Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.58520 * 2 1 4 4 C 1.53198 * 109.69896 * 239.63213 * 2 1 3 5 5 C 1.53047 * 109.30826 * 185.49530 * 4 2 1 6 6 H 1.08997 * 109.46298 * 301.37249 * 5 4 2 7 7 N 1.46500 * 109.45890 * 181.39537 * 5 4 2 8 8 C 1.36935 * 119.99944 * 154.97001 * 7 5 4 9 9 H 1.08012 * 119.99639 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00192 * 180.02562 * 8 7 5 11 11 N 1.31624 * 120.00017 * 180.02562 * 10 8 7 12 12 Si 1.86792 * 120.00052 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47091 * 89.99661 * 12 10 8 14 14 H 1.48499 * 109.47241 * 330.00366 * 12 10 8 15 15 H 1.48496 * 109.47302 * 210.00183 * 12 10 8 16 16 C 1.53045 * 109.52667 * 61.38382 * 5 4 2 17 17 C 1.53187 * 109.31322 * 298.63108 * 16 5 4 18 18 N 1.46921 * 108.78079 * 54.63195 * 17 16 5 19 19 C 1.34784 * 120.63135 * 126.41060 * 18 17 16 20 20 O 1.21499 * 119.99705 * 174.41666 * 19 18 17 21 21 C 1.48226 * 119.99842 * 354.41473 * 19 18 17 22 22 C 1.40570 * 119.74725 * 206.13852 * 21 19 18 23 23 N 1.31269 * 120.57196 * 180.02562 * 22 21 19 24 24 C 1.33782 * 119.80210 * 359.97438 * 23 22 21 25 25 C 1.40549 * 121.00026 * 180.02562 * 24 23 22 26 26 C 1.36071 * 119.75365 * 179.97438 * 25 24 23 27 27 C 1.39475 * 121.01889 * 0.02562 * 26 25 24 28 28 C 1.35990 * 120.98025 * 359.97438 * 27 26 25 29 29 C 1.40822 * 119.70166 * 359.97438 * 28 27 26 30 30 N 1.32172 * 119.74812 * 25.87197 * 21 19 18 31 31 H 1.08994 * 109.47386 * 310.29896 * 1 2 3 32 32 H 1.09011 * 109.46855 * 70.29914 * 1 2 3 33 33 H 1.08995 * 109.47494 * 190.29256 * 1 2 3 34 34 H 1.08998 * 109.48743 * 65.55546 * 4 2 1 35 35 H 1.09000 * 109.51208 * 305.44979 * 4 2 1 36 36 H 0.96999 * 120.00162 * 334.97551 * 7 5 4 37 37 H 0.96998 * 120.00277 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.49657 * 58.57957 * 16 5 4 39 39 H 1.08996 * 109.49366 * 178.67429 * 16 5 4 40 40 H 1.08998 * 109.58641 * 174.42311 * 17 16 5 41 41 H 1.08999 * 109.58562 * 294.84624 * 17 16 5 42 42 H 1.07995 * 119.71599 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.11990 * 359.95592 * 25 24 23 44 44 H 1.08003 * 119.49210 * 180.02562 * 26 25 24 45 45 H 1.07998 * 119.51360 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.15460 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7292 -1.2444 5 6 3.5706 -0.8444 -1.1674 6 1 4.0070 0.1519 -1.0963 7 7 4.0711 -1.5117 -2.3718 8 6 5.3553 -1.2916 -2.7929 9 1 5.9994 -0.6263 -2.2369 10 6 5.8294 -1.9234 -3.9343 11 7 7.0640 -1.7123 -4.3388 12 14 4.7153 -3.0734 -4.8963 13 1 3.9805 -2.3009 -5.9301 14 1 3.7440 -3.7104 -3.9711 15 1 5.5354 -4.1231 -5.5525 16 6 3.9602 -1.6608 0.0670 17 6 3.4653 -0.9426 1.3263 18 7 2.0225 -0.6981 1.1953 19 6 1.1671 -1.1061 2.1536 20 8 -0.0092 -0.8099 2.0840 21 6 1.6613 -1.9162 3.2923 22 6 0.7831 -2.7846 3.9636 23 7 1.2035 -3.5090 4.9744 24 6 2.4785 -3.4220 5.3701 25 6 2.9555 -4.1864 6.4488 26 6 4.2573 -4.0783 6.8296 27 6 5.1313 -3.2176 6.1656 28 6 4.7078 -2.4616 5.1176 29 6 3.3678 -2.5462 4.6927 30 7 2.9257 -1.8204 3.6653 31 1 -0.3634 0.6646 0.7837 32 1 -0.3633 0.3465 -0.9676 33 1 -0.3634 -1.0111 0.1836 34 1 1.7687 -0.1676 -2.1364 35 1 1.6081 -1.7261 -1.2903 36 1 3.4927 -2.1094 -2.8709 37 1 7.3954 -2.1540 -5.1362 38 1 3.5036 -2.6489 0.0086 39 1 5.0446 -1.7625 0.1085 40 1 3.6523 -1.5666 2.2002 41 1 3.9885 0.0075 1.4346 42 1 -0.2465 -2.8557 3.6457 43 1 2.2910 -4.8569 6.9736 44 1 4.6195 -4.6680 7.6588 45 1 6.1597 -3.1506 6.4886 46 1 5.3959 -1.7993 4.6134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044627808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = 61.772863 kcal Electronic energy + Delta-G solvation = -29520.177821 eV Core-core repulsion = 25603.662811 eV Total energy + Delta-G solvation = -3916.515010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.81817 -41.40119 -39.01391 -38.33038 -36.55531 -36.07003 -33.96579 -33.75743 -32.00147 -31.69604 -31.36814 -28.56543 -26.92394 -26.03281 -25.62292 -24.31747 -23.56283 -23.08929 -21.83897 -21.03384 -19.70989 -19.52014 -19.30785 -18.09563 -17.26570 -17.11287 -16.81462 -16.67593 -16.02946 -15.97745 -15.77876 -15.48226 -15.22789 -15.12062 -14.82914 -14.72196 -14.60858 -14.21943 -14.00876 -13.58958 -13.31626 -13.09588 -12.97967 -12.95988 -12.92769 -12.83757 -12.72102 -12.61578 -12.32253 -12.15714 -12.04013 -11.83057 -11.67959 -11.44603 -10.98042 -10.72575 -10.11894 -9.98445 -9.67331 -9.63529 -9.29537 -8.02290 -5.35360 -1.12509 -0.70090 0.71798 1.28783 1.37146 1.39341 1.46426 1.69078 1.95567 2.47722 2.64640 2.87857 2.95393 3.06476 3.29025 3.39295 3.47043 3.67625 3.80053 3.91266 4.04065 4.07469 4.11040 4.23065 4.24246 4.31048 4.34504 4.51633 4.55694 4.64552 4.76468 4.83421 4.86050 4.92787 4.96973 5.00251 5.10722 5.14210 5.21842 5.25164 5.33809 5.37275 5.42507 5.64467 5.69291 5.77596 5.93604 6.21627 6.22982 6.43512 6.91488 7.07382 7.83586 8.02635 9.19165 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011884 B = 0.003230 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.571981 B = 8665.435652 C =10199.129257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.147 3.853 3 H 0.087 0.913 4 C -0.127 4.127 5 C 0.176 3.824 6 H 0.049 0.951 7 N -0.752 5.752 8 C -0.225 4.225 9 H 0.060 0.940 10 C -0.063 4.063 11 N -0.983 5.983 12 Si 0.952 3.048 13 H -0.278 1.278 14 H -0.257 1.257 15 H -0.297 1.297 16 C -0.139 4.139 17 C 0.085 3.915 18 N -0.581 5.581 19 C 0.573 3.427 20 O -0.538 6.538 21 C 0.044 3.956 22 C 0.119 3.881 23 N -0.436 5.436 24 C 0.075 3.925 25 C -0.105 4.105 26 C -0.069 4.069 27 C -0.085 4.085 28 C -0.093 4.093 29 C 0.051 3.949 30 N -0.391 5.391 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.363 0.637 37 H 0.257 0.743 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.140 0.860 41 H 0.077 0.923 42 H 0.196 0.804 43 H 0.156 0.844 44 H 0.177 0.823 45 H 0.174 0.826 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 -3.098 25.390 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.044 3.956 3 H 0.105 0.895 4 C -0.166 4.166 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.394 5.394 8 C -0.356 4.356 9 H 0.078 0.922 10 C -0.254 4.254 11 N -0.634 5.634 12 Si 0.780 3.220 13 H -0.204 1.204 14 H -0.182 1.182 15 H -0.224 1.224 16 C -0.180 4.180 17 C -0.038 4.038 18 N -0.312 5.312 19 C 0.359 3.641 20 O -0.416 6.416 21 C -0.111 4.111 22 C -0.055 4.055 23 N -0.149 5.149 24 C -0.050 4.050 25 C -0.124 4.124 26 C -0.089 4.089 27 C -0.105 4.105 28 C -0.113 4.113 29 C -0.075 4.075 30 N -0.110 5.110 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.196 0.804 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.156 0.844 41 H 0.095 0.905 42 H 0.212 0.788 43 H 0.173 0.827 44 H 0.195 0.805 45 H 0.192 0.808 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.233 -2.888 25.434 27.567 hybrid contribution -0.079 -0.621 -1.374 1.510 sum -10.312 -3.509 24.060 26.411 Atomic orbital electron populations 1.22071 0.91806 1.03147 1.01382 1.21417 0.96112 0.95597 0.82475 0.89511 1.22213 0.94932 1.01285 0.98138 1.20407 0.92750 0.94779 0.85280 0.93253 1.42824 1.11684 1.55140 1.29748 1.19029 0.88965 1.21309 1.06307 0.92187 1.25437 0.97616 1.02569 0.99798 1.69872 1.17286 1.49174 1.27071 0.85459 0.78572 0.78959 0.79055 1.20406 1.18206 1.22437 1.22441 1.00768 0.99177 0.95625 1.22860 0.78237 1.02406 1.00276 1.48151 1.08202 1.55297 1.19516 1.17821 0.85332 0.79294 0.81628 1.90839 1.16729 1.57364 1.76667 1.22489 0.91194 0.98980 0.98407 1.24025 1.01709 0.89756 0.90025 1.68827 1.14519 1.19829 1.11770 1.20229 0.90073 0.96913 0.97764 1.21126 0.97615 0.98933 0.94693 1.21620 0.91797 0.96262 0.99233 1.21555 1.02274 0.93316 0.93330 1.21199 0.91915 1.00400 0.97762 1.20157 0.97374 0.96154 0.93782 1.68440 1.12952 1.19509 1.10077 0.91533 0.91802 0.92396 0.89631 0.92055 0.80391 0.93417 0.93566 0.92204 0.84413 0.90509 0.78755 0.82659 0.80518 0.80837 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 7.64 71.98 0.55 -2.60 16 2 C 0.15 3.88 3.49 44.98 0.16 4.03 16 3 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.13 -3.80 4.83 30.68 0.15 -3.65 16 5 C 0.18 6.48 2.73 45.02 0.12 6.60 16 6 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 7 N -0.75 -34.58 4.92 -322.79 -1.59 -36.17 16 8 C -0.23 -12.63 10.41 84.03 0.87 -11.75 16 9 H 0.06 3.67 8.06 -2.90 -0.02 3.64 16 10 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 11 N -0.98 -62.70 13.97 21.65 0.30 -62.40 16 12 Si 0.95 45.66 27.74 68.60 1.90 47.56 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.26 -11.30 6.52 99.48 0.65 -10.65 16 15 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 16 C -0.14 -4.73 5.66 30.67 0.17 -4.55 16 17 C 0.08 2.36 6.10 86.36 0.53 2.89 16 18 N -0.58 -15.98 2.97 -798.00 -2.37 -18.35 16 19 C 0.57 15.94 7.38 86.90 0.64 16.58 16 20 O -0.54 -15.97 12.19 -3.71 -0.05 -16.02 16 21 C 0.04 1.13 6.46 42.32 0.27 1.40 16 22 C 0.12 2.80 10.75 85.35 0.92 3.71 16 23 N -0.44 -10.21 10.45 -187.21 -1.96 -12.17 16 24 C 0.08 1.59 6.60 40.35 0.27 1.86 16 25 C -0.10 -1.44 9.98 22.33 0.22 -1.22 16 26 C -0.07 -0.55 9.95 22.06 0.22 -0.33 16 27 C -0.09 -0.76 9.95 22.05 0.22 -0.54 16 28 C -0.09 -1.45 9.99 22.38 0.22 -1.22 16 29 C 0.05 1.12 6.59 40.48 0.27 1.39 16 30 N -0.39 -9.74 6.51 -177.29 -1.15 -10.90 16 31 H 0.07 1.73 6.90 -2.39 -0.02 1.71 16 32 H 0.06 1.37 8.12 -2.38 -0.02 1.35 16 33 H 0.06 1.58 6.57 -2.39 -0.02 1.57 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.36 16.28 5.66 -92.71 -0.52 15.76 16 37 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.14 3.73 3.86 -60.44 -0.23 3.50 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.20 3.84 7.84 -2.91 -0.02 3.82 16 43 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 44 H 0.18 0.06 8.06 -2.91 -0.02 0.04 16 45 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 46 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -72.94 367.97 1.56 -71.38 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.21 Total: 27.69 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.27 Total: 9.38 kcal Atomic # 7 Polarization: -133.22 SS G_CDS: -6.77 Total: -139.99 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.05 Total: -16.02 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Total: -72.94 1.56 -71.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044627808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.153 kcal (2) G-P(sol) polarization free energy of solvation -72.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds