Wall clock time and date at job start Sat Apr 11 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.49995 * 2 1 4 4 C 1.52765 * 109.59037 * 240.04563 * 2 1 3 5 5 N 1.46920 * 109.00881 * 185.53977 * 4 2 1 6 6 C 1.34768 * 120.63090 * 233.58265 * 5 4 2 7 7 O 1.21548 * 120.00364 * 5.46496 * 6 5 4 8 8 C 1.47874 * 120.00185 * 185.45818 * 6 5 4 9 9 C 1.40616 * 119.75084 * 36.60902 * 8 6 5 10 10 C 1.35734 * 120.83443 * 179.97438 * 9 8 6 11 11 C 1.40710 * 120.08123 * 359.97438 * 10 9 8 12 12 N 1.33791 * 120.85712 * 179.97438 * 11 10 9 13 13 C 1.31331 * 119.76419 * 180.02562 * 12 11 10 14 14 C 1.39754 * 120.70580 * 0.02562 * 13 12 11 15 15 N 1.31276 * 120.68099 * 359.97438 * 14 13 12 16 16 C 1.33829 * 119.72942 * 0.02562 * 15 14 13 17 17 C 1.38412 * 119.75652 * 216.58025 * 8 6 5 18 18 C 1.46927 * 118.73684 * 53.31122 * 5 4 2 19 19 C 1.53190 * 108.77590 * 306.64162 * 18 5 4 20 20 C 1.53037 * 109.31174 * 54.63716 * 19 18 5 21 21 H 1.08998 * 109.46251 * 58.65596 * 20 19 18 22 22 N 1.46502 * 109.45999 * 178.62846 * 20 19 18 23 23 C 1.36940 * 119.99849 * 274.99794 * 22 20 19 24 24 H 1.07996 * 119.99923 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99810 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99757 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00249 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.46913 * 89.99741 * 27 25 23 29 29 H 1.48497 * 109.47277 * 209.99879 * 27 25 23 30 30 H 1.48498 * 109.46949 * 329.99975 * 27 25 23 31 31 H 1.08997 * 109.47039 * 299.93817 * 1 2 3 32 32 H 1.09003 * 109.46454 * 59.93201 * 1 2 3 33 33 H 1.08994 * 109.47570 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.50755 * 65.65334 * 4 2 1 35 35 H 1.08999 * 109.43064 * 305.38094 * 4 2 1 36 36 H 1.08004 * 119.58661 * 359.97438 * 9 8 6 37 37 H 1.07995 * 119.95911 * 180.02562 * 10 9 8 38 38 H 1.07999 * 119.64528 * 180.02562 * 13 12 11 39 39 H 1.08005 * 119.65910 * 180.02562 * 14 13 12 40 40 H 1.07998 * 120.25029 * 0.04704 * 17 8 6 41 41 H 1.09001 * 109.59149 * 66.43277 * 18 5 4 42 42 H 1.09008 * 109.58628 * 186.85614 * 18 5 4 43 43 H 1.09008 * 109.49710 * 174.58830 * 19 18 5 44 44 H 1.08996 * 109.49774 * 294.68461 * 19 18 5 45 45 H 0.96991 * 120.00452 * 94.99806 * 22 20 19 46 46 H 0.96997 * 119.99879 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0422 -0.7186 -1.2470 5 7 3.5053 -0.8284 -1.1690 6 6 4.2819 -0.3847 -2.1771 7 8 3.7815 0.2010 -3.1173 8 6 5.7428 -0.6103 -2.1394 9 6 6.2502 -1.8093 -1.6081 10 6 7.5872 -2.0395 -1.5632 11 6 8.4860 -1.0736 -2.0521 12 7 9.8067 -1.2841 -2.0150 13 6 10.6262 -0.3677 -2.4768 14 6 10.1339 0.8279 -3.0072 15 7 8.8424 1.0580 -3.0547 16 6 7.9871 0.1394 -2.5903 17 6 6.6006 0.3599 -2.6279 18 6 4.1058 -1.4257 0.0316 19 6 3.5708 -0.6942 1.2666 20 6 2.0408 -0.7229 1.2485 21 1 1.6971 -1.7571 1.2355 22 7 1.5259 -0.0525 2.4451 23 6 1.3944 -0.7489 3.6169 24 1 1.6706 -1.7921 3.6590 25 6 0.9070 -0.1136 4.7508 26 7 0.7811 -0.7828 5.8772 27 14 0.4298 1.6909 4.6781 28 1 -1.0012 1.8097 4.2995 29 1 0.6429 2.3133 6.0095 30 1 1.2684 2.3844 3.6677 31 1 -0.3633 0.5129 0.8905 32 1 -0.3632 0.5149 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7652 -0.1497 -2.1345 35 1 1.6031 -1.7150 -1.2974 36 1 5.5676 -2.5565 -1.2310 37 1 7.9614 -2.9656 -1.1525 38 1 11.6920 -0.5398 -2.4463 39 1 10.8232 1.5698 -3.3827 40 1 6.2066 1.2795 -3.0348 41 1 3.8385 -2.4810 0.0876 42 1 5.1902 -1.3232 -0.0126 43 1 3.9333 -1.1887 2.1679 44 1 3.9154 0.3398 1.2547 45 1 1.2781 0.8844 2.4074 46 1 0.4402 -0.3390 6.6694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036286249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:46 Heat of formation + Delta-G solvation = 59.845057 kcal Electronic energy + Delta-G solvation = -29105.776986 eV Core-core repulsion = 25189.178380 eV Total energy + Delta-G solvation = -3916.598606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84082 -40.46543 -38.12827 -37.28304 -35.19677 -34.87258 -33.08500 -31.66991 -31.26785 -31.02416 -29.90511 -27.16953 -25.80067 -25.29127 -24.54435 -22.75557 -22.70050 -21.64808 -20.73713 -19.73840 -19.10378 -18.14707 -17.58971 -17.42654 -16.49242 -16.10924 -15.53667 -15.28911 -15.18642 -14.89896 -14.59561 -14.38235 -14.28778 -13.99887 -13.79471 -13.36459 -13.13239 -12.90431 -12.60187 -12.53024 -12.26654 -12.20623 -12.10500 -12.06481 -11.80501 -11.72778 -11.44807 -11.08832 -10.93156 -10.76735 -10.58001 -10.28756 -10.04837 -9.82632 -9.62882 -9.53416 -9.33221 -9.02541 -8.94616 -8.65042 -7.32091 -5.82259 -3.17832 -0.29542 0.03075 1.45987 2.03319 2.68743 2.94872 3.33752 3.36999 3.42293 3.59189 3.60955 3.71119 3.83605 4.15998 4.39060 4.48479 4.54497 4.60438 4.74090 4.92359 4.95576 4.99724 5.07371 5.17298 5.27538 5.39664 5.43187 5.44206 5.55238 5.57146 5.63406 5.71426 5.78427 5.82446 5.90142 5.96690 6.04939 6.14439 6.21584 6.23045 6.34430 6.43834 6.63006 6.70645 6.82350 6.88385 7.27760 7.29105 7.92957 7.97490 8.36878 9.14923 9.87828 10.07524 11.35958 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.002694 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.877753 B =10391.804532 C =11155.591958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.597 5.597 6 C 0.559 3.441 7 O -0.536 6.536 8 C -0.104 4.104 9 C -0.075 4.075 10 C -0.087 4.087 11 C 0.092 3.908 12 N -0.426 5.426 13 C 0.082 3.918 14 C 0.073 3.927 15 N -0.417 5.417 16 C 0.071 3.929 17 C -0.021 4.021 18 C 0.093 3.907 19 C -0.153 4.153 20 C 0.189 3.811 21 H 0.058 0.942 22 N -0.745 5.745 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.882 3.118 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.177 0.823 39 H 0.177 0.823 40 H 0.150 0.850 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.361 0.639 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.654 -1.289 -18.967 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.135 4.135 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.329 5.329 6 C 0.346 3.654 7 O -0.414 6.414 8 C -0.109 4.109 9 C -0.096 4.096 10 C -0.107 4.107 11 C -0.032 4.032 12 N -0.140 5.140 13 C -0.093 4.093 14 C -0.103 4.103 15 N -0.131 5.131 16 C -0.053 4.053 17 C -0.042 4.042 18 C -0.029 4.029 19 C -0.194 4.194 20 C 0.079 3.921 21 H 0.076 0.924 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.194 0.806 39 H 0.194 0.806 40 H 0.168 0.832 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.107 -1.244 -19.203 25.095 hybrid contribution -0.094 1.383 0.304 1.419 sum 16.013 0.139 -18.899 24.771 Atomic orbital electron populations 1.21665 0.93965 1.02217 1.01634 1.21721 0.96701 1.00190 0.94891 0.91257 1.21660 0.77845 1.01221 0.99403 1.48054 1.07288 1.59839 1.17729 1.18150 0.85793 0.78779 0.82648 1.90788 1.74706 1.41333 1.34559 1.19988 0.93908 0.95744 1.01272 1.21304 0.95794 0.96527 0.95928 1.20706 0.91620 0.98937 0.99402 1.19673 0.91370 0.94204 0.97953 1.68738 1.02430 1.30273 1.12603 1.24161 1.01419 0.90430 0.93315 1.24113 0.92637 0.97435 0.96098 1.68685 1.03544 1.29189 1.11717 1.19415 0.94616 0.91916 0.99318 1.21131 0.89478 0.99235 0.94333 1.22354 0.98400 0.97649 0.84532 1.22679 0.99979 1.00545 0.96199 1.20175 0.90416 0.96089 0.85441 0.92375 1.42777 1.78130 1.10095 1.07661 1.19038 1.36414 0.95687 0.86104 0.89182 1.24658 1.01327 0.97389 0.95622 1.69695 1.51988 1.35715 1.00664 0.86598 0.78598 0.86775 0.76827 1.21043 1.21792 1.20380 0.91419 0.93473 0.92471 0.89048 0.90988 0.83298 0.83460 0.80603 0.80597 0.83192 0.90710 0.89397 0.89878 0.92235 0.80605 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.03 37.16 0.34 -1.65 16 2 C -0.11 -1.71 2.44 -90.72 -0.22 -1.93 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.12 1.57 5.70 -3.93 -0.02 1.55 16 5 N -0.60 -7.62 2.98 -174.13 -0.52 -8.14 16 6 C 0.56 7.65 7.35 -12.32 -0.09 7.56 16 7 O -0.54 -8.93 16.24 5.32 0.09 -8.85 16 8 C -0.10 -1.21 5.25 -104.99 -0.55 -1.76 16 9 C -0.08 -0.70 7.24 -39.58 -0.29 -0.99 16 10 C -0.09 -0.81 9.95 -39.55 -0.39 -1.20 16 11 C 0.09 1.00 6.59 -84.73 -0.56 0.44 16 12 N -0.43 -4.25 10.46 -10.74 -0.11 -4.36 16 13 C 0.08 0.56 11.22 -17.20 -0.19 0.37 16 14 C 0.07 0.52 11.21 -17.22 -0.19 0.33 16 15 N -0.42 -4.51 10.46 -10.81 -0.11 -4.62 16 16 C 0.07 0.83 6.58 -84.81 -0.56 0.27 16 17 C -0.02 -0.26 9.57 -38.69 -0.37 -0.63 16 18 C 0.09 1.08 4.78 -3.71 -0.02 1.07 16 19 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 20 C 0.19 3.26 2.20 -67.89 -0.15 3.11 16 21 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 22 N -0.74 -16.40 4.21 -53.39 -0.22 -16.63 16 23 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16 24 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -28.53 13.97 55.49 0.78 -27.75 16 27 Si 0.88 21.64 27.74 -169.99 -4.71 16.93 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 31 H 0.07 1.12 7.36 -51.93 -0.38 0.74 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.24 7.00 -51.93 -0.36 0.87 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.15 1.11 6.13 -52.48 -0.32 0.79 16 37 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.18 0.54 8.06 -52.48 -0.42 0.12 16 40 H 0.15 1.82 8.00 -52.49 -0.42 1.40 16 41 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 42 H 0.09 0.90 4.52 -51.92 -0.23 0.66 16 43 H 0.08 1.39 8.14 -51.92 -0.42 0.96 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.36 8.04 5.36 -40.82 -0.22 7.82 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -34.18 371.34 -9.07 -43.26 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.17 Total: 7.06 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -3.67 Total: -2.49 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.19 Total: -61.49 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.18 -9.07 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036286249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.102 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds