673 2.1372 6 7 1.4514 -2.0679 1.3071 7 6 1.3312 -2.6977 2.4926 8 8 1.7145 -2.1553 3.5106 9 6 0.7330 -4.0488 2.5550 10 7 0.3209 -4.6414 1.4481 11 6 -0.2248 -5.8431 1.4417 12 6 -0.3916 -6.5691 2.6007 13 6 0.0279 -6.0058 3.8162 14 6 -0.1072 -6.6805 5.0429 15 6 0.3305 -6.0490 6.1727 16 6 0.8905 -4.7754 6.0849 17 7 1.0150 -4.1512 4.9376 18 6 0.6078 -4.7111 3.7989 19 6 3.5674 -0.8480 1.1703 20 6 3.9569 -1.6656 -0.0633 21 6 3.4651 -0.9469 -1.3236 22 7 2.0225 -0.6996 -1.1944 23 6 1.1538 -1.1131 -2.1688 24 1 0.1397 -1.3802 -1.9101 25 6 1.5763 -1.1890 -3.4888 26 7 2.6870 -0.5880 -3.8598 27 14 0.5687 -2.1439 -4.7386 28 1 -0.7919 -1.5561 -4.8307 29 1 1.2295 -2.0716 -6.0665 30 1 0.4670 -3.5628 -4.3124 31 1 -0.3634 0.5083 0.8931 32 1 -0.3634 0.5193 -0.8869 33 1 -0.3633 -1.0276 -0.0064 34 1 1.1456 -2.5010 0.4948 35 1 -0.5447 -6.2703 0.5029 36 1 -0.8363 -7.5530 2.5745 37 1 -0.5432 -7.6675 5.0902 38 1 0.2435 -6.5363 7.1326 39 1 1.2317 -4.2888 6.9867 40 1 4.0060 0.1474 1.0994 41 1 3.9376 -1.3447 2.0670 42 1 5.0412 -1.7695 -0.1034 43 1 3.4983 -2.6528 -0.0051 44 1 3.9904 0.0020 -1.4315 45 1 3.6519 -1.5717 -2.1970 46 1 2.9821 -0.6408 -4.7824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993441292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:22 Heat of formation + Delta-G solvation = 63.465186 kcal Electronic energy + Delta-G solvation = -30152.036077 eV Core-core repulsion = 26235.594452 eV Total energy + Delta-G solvation = -3916.441625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.43169 -39.45844 -38.16579 -37.33967 -33.90368 -33.80788 -32.35639 -31.81338 -31.46814 -30.63305 -29.19480 -26.32489 -25.48262 -24.92375 -24.28063 -23.62244 -21.89578 -20.78804 -20.45004 -18.97211 -18.51931 -17.74037 -17.63052 -16.37222 -16.33179 -15.38351 -15.31148 -15.05663 -14.62303 -14.51340 -14.33347 -14.21499 -13.82709 -13.44287 -13.34493 -13.26972 -13.00058 -12.83369 -12.68313 -12.45924 -12.41483 -11.77127 -11.20472 -11.15247 -10.97621 -10.90663 -10.64456 -10.54295 -10.44507 -10.07243 -10.04480 -9.94872 -9.93629 -9.57275 -9.56758 -9.23703 -9.13208 -8.66372 -8.44412 -8.29137 -6.59935 -5.74781 -3.19518 -0.21834 0.48109 1.47998 2.63728 3.31086 3.40216 3.41486 3.46162 3.47059 3.99241 4.05213 4.14889 4.26784 4.41630 4.51234 4.53495 4.56710 4.91615 5.11090 5.22213 5.33586 5.38120 5.39543 5.45921 5.63188 5.66249 5.70804 5.82327 5.83648 6.04505 6.09761 6.21506 6.31113 6.34921 6.41307 6.50381 6.60710 6.75941 6.77865 6.86243 7.01648 7.06805 7.20346 7.45429 7.52228 7.72328 7.74247 7.85303 8.19986 8.49172 8.73566 9.24969 9.87896 10.45426 11.33405 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.003605 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.682176 B = 7764.356827 C = 8932.281621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.161 3.839 3 H 0.040 0.960 4 C 0.133 3.867 5 H 0.077 0.923 6 N -0.681 5.681 7 C 0.557 3.443 8 O -0.511 6.511 9 C 0.150 3.850 10 N -0.437 5.437 11 C 0.081 3.919 12 C -0.131 4.131 13 C -0.084 4.084 14 C -0.066 4.066 15 C -0.157 4.157 16 C 0.126 3.874 17 N -0.416 5.416 18 C 0.104 3.896 19 C -0.120 4.120 20 C -0.141 4.141 21 C 0.173 3.827 22 N -0.585 5.585 23 C -0.252 4.252 24 H 0.070 0.930 25 C 0.006 3.994 26 N -0.902 5.902 27 Si 0.899 3.101 28 H -0.283 1.283 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.418 0.582 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.018 0.982 45 H 0.085 0.915 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 -12.601 17.083 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.053 3.947 3 H 0.058 0.942 4 C 0.027 3.973 5 H 0.095 0.905 6 N -0.333 5.333 7 C 0.339 3.661 8 O -0.385 6.385 9 C -0.004 4.004 10 N -0.149 5.149 11 C -0.065 4.065 12 C -0.152 4.152 13 C -0.091 4.091 14 C -0.092 4.092 15 C -0.179 4.179 16 C -0.048 4.048 17 N -0.124 5.124 18 C -0.021 4.021 19 C -0.159 4.159 20 C -0.180 4.180 21 C 0.047 3.953 22 N -0.309 5.309 23 C -0.381 4.381 24 H 0.087 0.913 25 C -0.193 4.193 26 N -0.546 5.546 27 Si 0.729 3.271 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.210 1.210 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.256 0.744 35 H 0.184 0.816 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.181 0.819 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.103 0.897 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.440 -10.933 16.581 20.351 hybrid contribution -1.058 -2.198 -0.316 2.459 sum -5.499 -13.130 16.266 21.615 Atomic orbital electron populations 1.21791 0.95659 1.01617 1.00342 1.20712 0.93364 0.93858 0.86746 0.94214 1.21600 0.92961 0.82824 0.99931 0.90472 1.45909 1.60096 1.18138 1.09137 1.17596 0.80136 0.83741 0.84639 1.90815 1.48544 1.65102 1.34035 1.21755 0.96052 0.95591 0.86997 1.67472 1.07209 1.10949 1.29279 1.22670 0.95462 0.89738 0.98634 1.22367 0.99664 1.01137 0.92013 1.18976 0.99599 0.95161 0.95395 1.21397 0.97010 0.99727 0.91036 1.22102 0.99197 0.96782 0.99772 1.23318 0.93547 0.91561 0.96395 1.68319 1.13183 1.33653 0.97218 1.19514 0.97515 0.91468 0.93614 1.21769 0.95419 1.00442 0.98280 1.22149 0.98834 0.99701 0.97351 1.20777 0.83192 0.97055 0.94252 1.44136 1.03094 1.64845 1.18803 1.19109 0.95173 1.37752 0.86092 0.91274 1.25079 0.97819 0.99454 0.96960 1.70022 1.24103 1.43723 1.16715 0.86422 0.79612 0.80319 0.80701 1.20977 1.21832 1.20984 0.94251 0.91797 0.92634 0.74411 0.81586 0.83738 0.83869 0.84075 0.81902 0.91861 0.93081 0.93547 0.92796 0.96407 0.89701 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.72 37.16 0.29 -2.32 16 2 C 0.16 3.30 3.20 -67.60 -0.22 3.08 16 3 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.13 2.52 2.32 -67.81 -0.16 2.36 16 5 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 6 N -0.68 -12.82 3.46 -54.62 -0.19 -13.00 16 7 C 0.56 10.52 7.77 -12.31 -0.10 10.43 16 8 O -0.51 -10.60 14.88 5.32 0.08 -10.52 16 9 C 0.15 2.52 6.81 -82.55 -0.56 1.96 16 10 N -0.44 -6.79 9.48 -9.55 -0.09 -6.88 16 11 C 0.08 0.95 11.12 -17.66 -0.20 0.75 16 12 C -0.13 -1.26 9.93 -38.94 -0.39 -1.65 16 13 C -0.08 -0.96 5.75 -106.79 -0.61 -1.58 16 14 C -0.07 -0.53 9.94 -39.25 -0.39 -0.92 16 15 C -0.16 -1.19 10.03 -39.73 -0.40 -1.59 16 16 C 0.13 1.31 11.14 -17.39 -0.19 1.12 16 17 N -0.42 -6.33 8.49 -10.74 -0.09 -6.42 16 18 C 0.10 1.57 6.61 -84.62 -0.56 1.01 16 19 C -0.12 -2.25 5.58 -26.69 -0.15 -2.40 16 20 C -0.14 -2.82 5.93 -26.61 -0.16 -2.98 16 21 C 0.17 4.07 5.28 -3.71 -0.02 4.05 16 22 N -0.59 -13.92 2.64 -164.78 -0.44 -14.35 16 23 C -0.25 -6.51 8.58 -15.06 -0.13 -6.64 16 24 H 0.07 1.75 6.23 -52.48 -0.33 1.42 16 25 C 0.01 0.15 4.94 -17.43 -0.09 0.07 16 26 N -0.90 -25.62 11.23 55.49 0.62 -24.99 16 27 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.29 7.67 -51.92 -0.40 0.89 16 33 H 0.05 1.08 6.37 -51.93 -0.33 0.74 16 34 H 0.42 8.29 7.11 -40.82 -0.29 8.00 16 35 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 39 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.05 1.12 7.53 -51.93 -0.39 0.73 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 2.24 6.15 -51.93 -0.32 1.92 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -32.48 369.84 -9.82 -42.30 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.24 Total: 7.31 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -4.03 Total: 4.76 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -0.18 Total: -65.65 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.48 -9.82 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993441292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.769 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds