Wall clock time and date at job start Sat Apr 11 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70430 * 2 1 4 4 C 1.53626 * 109.66309 * 120.58910 * 2 1 3 5 5 C 1.53041 * 109.24468 * 174.55424 * 4 2 1 6 6 H 1.08997 * 109.45214 * 58.52118 * 5 4 2 7 7 N 1.46499 * 109.46115 * 178.49421 * 5 4 2 8 8 C 1.36943 * 119.99750 * 205.06710 * 7 5 4 9 9 H 1.08002 * 120.00028 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00073 * 179.97438 * 8 7 5 11 11 N 1.31609 * 120.00508 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99637 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47153 * 90.00639 * 12 10 8 14 14 H 1.48499 * 109.47031 * 209.99993 * 12 10 8 15 15 H 1.48500 * 109.47247 * 330.00141 * 12 10 8 16 16 C 1.53042 * 109.53217 * 298.51034 * 5 4 2 17 17 C 1.53195 * 109.31424 * 61.36831 * 16 5 4 18 18 N 1.46925 * 109.58993 * 239.64208 * 2 1 3 19 19 C 1.34775 * 120.62772 * 6.62810 * 18 2 1 20 20 O 1.21485 * 120.00186 * 0.27420 * 19 18 2 21 21 C 1.48357 * 119.99540 * 180.27279 * 19 18 2 22 22 C 1.40172 * 119.19888 * 157.15735 * 21 19 18 23 23 C 1.36621 * 119.70498 * 179.97438 * 22 21 19 24 24 C 1.40597 * 118.20403 * 0.02562 * 23 22 21 25 25 C 1.40743 * 121.36578 * 180.26965 * 24 23 22 26 26 C 1.36585 * 118.12737 * 180.23185 * 25 24 23 27 27 C 1.39432 * 119.84578 * 359.47116 * 26 25 24 28 28 N 1.31011 * 121.84429 * 0.29982 * 27 26 25 29 29 C 1.33863 * 121.42440 * 359.97438 * 28 27 26 30 30 N 1.31879 * 119.20226 * 337.15880 * 21 19 18 31 31 H 1.08993 * 109.46902 * 174.17384 * 1 2 3 32 32 H 1.08994 * 109.47126 * 294.18028 * 1 2 3 33 33 H 1.09005 * 109.46587 * 54.17777 * 1 2 3 34 34 H 1.08994 * 109.63701 * 54.55635 * 4 2 1 35 35 H 1.09004 * 109.45963 * 294.43427 * 4 2 1 36 36 H 0.96998 * 120.00346 * 25.05789 * 7 5 4 37 37 H 0.96996 * 120.00633 * 180.02562 * 11 10 8 38 38 H 1.08994 * 109.49984 * 301.41138 * 16 5 4 39 39 H 1.09002 * 109.52430 * 181.33070 * 16 5 4 40 40 H 1.09006 * 109.58489 * 185.57970 * 17 16 5 41 41 H 1.08997 * 109.70525 * 65.21965 * 17 16 5 42 42 H 1.08001 * 120.14447 * 0.02573 * 22 21 19 43 43 H 1.08001 * 120.89784 * 179.97438 * 23 22 21 44 44 H 1.07991 * 120.93629 * 359.97438 * 25 24 23 45 45 H 1.07999 * 120.07383 * 179.74972 * 26 25 24 46 46 H 1.08007 * 119.07513 * 180.27597 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7362 1.2454 5 6 3.5711 -0.8497 1.1678 6 1 4.0063 0.1473 1.0991 7 7 4.0725 -1.5193 2.3705 8 6 5.3565 -1.2982 2.7923 9 1 5.9996 -0.6305 2.2381 10 6 5.8314 -1.9322 3.9322 11 7 7.0652 -1.7194 4.3379 12 14 4.7188 -3.0864 4.8911 13 1 4.8653 -4.4669 4.3637 14 1 5.0994 -3.0620 6.3263 15 1 3.3075 -2.6480 4.7456 16 6 3.9615 -1.6627 -0.0686 17 6 3.4657 -0.9420 -1.3262 18 7 2.0226 -0.6996 -1.1944 19 6 1.1675 -1.1062 -2.1535 20 8 -0.0225 -0.8909 -2.0375 21 6 1.6796 -1.8168 -3.3510 22 6 0.8114 -2.6410 -4.0803 23 6 1.2719 -3.2998 -5.1851 24 6 2.6177 -3.1228 -5.5514 25 6 3.1602 -3.7649 -6.6802 26 6 4.4770 -3.5499 -6.9725 27 6 5.2378 -2.7046 -6.1659 28 7 4.7279 -2.1049 -5.1186 29 6 3.4463 -2.2755 -4.7718 30 7 2.9404 -1.6578 -3.7034 31 1 -0.3633 -1.0223 -0.1043 32 1 -0.3633 0.4209 0.9374 33 1 -0.3633 0.6015 -0.8333 34 1 1.6096 -1.7336 1.2891 35 1 1.7688 -0.1775 2.1390 36 1 3.4951 -2.1191 2.8681 37 1 7.3972 -2.1627 5.1342 38 1 3.5062 -2.6514 -0.0125 39 1 5.0460 -1.7635 -0.1108 40 1 3.6533 -1.5638 -2.2016 41 1 3.9876 0.0088 -1.4347 42 1 -0.2171 -2.7540 -3.7708 43 1 0.6200 -3.9399 -5.7609 44 1 2.5536 -4.4127 -7.2955 45 1 4.9266 -4.0300 -7.8291 46 1 6.2767 -2.5399 -6.4111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044614898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:51 Heat of formation + Delta-G solvation = 87.913821 kcal Electronic energy + Delta-G solvation = -29492.358089 eV Core-core repulsion = 25576.976636 eV Total energy + Delta-G solvation = -3915.381453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73483 -40.36785 -38.15946 -37.34274 -34.85217 -34.41561 -32.77844 -31.92593 -31.44266 -31.04175 -29.71917 -27.24145 -25.91065 -24.72796 -24.18224 -23.11153 -22.45650 -22.15688 -20.36607 -19.75672 -18.95243 -17.84710 -17.53592 -17.33704 -16.32470 -15.97659 -15.82250 -15.21685 -14.90791 -14.83492 -14.55199 -14.41779 -14.11266 -13.85440 -13.59572 -13.52449 -13.22975 -12.99566 -12.61144 -12.49631 -12.31885 -12.19330 -12.14186 -11.81759 -11.63403 -11.41221 -10.99384 -10.97130 -10.75522 -10.70471 -10.27154 -10.24078 -9.87815 -9.56776 -9.52046 -9.35047 -9.27513 -9.00369 -8.72392 -8.42578 -7.23238 -5.74361 -3.09589 -0.31902 0.11928 1.46007 2.06410 2.82617 2.90470 3.34969 3.39351 3.42712 3.46986 3.75103 3.97664 4.16093 4.19964 4.31751 4.39470 4.61474 4.62135 4.81772 4.92450 5.01617 5.09320 5.21852 5.31023 5.38528 5.43021 5.47144 5.58119 5.62723 5.68157 5.69554 5.75146 5.86559 5.97563 6.04707 6.10086 6.12644 6.33108 6.38930 6.41286 6.45137 6.55623 6.73548 6.90643 6.93560 7.04534 7.47109 7.69471 8.02393 8.10307 8.44867 9.23415 9.96174 10.16377 11.44070 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012104 B = 0.003201 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.696193 B = 8744.539568 C =10278.799021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.144 3.856 3 H 0.078 0.922 4 C -0.137 4.137 5 C 0.182 3.818 6 H 0.057 0.943 7 N -0.749 5.749 8 C -0.241 4.241 9 H 0.091 0.909 10 C 0.004 3.996 11 N -0.935 5.935 12 Si 0.883 3.117 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.150 4.150 17 C 0.077 3.923 18 N -0.574 5.574 19 C 0.564 3.436 20 O -0.530 6.530 21 C 0.148 3.852 22 C -0.130 4.130 23 C -0.046 4.046 24 C -0.144 4.144 25 C -0.047 4.047 26 C -0.174 4.174 27 C 0.160 3.840 28 N -0.456 5.456 29 C 0.296 3.704 30 N -0.421 5.421 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.134 0.866 41 H 0.070 0.930 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.044 -3.863 -25.969 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 H 0.095 0.905 4 C -0.176 4.176 5 C 0.072 3.928 6 H 0.075 0.925 7 N -0.390 5.390 8 C -0.371 4.371 9 H 0.109 0.891 10 C -0.192 4.192 11 N -0.582 5.582 12 Si 0.714 3.286 13 H -0.212 1.212 14 H -0.218 1.218 15 H -0.203 1.203 16 C -0.191 4.191 17 C -0.046 4.046 18 N -0.305 5.305 19 C 0.350 3.650 20 O -0.407 6.407 21 C -0.008 4.008 22 C -0.150 4.150 23 C -0.073 4.073 24 C -0.149 4.149 25 C -0.073 4.073 26 C -0.194 4.194 27 C -0.017 4.017 28 N -0.164 5.164 29 C 0.058 3.942 30 N -0.135 5.135 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.150 0.850 41 H 0.088 0.912 42 H 0.173 0.827 43 H 0.167 0.833 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.364 -2.510 -24.761 27.360 hybrid contribution -1.404 -2.073 -0.170 2.510 sum -12.767 -4.584 -24.931 28.383 Atomic orbital electron populations 1.22206 0.92747 1.03653 1.00711 1.21506 0.95476 0.95404 0.83519 0.90455 1.22407 0.97652 1.00805 0.96746 1.20190 0.90612 0.95512 0.86475 0.92518 1.42796 1.13170 1.54702 1.28370 1.19090 0.87556 1.23029 1.07409 0.89135 1.24659 0.96101 1.00169 0.98233 1.69694 1.15080 1.47139 1.26336 0.86563 0.80558 0.81620 0.79874 1.21216 1.21788 1.20326 1.22637 1.02130 0.99405 0.94901 1.22968 0.77628 1.02449 1.01525 1.48173 1.08602 1.54562 1.19114 1.17916 0.85775 0.79323 0.82018 1.90841 1.15266 1.56996 1.77630 1.21718 0.88692 0.94723 0.95653 1.21792 1.01929 0.96195 0.95120 1.21458 0.93578 0.96811 0.95466 1.19728 0.96184 1.00643 0.98379 1.21498 0.95600 0.96112 0.94127 1.22080 0.95002 1.00392 1.01883 1.23196 1.00487 0.89777 0.88257 1.67682 1.10872 1.21920 1.15961 1.19450 0.90378 0.93031 0.91316 1.67682 1.11975 1.21476 1.12335 0.91355 0.93596 0.91014 0.91914 0.90464 0.80742 0.93109 0.92870 0.90228 0.84954 0.91215 0.82750 0.83286 0.83840 0.83743 0.81297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.61 37.16 0.28 -1.59 16 2 C 0.14 2.11 3.51 -67.37 -0.24 1.87 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 4 C -0.14 -2.25 4.86 -26.39 -0.13 -2.38 16 5 C 0.18 3.55 2.73 -67.89 -0.19 3.36 16 6 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 7 N -0.75 -17.91 4.92 -53.38 -0.26 -18.17 16 8 C -0.24 -6.83 10.41 -15.06 -0.16 -6.99 16 9 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 10 C 0.00 0.12 5.50 -17.44 -0.10 0.02 16 11 N -0.93 -29.60 13.97 55.49 0.78 -28.83 16 12 Si 0.88 22.44 27.73 -169.99 -4.71 17.73 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 15 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 16 C -0.15 -2.72 5.66 -26.61 -0.15 -2.87 16 17 C 0.08 1.20 5.98 -3.71 -0.02 1.18 16 18 N -0.57 -8.67 2.97 -165.88 -0.49 -9.16 16 19 C 0.56 8.32 7.48 -12.10 -0.09 8.23 16 20 O -0.53 -8.23 11.95 5.38 0.06 -8.17 16 21 C 0.15 1.95 6.45 -82.96 -0.54 1.42 16 22 C -0.13 -1.30 9.53 -39.44 -0.38 -1.68 16 23 C -0.05 -0.36 9.89 -39.28 -0.39 -0.75 16 24 C -0.14 -1.35 5.75 -106.68 -0.61 -1.97 16 25 C -0.05 -0.29 9.90 -39.23 -0.39 -0.68 16 26 C -0.17 -0.96 10.04 -39.73 -0.40 -1.36 16 27 C 0.16 1.26 11.14 -17.46 -0.19 1.06 16 28 N -0.46 -5.60 10.43 -12.59 -0.13 -5.73 16 29 C 0.30 3.75 7.62 -157.90 -1.20 2.55 16 30 N -0.42 -5.92 6.41 -9.18 -0.06 -5.98 16 31 H 0.07 1.01 6.76 -51.93 -0.35 0.66 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.02 6.72 -51.93 -0.35 0.68 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.36 8.55 5.66 -40.82 -0.23 8.31 16 37 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 40 H 0.13 2.11 4.00 -78.96 -0.32 1.79 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.15 1.33 7.78 -52.49 -0.41 0.92 16 43 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 45 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 46 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -35.13 367.76 -10.48 -45.60 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.32 Total: 7.73 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -4.88 Total: -0.57 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -0.17 Total: -67.87 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.06 Total: -8.17 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.13 -10.48 -45.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044614898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.515 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds