Wall clock time and date at job start Sat Apr 11 2020 06:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49431 * 2 1 4 4 C 1.52754 * 109.59221 * 240.04588 * 2 1 3 5 5 N 1.46920 * 109.01219 * 185.53615 * 4 2 1 6 6 C 1.34781 * 120.63510 * 233.58570 * 5 4 2 7 7 O 1.21594 * 119.99716 * 5.52485 * 6 5 4 8 8 C 1.47504 * 120.00213 * 185.52211 * 6 5 4 9 9 C 1.38671 * 120.34208 * 53.83412 * 8 6 5 10 10 C 1.38986 * 120.63399 * 179.72239 * 9 8 6 11 11 C 1.36219 * 121.14394 * 0.27818 * 10 9 8 12 12 C 1.40689 * 120.16814 * 359.97438 * 11 10 9 13 13 N 1.33754 * 120.97501 * 180.02562 * 12 11 10 14 14 C 1.31330 * 119.73193 * 179.97438 * 13 12 11 15 15 C 1.39642 * 120.68493 * 359.97438 * 14 13 12 16 16 N 1.31455 * 120.63998 * 359.97432 * 15 14 13 17 17 C 1.33490 * 119.72147 * 0.02592 * 16 15 14 18 18 C 1.46928 * 118.73668 * 53.30501 * 5 4 2 19 19 C 1.53190 * 108.77740 * 306.64757 * 18 5 4 20 20 C 1.53033 * 109.31201 * 54.63277 * 19 18 5 21 21 H 1.08999 * 109.46292 * 178.61331 * 20 19 18 22 22 N 1.46502 * 109.46113 * 58.65706 * 20 19 18 23 23 C 1.36931 * 120.00217 * 84.99748 * 22 20 19 24 24 H 1.07996 * 120.00091 * 0.02562 * 23 22 20 25 25 C 1.38813 * 120.00409 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99628 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00502 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.46917 * 89.99934 * 27 25 23 29 29 H 1.48498 * 109.47413 * 210.00043 * 27 25 23 30 30 H 1.48496 * 109.47177 * 330.00472 * 27 25 23 31 31 H 1.09006 * 109.47062 * 299.93583 * 1 2 3 32 32 H 1.08996 * 109.47445 * 59.93529 * 1 2 3 33 33 H 1.08997 * 109.47172 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.50955 * 65.65281 * 4 2 1 35 35 H 1.08998 * 109.43097 * 305.37335 * 4 2 1 36 36 H 1.08010 * 119.67813 * 359.97438 * 9 8 6 37 37 H 1.08005 * 119.42833 * 180.25573 * 10 9 8 38 38 H 1.08000 * 119.91295 * 179.97438 * 11 10 9 39 39 H 1.08000 * 119.66147 * 179.97438 * 14 13 12 40 40 H 1.07999 * 119.68368 * 179.97438 * 15 14 13 41 41 H 1.08998 * 109.58346 * 66.43927 * 18 5 4 42 42 H 1.09005 * 109.58432 * 186.85913 * 18 5 4 43 43 H 1.09003 * 109.49316 * 174.58616 * 19 18 5 44 44 H 1.09004 * 109.49605 * 294.68265 * 19 18 5 45 45 H 0.96999 * 119.99969 * 265.00078 * 22 20 19 46 46 H 0.97004 * 120.00002 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2469 5 7 3.5052 -0.8283 -1.1690 6 6 4.2819 -0.3845 -2.1771 7 8 3.7814 0.2024 -3.1171 8 6 5.7391 -0.6108 -2.1402 9 6 6.2451 -1.8898 -1.9640 10 6 7.6170 -2.1107 -1.9340 11 6 8.4994 -1.0819 -2.0705 12 6 8.0307 0.2329 -2.2462 13 7 8.8827 1.2550 -2.3823 14 6 8.4185 2.4726 -2.5456 15 6 7.0432 2.7124 -2.5791 16 7 6.1873 1.7232 -2.4484 17 6 6.6363 0.4772 -2.2814 18 6 4.1059 -1.4254 0.0317 19 6 3.5708 -0.6939 1.2666 20 6 2.0409 -0.7226 1.2486 21 1 1.6577 -0.2242 2.1389 22 7 1.5790 -2.1128 1.2311 23 6 1.4475 -2.8055 2.4050 24 1 1.6838 -2.3268 3.3438 25 6 1.0104 -4.1229 2.3884 26 7 0.7228 -4.7064 1.2442 27 14 0.8317 -5.0680 3.9897 28 1 -0.5408 -4.8801 4.5248 29 1 1.0729 -6.5121 3.7418 30 1 1.8206 -4.5630 4.9756 31 1 -0.3633 0.5129 0.8906 32 1 -0.3634 0.5148 -0.8893 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7652 -0.1497 -2.1345 35 1 1.6032 -1.7149 -1.2972 36 1 5.5666 -2.7228 -1.8530 37 1 7.9899 -3.1154 -1.7998 38 1 9.5614 -1.2762 -2.0438 39 1 9.1074 3.2971 -2.6550 40 1 6.6792 3.7202 -2.7138 41 1 3.8387 -2.4807 0.0876 42 1 5.1902 -1.3228 -0.0126 43 1 3.9334 -1.1883 2.1679 44 1 3.9154 0.3402 1.2547 45 1 1.3664 -2.5427 0.3879 46 1 0.4170 -5.6269 1.2326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036228970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:33 Heat of formation + Delta-G solvation = 53.310684 kcal Electronic energy + Delta-G solvation = -29970.345258 eV Core-core repulsion = 26053.463301 eV Total energy + Delta-G solvation = -3916.881958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70205 -39.96862 -37.89794 -37.24861 -34.91670 -34.25818 -32.89594 -31.41929 -31.10164 -30.90299 -29.17532 -26.47819 -25.71619 -25.05809 -24.39977 -23.56739 -22.90525 -21.65002 -19.95153 -19.06527 -18.52946 -17.92890 -17.36178 -17.05463 -16.52460 -15.76196 -15.34267 -15.21419 -14.96268 -14.63015 -14.41730 -14.19777 -14.13950 -13.97346 -13.47270 -13.28904 -12.87074 -12.56005 -12.40587 -12.28473 -12.09415 -12.00563 -11.92064 -11.80971 -11.50984 -11.35033 -11.18040 -10.92866 -10.78860 -10.47729 -10.46479 -10.20767 -9.83897 -9.82926 -9.55746 -9.24199 -9.21767 -8.95869 -8.73460 -8.20972 -6.99567 -5.81261 -3.09490 -0.16321 0.30259 1.54521 2.45603 2.88682 3.24192 3.39767 3.45812 3.46881 3.75336 3.79127 3.89333 4.03979 4.47602 4.52498 4.55560 4.69466 4.84104 4.98623 5.00535 5.19968 5.29784 5.36765 5.43412 5.53321 5.53945 5.58214 5.72960 5.76207 5.82842 5.88165 5.94348 5.97105 6.07510 6.09007 6.24315 6.32405 6.34328 6.40776 6.51297 6.63851 6.68566 6.77385 6.93189 7.00562 7.03464 7.49754 7.66879 7.69100 8.37328 8.37406 9.49104 10.05725 10.41289 11.41133 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.003245 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.449311 B = 8625.384461 C = 9521.024154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.065 0.935 4 C 0.121 3.879 5 N -0.595 5.595 6 C 0.565 3.435 7 O -0.528 6.528 8 C -0.083 4.083 9 C -0.062 4.062 10 C -0.099 4.099 11 C -0.070 4.070 12 C 0.074 3.926 13 N -0.425 5.425 14 C 0.074 3.926 15 C 0.077 3.923 16 N -0.406 5.406 17 C 0.110 3.890 18 C 0.112 3.888 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.047 0.953 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.928 11.022 -6.955 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.084 0.916 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.351 3.649 7 O -0.405 6.405 8 C -0.087 4.087 9 C -0.083 4.083 10 C -0.119 4.119 11 C -0.089 4.089 12 C -0.050 4.050 13 N -0.139 5.139 14 C -0.102 4.102 15 C -0.099 4.099 16 N -0.120 5.120 17 C -0.015 4.015 18 C -0.011 4.011 19 C -0.190 4.190 20 C 0.069 3.931 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.192 0.808 40 H 0.192 0.808 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.577 11.019 -7.247 19.657 hybrid contribution -0.051 -0.646 0.751 0.992 sum 14.526 10.373 -6.496 18.994 Atomic orbital electron populations 1.21660 0.94151 1.03164 1.00464 1.21620 0.96518 0.98989 0.95730 0.91614 1.21575 0.78074 1.01596 0.98830 1.48028 1.07116 1.59713 1.17793 1.17837 0.85298 0.78809 0.82930 1.90767 1.74353 1.40661 1.34677 1.19840 0.93823 0.92603 1.02473 1.21633 0.96225 0.96065 0.94356 1.20978 0.92437 1.00059 0.98385 1.20937 1.01048 0.89530 0.97429 1.19489 0.89958 0.94663 1.00931 1.68684 1.37268 0.99486 1.08438 1.24059 0.95621 0.95187 0.95325 1.24164 0.90915 0.99714 0.95085 1.68764 1.37721 0.98780 1.06715 1.19229 0.91468 0.91914 0.98928 1.21830 0.96509 0.98971 0.83761 1.22512 1.00524 0.98609 0.97368 1.20206 0.90680 0.87341 0.94888 0.93129 1.42472 1.79000 1.07689 1.06914 1.19218 1.37167 0.93825 0.86569 0.91287 1.24693 1.02319 0.97167 0.96573 1.69647 1.51789 1.13040 1.23607 0.86245 0.77776 0.79359 0.83111 1.21843 1.21893 1.20867 0.92822 0.93729 0.91032 0.89691 0.90498 0.83569 0.83763 0.83928 0.80762 0.80776 0.89502 0.91395 0.90740 0.93462 0.78095 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.06 37.16 0.34 -1.88 16 2 C -0.11 -1.82 2.65 -90.73 -0.24 -2.06 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.12 2.09 5.41 -3.94 -0.02 2.07 16 5 N -0.59 -9.98 2.98 -174.27 -0.52 -10.49 16 6 C 0.56 9.86 6.83 -12.48 -0.09 9.77 16 7 O -0.53 -10.77 16.19 5.28 0.09 -10.69 16 8 C -0.08 -1.23 4.64 -104.63 -0.49 -1.71 16 9 C -0.06 -0.73 7.75 -39.14 -0.30 -1.04 16 10 C -0.10 -0.91 9.93 -40.03 -0.40 -1.31 16 11 C -0.07 -0.70 9.97 -39.38 -0.39 -1.10 16 12 C 0.07 0.93 6.59 -84.82 -0.56 0.37 16 13 N -0.42 -4.90 10.46 -10.82 -0.11 -5.01 16 14 C 0.07 0.66 11.21 -17.24 -0.19 0.46 16 15 C 0.08 0.78 11.22 -17.19 -0.19 0.59 16 16 N -0.41 -6.00 9.67 -10.59 -0.10 -6.11 16 17 C 0.11 1.61 6.59 -84.53 -0.56 1.06 16 18 C 0.11 1.80 5.30 -3.71 -0.02 1.78 16 19 C -0.15 -2.52 5.78 -26.62 -0.15 -2.68 16 20 C 0.18 3.35 2.53 -67.89 -0.17 3.18 16 21 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 22 N -0.72 -16.26 3.64 -53.39 -0.19 -16.46 16 23 C -0.24 -6.08 9.93 -15.06 -0.15 -6.23 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 27 Si 0.90 21.49 29.55 -169.99 -5.02 16.47 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 34 H 0.08 1.49 7.00 -51.93 -0.36 1.12 16 35 H 0.08 1.42 6.64 -51.93 -0.34 1.08 16 36 H 0.15 1.59 7.73 -52.48 -0.41 1.19 16 37 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.09 1.57 7.74 -51.93 -0.40 1.16 16 42 H 0.07 0.97 5.39 -51.93 -0.28 0.69 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.38 9.28 5.94 -40.82 -0.24 9.04 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -33.10 372.87 -9.40 -42.50 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.20 Total: 9.17 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -3.68 Total: 0.86 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.20 Total: -63.93 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.10 -9.40 -42.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036228970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.813 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds