Wall clock time and date at job start Sat Apr 11 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.69792 * 2 1 4 4 C 1.52761 * 109.50851 * 239.88434 * 2 1 3 5 5 H 1.08999 * 109.36091 * 305.61352 * 4 2 1 6 6 N 1.46500 * 109.59346 * 65.65190 * 4 2 1 7 7 C 1.34772 * 120.00266 * 204.97844 * 6 4 2 8 8 O 1.21546 * 119.99960 * 0.02562 * 7 6 4 9 9 C 1.47894 * 120.00211 * 180.02562 * 7 6 4 10 10 N 1.32130 * 120.03392 * 0.02562 * 9 7 6 11 11 C 1.31981 * 122.76934 * 179.97438 * 10 9 7 12 12 C 1.37776 * 121.73013 * 359.97438 * 11 10 9 13 13 C 1.40385 * 118.72668 * 0.02562 * 12 11 10 14 14 C 1.40641 * 122.28208 * 179.97438 * 13 12 11 15 15 C 1.36651 * 117.95160 * 179.97438 * 14 13 12 16 16 C 1.39395 * 119.92510 * 0.02562 * 15 14 13 17 17 N 1.31203 * 121.85443 * 359.97438 * 16 15 14 18 18 C 1.33260 * 121.22342 * 359.76859 * 17 16 15 19 19 C 1.53043 * 109.38017 * 185.70517 * 4 2 1 20 20 C 1.53040 * 109.53972 * 61.24196 * 19 4 2 21 21 C 1.53192 * 109.30986 * 298.63069 * 20 19 4 22 22 N 1.46927 * 109.58700 * 120.35375 * 2 1 3 23 23 C 1.36929 * 120.63002 * 353.41827 * 22 2 1 24 24 H 1.08007 * 119.99926 * 29.33165 * 23 22 2 25 25 C 1.38813 * 120.00233 * 209.32424 * 23 22 2 26 26 N 1.31615 * 119.99447 * 15.60322 * 25 23 22 27 27 Si 1.86801 * 120.00297 * 195.59663 * 25 23 22 28 28 H 1.48498 * 109.47227 * 265.66148 * 27 25 23 29 29 H 1.48505 * 109.46871 * 25.65865 * 27 25 23 30 30 H 1.48498 * 109.46889 * 145.65551 * 27 25 23 31 31 H 1.09005 * 109.47259 * 299.64533 * 1 2 3 32 32 H 1.09007 * 109.47258 * 59.64536 * 1 2 3 33 33 H 1.08996 * 109.47153 * 179.64688 * 1 2 3 34 34 H 0.97002 * 119.99759 * 24.98919 * 6 4 2 35 35 H 1.08002 * 119.13378 * 179.97438 * 11 10 9 36 36 H 1.07997 * 120.63358 * 180.02562 * 12 11 10 37 37 H 1.08004 * 121.02845 * 359.97077 * 14 13 12 38 38 H 1.07997 * 120.03499 * 179.97438 * 15 14 13 39 39 H 1.07998 * 119.06999 * 180.02562 * 16 15 14 40 40 H 1.08998 * 109.46392 * 301.21691 * 19 4 2 41 41 H 1.09006 * 109.44302 * 181.24916 * 19 4 2 42 42 H 1.09000 * 109.50016 * 178.68299 * 20 19 4 43 43 H 1.08994 * 109.52594 * 58.59613 * 20 19 4 44 44 H 1.08994 * 109.59046 * 294.85065 * 21 20 19 45 45 H 1.08998 * 109.70276 * 174.49027 * 21 20 19 46 46 H 0.97006 * 119.99785 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2455 5 1 1.5964 -1.7169 -1.2937 6 7 1.6678 0.0375 -2.4414 7 6 1.5441 -0.5903 -3.6275 8 8 1.7409 -1.7873 -3.7050 9 6 1.1688 0.1770 -4.8348 10 7 0.9552 1.4783 -4.7515 11 6 0.6186 2.2151 -5.7935 12 6 0.4673 1.6683 -7.0490 13 6 0.6781 0.2904 -7.2148 14 6 0.5436 -0.3454 -8.4620 15 6 0.7703 -1.6917 -8.5225 16 6 1.1222 -2.3901 -7.3686 17 7 1.2462 -1.7916 -6.2077 18 6 1.0441 -0.4805 -6.0813 19 6 3.5638 -0.8461 -1.1726 20 6 3.9523 -1.6686 0.0581 21 6 3.4645 -0.9519 1.3210 22 7 2.0225 -0.6995 1.1945 23 6 1.1537 -1.1134 2.1685 24 1 0.1375 -1.3731 1.9108 25 6 1.5789 -1.1994 3.4871 26 7 2.6931 -0.6057 3.8592 27 14 0.5699 -2.1576 4.7334 28 1 -0.3458 -1.2310 5.4463 29 1 -0.2254 -3.1972 4.0320 30 1 1.4787 -2.8062 5.7124 31 1 -0.3634 0.5083 0.8932 32 1 -0.3634 0.5194 -0.8868 33 1 -0.3633 -1.0276 -0.0063 34 1 1.5106 0.9927 -2.3795 35 1 0.4576 3.2744 -5.6583 36 1 0.1918 2.2880 -7.8895 37 1 0.2696 0.2131 -9.3449 38 1 0.6760 -2.2140 -9.4630 39 1 1.2985 -3.4537 -7.4323 40 1 4.0058 0.1476 -1.0996 41 1 3.9311 -1.3418 -2.0713 42 1 5.0363 -1.7760 0.0965 43 1 3.4909 -2.6543 -0.0020 44 1 3.9928 -0.0049 1.4310 45 1 3.6506 -1.5777 2.1938 46 1 2.9901 -0.6655 4.7807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993441297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:26 Heat of formation + Delta-G solvation = 61.925300 kcal Electronic energy + Delta-G solvation = -29397.465288 eV Core-core repulsion = 25480.956888 eV Total energy + Delta-G solvation = -3916.508400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.56294 -39.47309 -38.27480 -37.43304 -34.20763 -33.99468 -32.50947 -31.87636 -31.54026 -30.78359 -29.05251 -26.34166 -25.55661 -24.92255 -24.40659 -23.71384 -21.93722 -20.60265 -20.39973 -19.44614 -18.86084 -17.82495 -17.74942 -16.47125 -16.28957 -15.63645 -15.44050 -15.10101 -14.74629 -14.64164 -14.36127 -14.21382 -13.71161 -13.64337 -13.47189 -13.35116 -13.18559 -12.93834 -12.64961 -12.54459 -12.45154 -11.62694 -11.46108 -11.12772 -11.00467 -10.87215 -10.68107 -10.49351 -10.30825 -10.18421 -10.13011 -9.99879 -9.97452 -9.69021 -9.68291 -9.37919 -9.19402 -8.79440 -8.51237 -8.37482 -6.60460 -5.74203 -3.17759 -0.35641 0.35364 1.36062 2.48771 3.18497 3.21101 3.40966 3.48385 3.51478 3.86211 3.90784 3.98099 4.13626 4.27675 4.40239 4.44950 4.55544 4.78127 4.99761 5.07107 5.20716 5.28970 5.37071 5.48578 5.51903 5.60336 5.69144 5.71304 5.88913 5.95680 6.06215 6.18758 6.22909 6.31058 6.42972 6.51530 6.62515 6.72094 6.81133 6.84077 6.94479 7.07416 7.16538 7.34161 7.46697 7.61603 7.73143 7.87297 7.93729 8.48729 8.55630 9.25969 9.88864 10.45732 11.34753 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021706 B = 0.002585 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.640169 B =10828.980967 C =11067.170589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.131 3.869 5 H 0.087 0.913 6 N -0.700 5.700 7 C 0.560 3.440 8 O -0.497 6.497 9 C 0.150 3.850 10 N -0.444 5.444 11 C 0.077 3.923 12 C -0.128 4.128 13 C -0.084 4.084 14 C -0.066 4.066 15 C -0.155 4.155 16 C 0.130 3.870 17 N -0.417 5.417 18 C 0.105 3.895 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.169 3.831 22 N -0.582 5.582 23 C -0.250 4.250 24 H 0.070 0.930 25 C 0.003 3.997 26 N -0.902 5.902 27 Si 0.901 3.099 28 H -0.288 1.288 29 H -0.279 1.279 30 H -0.290 1.290 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.404 0.596 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.019 0.981 45 H 0.087 0.913 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 4.231 -26.613 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.061 3.939 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.105 0.895 6 N -0.351 5.351 7 C 0.342 3.658 8 O -0.369 6.369 9 C -0.004 4.004 10 N -0.157 5.157 11 C -0.069 4.069 12 C -0.148 4.148 13 C -0.092 4.092 14 C -0.092 4.092 15 C -0.176 4.176 16 C -0.044 4.044 17 N -0.125 5.125 18 C -0.020 4.020 19 C -0.156 4.156 20 C -0.179 4.179 21 C 0.044 3.956 22 N -0.305 5.305 23 C -0.379 4.379 24 H 0.088 0.912 25 C -0.195 4.195 26 N -0.547 5.547 27 Si 0.730 3.270 28 H -0.215 1.215 29 H -0.204 1.204 30 H -0.216 1.216 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.184 0.816 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.106 0.894 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.863 3.460 -24.832 25.235 hybrid contribution -0.833 0.236 -1.059 1.368 sum -3.696 3.697 -25.891 26.413 Atomic orbital electron populations 1.21826 0.95684 1.01611 1.00333 1.20464 0.93270 0.93672 0.86535 0.95405 1.21736 0.95163 0.96812 0.83695 0.89506 1.46004 1.68704 1.12793 1.07583 1.17560 0.79169 0.86802 0.82301 1.90862 1.48397 1.13175 1.84439 1.21727 0.96307 0.89462 0.92875 1.67392 1.09003 1.05554 1.33702 1.22611 0.96330 1.00331 0.87656 1.22368 0.99322 0.93680 0.99474 1.18982 1.00329 0.95074 0.94767 1.21412 0.96511 0.95029 0.96221 1.22138 0.99661 0.95154 1.00692 1.23360 0.92662 1.01137 0.87271 1.68340 1.10506 1.08207 1.25434 1.19514 0.98621 0.90890 0.93012 1.21767 0.95352 1.00080 0.98362 1.22177 0.99189 0.99693 0.96874 1.20832 0.83145 0.97201 0.94417 1.44025 1.03195 1.65107 1.18190 1.19168 0.94956 1.37686 0.86101 0.91236 1.25068 0.97878 0.99656 0.96910 1.70033 1.23891 1.44078 1.16683 0.86310 0.79395 0.79961 0.81295 1.21528 1.20388 1.21619 0.91767 0.94191 0.92733 0.76054 0.81619 0.83684 0.83776 0.83933 0.81736 0.92726 0.93130 0.93039 0.92478 0.96299 0.89441 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 7.82 37.16 0.29 -2.39 16 2 C 0.17 3.55 3.02 -67.82 -0.20 3.34 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.13 2.54 1.97 -68.03 -0.13 2.40 16 5 H 0.09 1.90 7.58 -51.93 -0.39 1.50 16 6 N -0.70 -11.75 4.56 -54.83 -0.25 -12.00 16 7 C 0.56 9.84 7.77 -12.31 -0.10 9.74 16 8 O -0.50 -10.20 14.87 5.33 0.08 -10.12 16 9 C 0.15 2.24 6.81 -82.55 -0.56 1.67 16 10 N -0.44 -5.60 9.48 -9.55 -0.09 -5.69 16 11 C 0.08 0.69 11.12 -17.66 -0.20 0.49 16 12 C -0.13 -0.98 9.93 -38.94 -0.39 -1.37 16 13 C -0.08 -0.84 5.75 -106.79 -0.61 -1.46 16 14 C -0.07 -0.46 9.94 -39.25 -0.39 -0.85 16 15 C -0.16 -1.04 10.03 -39.72 -0.40 -1.44 16 16 C 0.13 1.26 11.14 -17.39 -0.19 1.07 16 17 N -0.42 -6.02 8.49 -10.75 -0.09 -6.11 16 18 C 0.10 1.45 6.61 -84.62 -0.56 0.89 16 19 C -0.12 -2.23 5.46 -26.69 -0.15 -2.38 16 20 C -0.14 -2.85 6.08 -26.61 -0.16 -3.01 16 21 C 0.17 4.10 5.29 -3.71 -0.02 4.08 16 22 N -0.58 -14.54 2.99 -165.03 -0.49 -15.04 16 23 C -0.25 -6.77 8.58 -15.06 -0.13 -6.90 16 24 H 0.07 1.85 6.22 -52.48 -0.33 1.53 16 25 C 0.00 0.09 4.94 -17.43 -0.09 0.01 16 26 N -0.90 -26.16 11.22 55.49 0.62 -25.54 16 27 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 31 H 0.06 1.32 7.62 -51.93 -0.40 0.93 16 32 H 0.04 0.67 7.79 -51.93 -0.40 0.26 16 33 H 0.05 1.11 7.44 -51.93 -0.39 0.73 16 34 H 0.40 6.11 7.95 -40.82 -0.32 5.79 16 35 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 38 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.09 2.35 6.12 -51.93 -0.32 2.04 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 372.99 15.07 5.62 5.62 Total: -1.00 -34.06 372.99 -9.96 -44.01 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.34 Total: 4.13 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -3.99 Total: 3.92 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -0.30 Total: -64.38 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.06 -9.96 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993441297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.940 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds