Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.49995 * 2 1 4 4 C 1.52765 * 109.59037 * 240.04563 * 2 1 3 5 5 N 1.46920 * 109.00881 * 185.53977 * 4 2 1 6 6 C 1.34768 * 120.63090 * 233.58265 * 5 4 2 7 7 O 1.21548 * 120.00364 * 5.46496 * 6 5 4 8 8 C 1.47874 * 120.00185 * 185.45818 * 6 5 4 9 9 C 1.40616 * 119.75084 * 36.60902 * 8 6 5 10 10 C 1.35734 * 120.83443 * 179.97438 * 9 8 6 11 11 C 1.40710 * 120.08123 * 359.97438 * 10 9 8 12 12 N 1.33791 * 120.85712 * 179.97438 * 11 10 9 13 13 C 1.31331 * 119.76419 * 180.02562 * 12 11 10 14 14 C 1.39754 * 120.70580 * 0.02562 * 13 12 11 15 15 N 1.31276 * 120.68099 * 359.97438 * 14 13 12 16 16 C 1.33829 * 119.72942 * 0.02562 * 15 14 13 17 17 C 1.38412 * 119.75652 * 216.58025 * 8 6 5 18 18 C 1.46927 * 118.73684 * 53.31122 * 5 4 2 19 19 C 1.53190 * 108.77590 * 306.64162 * 18 5 4 20 20 C 1.53037 * 109.31174 * 54.63716 * 19 18 5 21 21 H 1.08998 * 109.46251 * 58.65596 * 20 19 18 22 22 N 1.46502 * 109.45999 * 178.62846 * 20 19 18 23 23 C 1.36940 * 119.99849 * 274.99794 * 22 20 19 24 24 H 1.07996 * 119.99923 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99810 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99757 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00249 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.46913 * 89.99741 * 27 25 23 29 29 H 1.48497 * 109.47277 * 209.99879 * 27 25 23 30 30 H 1.48498 * 109.46949 * 329.99975 * 27 25 23 31 31 H 1.08997 * 109.47039 * 299.93817 * 1 2 3 32 32 H 1.09003 * 109.46454 * 59.93201 * 1 2 3 33 33 H 1.08994 * 109.47570 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.50755 * 65.65334 * 4 2 1 35 35 H 1.08999 * 109.43064 * 305.38094 * 4 2 1 36 36 H 1.08004 * 119.58661 * 359.97438 * 9 8 6 37 37 H 1.07995 * 119.95911 * 180.02562 * 10 9 8 38 38 H 1.07999 * 119.64528 * 180.02562 * 13 12 11 39 39 H 1.08005 * 119.65910 * 180.02562 * 14 13 12 40 40 H 1.07998 * 120.25029 * 0.04704 * 17 8 6 41 41 H 1.09001 * 109.59149 * 66.43277 * 18 5 4 42 42 H 1.09008 * 109.58628 * 186.85614 * 18 5 4 43 43 H 1.09008 * 109.49710 * 174.58830 * 19 18 5 44 44 H 1.08996 * 109.49774 * 294.68461 * 19 18 5 45 45 H 0.96991 * 120.00452 * 94.99806 * 22 20 19 46 46 H 0.96997 * 119.99879 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0422 -0.7186 -1.2470 5 7 3.5053 -0.8284 -1.1690 6 6 4.2819 -0.3847 -2.1771 7 8 3.7815 0.2010 -3.1173 8 6 5.7428 -0.6103 -2.1394 9 6 6.2502 -1.8093 -1.6081 10 6 7.5872 -2.0395 -1.5632 11 6 8.4860 -1.0736 -2.0521 12 7 9.8067 -1.2841 -2.0150 13 6 10.6262 -0.3677 -2.4768 14 6 10.1339 0.8279 -3.0072 15 7 8.8424 1.0580 -3.0547 16 6 7.9871 0.1394 -2.5903 17 6 6.6006 0.3599 -2.6279 18 6 4.1058 -1.4257 0.0316 19 6 3.5708 -0.6942 1.2666 20 6 2.0408 -0.7229 1.2485 21 1 1.6971 -1.7571 1.2355 22 7 1.5259 -0.0525 2.4451 23 6 1.3944 -0.7489 3.6169 24 1 1.6706 -1.7921 3.6590 25 6 0.9070 -0.1136 4.7508 26 7 0.7811 -0.7828 5.8772 27 14 0.4298 1.6909 4.6781 28 1 -1.0012 1.8097 4.2995 29 1 0.6429 2.3133 6.0095 30 1 1.2684 2.3844 3.6677 31 1 -0.3633 0.5129 0.8905 32 1 -0.3632 0.5149 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7652 -0.1497 -2.1345 35 1 1.6031 -1.7150 -1.2974 36 1 5.5676 -2.5565 -1.2310 37 1 7.9614 -2.9656 -1.1525 38 1 11.6920 -0.5398 -2.4463 39 1 10.8232 1.5698 -3.3827 40 1 6.2066 1.2795 -3.0348 41 1 3.8385 -2.4810 0.0876 42 1 5.1902 -1.3232 -0.0126 43 1 3.9333 -1.1887 2.1679 44 1 3.9154 0.3398 1.2547 45 1 1.2781 0.8844 2.4074 46 1 0.4402 -0.3390 6.6694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036286249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = 36.531778 kcal Electronic energy + Delta-G solvation = -29106.787926 eV Core-core repulsion = 25189.178380 eV Total energy + Delta-G solvation = -3917.609546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.55984 -41.48582 -39.31107 -38.16401 -36.36542 -35.86013 -34.57019 -33.27877 -32.06935 -31.78122 -31.48957 -28.14880 -27.08367 -26.15524 -25.55609 -24.16014 -23.52670 -23.00428 -21.83090 -20.98078 -19.93564 -19.48156 -18.89819 -18.21480 -17.42129 -17.09658 -16.79922 -16.37701 -16.08568 -16.04109 -15.77072 -15.41627 -15.24555 -15.13661 -14.85712 -14.81729 -14.46707 -14.21439 -13.84383 -13.50293 -13.47787 -13.26030 -12.98901 -12.95526 -12.84868 -12.81864 -12.75258 -12.54872 -12.43652 -12.14578 -12.00429 -11.87558 -11.76020 -11.18177 -11.16805 -10.90316 -10.18901 -10.06177 -9.84521 -9.66978 -9.26246 -7.99911 -5.31343 -1.01560 -0.64887 0.70747 1.25232 1.37661 1.38518 1.45613 1.70686 2.02828 2.48861 2.89440 2.93902 3.07730 3.16367 3.28717 3.32756 3.54289 3.71959 3.73658 3.87257 3.93232 3.98314 4.02939 4.10595 4.24775 4.34443 4.41428 4.44875 4.59936 4.62567 4.69215 4.73064 4.77195 4.81674 4.85754 4.91895 5.00019 5.01396 5.13097 5.16993 5.25650 5.37442 5.43981 5.49201 5.58507 5.81111 6.17936 6.24094 6.24807 6.64543 6.92273 7.10458 7.87732 8.05314 9.21582 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.002694 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.877753 B =10391.804532 C =11155.591958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 H 0.058 0.942 4 C 0.125 3.875 5 N -0.595 5.595 6 C 0.560 3.440 7 O -0.572 6.572 8 C -0.113 4.113 9 C -0.075 4.075 10 C -0.081 4.081 11 C 0.075 3.925 12 N -0.449 5.449 13 C 0.096 3.904 14 C 0.084 3.916 15 N -0.453 5.453 16 C 0.050 3.950 17 C -0.035 4.035 18 C 0.101 3.899 19 C -0.146 4.146 20 C 0.182 3.818 21 H 0.057 0.943 22 N -0.749 5.749 23 C -0.215 4.215 24 H 0.065 0.935 25 C -0.063 4.063 26 N -0.983 5.983 27 Si 0.944 3.056 28 H -0.280 1.280 29 H -0.301 1.301 30 H -0.259 1.259 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.223 0.777 39 H 0.219 0.781 40 H 0.136 0.864 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.361 0.639 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.917 -1.500 -20.757 28.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 H 0.076 0.924 4 C 0.003 3.997 5 N -0.326 5.326 6 C 0.349 3.651 7 O -0.452 6.452 8 C -0.118 4.118 9 C -0.095 4.095 10 C -0.100 4.100 11 C -0.048 4.048 12 N -0.163 5.163 13 C -0.081 4.081 14 C -0.092 4.092 15 N -0.167 5.167 16 C -0.072 4.072 17 C -0.056 4.056 18 C -0.021 4.021 19 C -0.187 4.187 20 C 0.074 3.926 21 H 0.075 0.925 22 N -0.391 5.391 23 C -0.346 4.346 24 H 0.083 0.917 25 C -0.254 4.254 26 N -0.635 5.635 27 Si 0.773 3.227 28 H -0.206 1.206 29 H -0.228 1.228 30 H -0.184 1.184 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.188 0.812 37 H 0.187 0.813 38 H 0.239 0.761 39 H 0.235 0.765 40 H 0.153 0.847 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.194 0.806 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.361 -1.471 -21.042 27.965 hybrid contribution -0.563 1.434 0.748 1.713 sum 17.797 -0.037 -20.294 26.992 Atomic orbital electron populations 1.21636 0.93502 1.02576 1.01536 1.21597 0.97058 0.99416 0.94442 0.92388 1.21621 0.78128 1.02030 0.97936 1.48080 1.07197 1.59517 1.17774 1.18439 0.86600 0.77884 0.82162 1.90764 1.75521 1.42954 1.35984 1.19874 0.92483 0.96869 1.02525 1.21429 0.96298 0.95944 0.95837 1.20979 0.91352 0.99275 0.98431 1.19908 0.92311 0.94244 0.98303 1.68818 1.02133 1.31480 1.13880 1.24986 1.03126 0.89321 0.90640 1.24923 0.91935 0.98302 0.94064 1.68698 1.05140 1.29767 1.13145 1.19461 0.94521 0.92818 1.00409 1.21087 0.90275 0.99099 0.95133 1.22402 0.99338 0.98256 0.82090 1.22494 0.98237 1.00282 0.97675 1.20438 0.91609 0.95857 0.84700 0.92514 1.42824 1.78467 1.10032 1.07737 1.19017 1.33480 0.94729 0.87383 0.91701 1.25359 1.02895 1.01618 0.95519 1.69858 1.54580 1.37538 1.01493 0.85564 0.78570 0.81946 0.76597 1.20640 1.22765 1.18418 0.93765 0.91292 0.91903 0.89324 0.88901 0.81154 0.81309 0.76107 0.76471 0.84661 0.88037 0.87519 0.91302 0.93480 0.80611 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.03 71.98 0.65 -3.06 16 2 C -0.11 -3.00 2.44 -10.86 -0.03 -3.02 16 3 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.13 3.03 5.70 86.22 0.49 3.52 16 5 N -0.60 -14.25 2.98 -823.12 -2.45 -16.70 16 6 C 0.56 15.02 7.35 86.80 0.64 15.66 16 7 O -0.57 -19.18 16.24 -3.87 -0.06 -19.25 16 8 C -0.11 -2.57 5.25 -20.10 -0.11 -2.67 16 9 C -0.08 -1.27 7.24 22.27 0.16 -1.11 16 10 C -0.08 -1.35 9.95 22.29 0.22 -1.13 16 11 C 0.07 1.53 6.59 40.32 0.27 1.79 16 12 N -0.45 -7.83 10.46 -187.89 -1.96 -9.79 16 13 C 0.10 0.97 11.22 85.13 0.95 1.93 16 14 C 0.08 0.96 11.21 85.14 0.95 1.91 16 15 N -0.45 -9.33 10.46 -188.11 -1.97 -11.30 16 16 C 0.05 1.15 6.58 40.25 0.27 1.41 16 17 C -0.04 -0.87 9.57 22.85 0.22 -0.65 16 18 C 0.10 2.14 4.78 86.36 0.41 2.55 16 19 C -0.15 -4.36 5.66 30.67 0.17 -4.19 16 20 C 0.18 6.14 2.20 45.02 0.10 6.24 16 21 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 22 N -0.75 -32.75 4.21 -322.82 -1.36 -34.11 16 23 C -0.21 -11.56 10.41 84.03 0.87 -10.69 16 24 H 0.07 3.77 8.06 -2.91 -0.02 3.75 16 25 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 26 N -0.98 -61.79 13.97 21.65 0.30 -61.49 16 27 Si 0.94 45.27 27.74 68.60 1.90 47.17 16 28 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 29 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 30 H -0.26 -11.44 6.52 99.48 0.65 -10.79 16 31 H 0.04 1.42 7.36 -2.39 -0.02 1.41 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 2.28 7.00 -2.39 -0.02 2.26 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 36 H 0.17 2.02 6.13 -2.91 -0.02 2.00 16 37 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.22 0.05 8.06 -2.91 -0.02 0.03 16 39 H 0.22 0.40 8.06 -2.91 -0.02 0.38 16 40 H 0.14 3.54 8.00 -2.91 -0.02 3.52 16 41 H 0.10 1.69 8.05 -2.39 -0.02 1.67 16 42 H 0.11 1.94 4.52 -2.38 -0.01 1.93 16 43 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 44 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 45 H 0.36 15.81 5.36 -92.72 -0.50 15.31 16 46 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -77.56 371.34 1.58 -75.98 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.46 Total: 24.12 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 6.72 Total: 5.37 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -7.44 Total: -133.40 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.06 Total: -19.25 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Total: -77.56 1.58 -75.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036286249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.517 kcal (2) G-P(sol) polarization free energy of solvation -77.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds