Wall clock time and date at job start Sat Apr 11 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.58520 * 2 1 4 4 C 1.53198 * 109.69896 * 239.63213 * 2 1 3 5 5 C 1.53047 * 109.30826 * 185.49530 * 4 2 1 6 6 H 1.08997 * 109.46298 * 301.37249 * 5 4 2 7 7 N 1.46500 * 109.45890 * 181.39537 * 5 4 2 8 8 C 1.36935 * 119.99944 * 154.97001 * 7 5 4 9 9 H 1.08012 * 119.99639 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00192 * 180.02562 * 8 7 5 11 11 N 1.31624 * 120.00017 * 180.02562 * 10 8 7 12 12 Si 1.86792 * 120.00052 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47091 * 89.99661 * 12 10 8 14 14 H 1.48499 * 109.47241 * 330.00366 * 12 10 8 15 15 H 1.48496 * 109.47302 * 210.00183 * 12 10 8 16 16 C 1.53045 * 109.52667 * 61.38382 * 5 4 2 17 17 C 1.53187 * 109.31322 * 298.63108 * 16 5 4 18 18 N 1.46921 * 108.78079 * 54.63195 * 17 16 5 19 19 C 1.34784 * 120.63135 * 126.41060 * 18 17 16 20 20 O 1.21499 * 119.99705 * 174.41666 * 19 18 17 21 21 C 1.48226 * 119.99842 * 354.41473 * 19 18 17 22 22 C 1.40570 * 119.74725 * 206.13852 * 21 19 18 23 23 N 1.31269 * 120.57196 * 180.02562 * 22 21 19 24 24 C 1.33782 * 119.80210 * 359.97438 * 23 22 21 25 25 C 1.40549 * 121.00026 * 180.02562 * 24 23 22 26 26 C 1.36071 * 119.75365 * 179.97438 * 25 24 23 27 27 C 1.39475 * 121.01889 * 0.02562 * 26 25 24 28 28 C 1.35990 * 120.98025 * 359.97438 * 27 26 25 29 29 C 1.40822 * 119.70166 * 359.97438 * 28 27 26 30 30 N 1.32172 * 119.74812 * 25.87197 * 21 19 18 31 31 H 1.08994 * 109.47386 * 310.29896 * 1 2 3 32 32 H 1.09011 * 109.46855 * 70.29914 * 1 2 3 33 33 H 1.08995 * 109.47494 * 190.29256 * 1 2 3 34 34 H 1.08998 * 109.48743 * 65.55546 * 4 2 1 35 35 H 1.09000 * 109.51208 * 305.44979 * 4 2 1 36 36 H 0.96999 * 120.00162 * 334.97551 * 7 5 4 37 37 H 0.96998 * 120.00277 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.49657 * 58.57957 * 16 5 4 39 39 H 1.08996 * 109.49366 * 178.67429 * 16 5 4 40 40 H 1.08998 * 109.58641 * 174.42311 * 17 16 5 41 41 H 1.08999 * 109.58562 * 294.84624 * 17 16 5 42 42 H 1.07995 * 119.71599 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.11990 * 359.95592 * 25 24 23 44 44 H 1.08003 * 119.49210 * 180.02562 * 26 25 24 45 45 H 1.07998 * 119.51360 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.15460 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7292 -1.2444 5 6 3.5706 -0.8444 -1.1674 6 1 4.0070 0.1519 -1.0963 7 7 4.0711 -1.5117 -2.3718 8 6 5.3553 -1.2916 -2.7929 9 1 5.9994 -0.6263 -2.2369 10 6 5.8294 -1.9234 -3.9343 11 7 7.0640 -1.7123 -4.3388 12 14 4.7153 -3.0734 -4.8963 13 1 3.9805 -2.3009 -5.9301 14 1 3.7440 -3.7104 -3.9711 15 1 5.5354 -4.1231 -5.5525 16 6 3.9602 -1.6608 0.0670 17 6 3.4653 -0.9426 1.3263 18 7 2.0225 -0.6981 1.1953 19 6 1.1671 -1.1061 2.1536 20 8 -0.0092 -0.8099 2.0840 21 6 1.6613 -1.9162 3.2923 22 6 0.7831 -2.7846 3.9636 23 7 1.2035 -3.5090 4.9744 24 6 2.4785 -3.4220 5.3701 25 6 2.9555 -4.1864 6.4488 26 6 4.2573 -4.0783 6.8296 27 6 5.1313 -3.2176 6.1656 28 6 4.7078 -2.4616 5.1176 29 6 3.3678 -2.5462 4.6927 30 7 2.9257 -1.8204 3.6653 31 1 -0.3634 0.6646 0.7837 32 1 -0.3633 0.3465 -0.9676 33 1 -0.3634 -1.0111 0.1836 34 1 1.7687 -0.1676 -2.1364 35 1 1.6081 -1.7261 -1.2903 36 1 3.4927 -2.1094 -2.8709 37 1 7.3954 -2.1540 -5.1362 38 1 3.5036 -2.6489 0.0086 39 1 5.0446 -1.7625 0.1085 40 1 3.6523 -1.5666 2.2002 41 1 3.9885 0.0075 1.4346 42 1 -0.2465 -2.8557 3.6457 43 1 2.2910 -4.8569 6.9736 44 1 4.6195 -4.6680 7.6588 45 1 6.1597 -3.1506 6.4886 46 1 5.3959 -1.7993 4.6134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044627808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:00 Heat of formation + Delta-G solvation = 82.718501 kcal Electronic energy + Delta-G solvation = -29519.269550 eV Core-core repulsion = 25603.662811 eV Total energy + Delta-G solvation = -3915.606739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.98227 -40.34187 -37.95385 -37.38877 -35.51324 -34.61813 -32.76739 -31.98242 -31.14714 -30.92820 -29.77903 -27.31999 -26.05596 -25.01559 -24.24973 -22.96071 -22.46405 -22.16463 -20.46377 -19.79338 -18.75758 -18.59367 -17.59895 -17.11631 -16.31581 -16.04762 -15.85580 -15.35699 -14.93533 -14.79598 -14.73796 -14.28805 -14.17657 -13.97505 -13.72491 -13.46662 -13.09130 -12.72459 -12.61307 -12.38474 -12.30768 -12.21832 -12.17126 -12.06752 -11.87681 -11.86307 -11.18896 -11.02175 -10.88770 -10.79976 -10.50241 -10.28391 -10.01116 -9.69667 -9.61763 -9.37280 -9.08823 -9.00318 -8.82038 -8.51969 -7.29354 -5.79807 -3.15360 -0.34628 0.05206 1.44565 2.11697 2.72687 2.82607 3.35666 3.38983 3.43589 3.51023 3.66086 3.70325 3.84232 4.28178 4.40737 4.50845 4.56798 4.71560 4.81975 4.90478 4.95684 5.07439 5.24495 5.32705 5.40268 5.44658 5.48950 5.55214 5.60658 5.65297 5.72033 5.78178 5.88884 5.90683 5.97910 6.02492 6.18797 6.24817 6.30358 6.31724 6.36859 6.44486 6.64224 6.75575 6.81388 6.95196 7.21619 7.39280 7.96016 7.99883 8.39347 9.17629 9.90517 10.10476 11.38482 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011884 B = 0.003230 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.571981 B = 8665.435652 C =10199.129257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.145 3.855 3 H 0.077 0.923 4 C -0.138 4.138 5 C 0.182 3.818 6 H 0.057 0.943 7 N -0.748 5.748 8 C -0.243 4.243 9 H 0.091 0.909 10 C 0.005 3.995 11 N -0.934 5.934 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.291 1.291 16 C -0.151 4.151 17 C 0.073 3.927 18 N -0.576 5.576 19 C 0.571 3.429 20 O -0.526 6.526 21 C 0.064 3.936 22 C 0.127 3.873 23 N -0.425 5.425 24 C 0.092 3.908 25 C -0.090 4.090 26 C -0.089 4.089 27 C -0.101 4.101 28 C -0.074 4.074 29 C 0.071 3.929 30 N -0.381 5.381 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.070 0.930 42 H 0.185 0.815 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.232 -2.033 23.233 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 H 0.095 0.905 4 C -0.177 4.177 5 C 0.072 3.928 6 H 0.075 0.925 7 N -0.390 5.390 8 C -0.373 4.373 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.582 5.582 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.204 1.204 15 H -0.218 1.218 16 C -0.192 4.192 17 C -0.049 4.049 18 N -0.307 5.307 19 C 0.356 3.644 20 O -0.403 6.403 21 C -0.091 4.091 22 C -0.048 4.048 23 N -0.138 5.138 24 C -0.033 4.033 25 C -0.109 4.109 26 C -0.109 4.109 27 C -0.121 4.121 28 C -0.093 4.093 29 C -0.055 4.055 30 N -0.100 5.100 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.147 0.853 41 H 0.088 0.912 42 H 0.202 0.798 43 H 0.159 0.841 44 H 0.155 0.845 45 H 0.157 0.843 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.471 -1.839 23.237 25.160 hybrid contribution -0.433 -0.955 -0.949 1.414 sum -9.904 -2.793 22.288 24.549 Atomic orbital electron populations 1.22201 0.92710 1.03919 1.00672 1.21400 0.95529 0.95454 0.83374 0.90485 1.22343 0.97649 1.00935 0.96796 1.20180 0.90657 0.95482 0.86436 0.92479 1.42798 1.13232 1.54711 1.28269 1.19071 0.87724 1.23200 1.07287 0.89169 1.24665 0.96104 1.00098 0.98228 1.69699 1.15037 1.47199 1.26218 0.86562 0.80328 0.81305 0.80394 1.21055 1.20420 1.21777 1.22647 1.02081 0.99535 0.94919 1.22966 0.78049 1.02235 1.01672 1.48146 1.08359 1.54978 1.19253 1.17683 0.85573 0.79651 0.81493 1.90854 1.16298 1.56960 1.76190 1.22682 0.90552 0.97878 0.98006 1.23907 1.01341 0.89699 0.89882 1.68812 1.13781 1.19601 1.11643 1.19777 0.90308 0.96361 0.96841 1.20825 0.96214 0.98705 0.95136 1.21117 0.92993 0.97467 0.99350 1.21074 1.00653 0.95254 0.95127 1.20956 0.92842 0.99096 0.96450 1.19784 0.96126 0.95855 0.93703 1.68636 1.13009 1.19047 1.09260 0.91094 0.93390 0.91254 0.90305 0.91880 0.80693 0.93060 0.92787 0.90247 0.85272 0.91183 0.79795 0.84074 0.84466 0.84307 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.64 37.16 0.28 -1.52 16 2 C 0.15 2.00 3.49 -67.60 -0.24 1.76 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.15 4.83 -26.60 -0.13 -2.28 16 5 C 0.18 3.37 2.73 -67.88 -0.19 3.18 16 6 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 7 N -0.75 -17.30 4.92 -53.38 -0.26 -17.57 16 8 C -0.24 -6.70 10.41 -15.06 -0.16 -6.85 16 9 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 10 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 11 N -0.93 -29.01 13.97 55.49 0.78 -28.24 16 12 Si 0.88 22.03 27.74 -169.99 -4.71 17.31 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 17 C 0.07 1.03 6.10 -3.72 -0.02 1.00 16 18 N -0.58 -8.07 2.97 -166.19 -0.49 -8.57 16 19 C 0.57 7.98 7.38 -12.15 -0.09 7.89 16 20 O -0.53 -7.87 12.19 5.37 0.07 -7.81 16 21 C 0.06 0.82 6.46 -82.74 -0.53 0.29 16 22 C 0.13 1.47 10.75 -16.91 -0.18 1.29 16 23 N -0.43 -5.03 10.45 -10.53 -0.11 -5.14 16 24 C 0.09 1.02 6.60 -84.70 -0.56 0.46 16 25 C -0.09 -0.73 9.98 -39.49 -0.39 -1.12 16 26 C -0.09 -0.54 9.95 -39.90 -0.40 -0.93 16 27 C -0.10 -0.64 9.95 -39.93 -0.40 -1.04 16 28 C -0.07 -0.64 9.99 -39.41 -0.39 -1.03 16 29 C 0.07 0.80 6.59 -84.79 -0.56 0.24 16 30 N -0.38 -4.76 6.51 -7.39 -0.05 -4.81 16 31 H 0.07 0.96 6.90 -51.93 -0.36 0.60 16 32 H 0.05 0.56 8.12 -51.92 -0.42 0.14 16 33 H 0.07 0.98 6.57 -51.93 -0.34 0.64 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.36 8.32 5.66 -40.82 -0.23 8.08 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.13 1.75 3.86 -81.33 -0.31 1.44 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.19 1.78 7.84 -52.49 -0.41 1.37 16 43 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 44 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 45 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 46 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -32.83 367.97 -9.76 -42.59 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.32 Total: 7.98 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -4.20 Total: -1.30 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -0.14 Total: -64.32 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.07 Total: -7.81 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.83 -9.76 -42.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044627808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.307 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds