Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.70073 * 2 1 4 4 C 1.53186 * 109.58651 * 239.64811 * 2 1 3 5 5 C 1.53040 * 109.31130 * 294.84609 * 4 2 1 6 6 H 1.08998 * 109.46047 * 58.65650 * 5 4 2 7 7 N 1.46501 * 109.45947 * 178.61186 * 5 4 2 8 8 C 1.36942 * 119.99932 * 204.99712 * 7 5 4 9 9 H 1.07999 * 120.00072 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99670 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00321 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99977 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46773 * 90.00224 * 12 10 8 14 14 H 1.48501 * 109.47637 * 210.00317 * 12 10 8 15 15 H 1.48498 * 109.47040 * 330.00666 * 12 10 8 16 16 C 1.53041 * 109.54000 * 298.63239 * 5 4 2 17 17 C 1.52768 * 109.38018 * 61.23799 * 16 5 4 18 18 N 1.46922 * 109.01048 * 305.59229 * 17 16 5 19 19 C 1.34777 * 120.63299 * 233.58274 * 18 17 16 20 20 O 1.21503 * 120.00531 * 180.02562 * 19 18 17 21 21 C 1.48233 * 119.99524 * 0.04017 * 19 18 17 22 22 C 1.40573 * 119.75127 * 158.80277 * 21 19 18 23 23 N 1.31257 * 120.57943 * 179.97438 * 22 21 19 24 24 C 1.33787 * 119.80111 * 0.02562 * 23 22 21 25 25 C 1.40546 * 121.00052 * 180.02562 * 24 23 22 26 26 C 1.36077 * 119.75174 * 179.97438 * 25 24 23 27 27 C 1.39477 * 121.01761 * 359.97438 * 26 25 24 28 28 C 1.35996 * 120.98409 * 359.97438 * 27 26 25 29 29 C 1.40824 * 119.69528 * 0.02562 * 28 27 26 30 30 N 1.32171 * 119.74873 * 338.78081 * 21 19 18 31 31 H 1.09008 * 109.47027 * 299.64230 * 1 2 3 32 32 H 1.09001 * 109.47263 * 59.64190 * 1 2 3 33 33 H 1.09002 * 109.47190 * 179.64372 * 1 2 3 34 34 H 1.09004 * 109.49844 * 54.79201 * 4 2 1 35 35 H 1.08996 * 109.50061 * 174.85709 * 4 2 1 36 36 H 0.97003 * 119.99862 * 25.00483 * 7 5 4 37 37 H 0.96996 * 120.00162 * 179.97438 * 11 10 8 38 38 H 1.08993 * 109.49809 * 181.31840 * 16 5 4 39 39 H 1.09003 * 109.49600 * 301.42028 * 16 5 4 40 40 H 1.08998 * 109.50971 * 185.70789 * 17 16 5 41 41 H 1.08998 * 109.42588 * 65.42377 * 17 16 5 42 42 H 1.08003 * 119.70700 * 0.24753 * 22 21 19 43 43 H 1.08003 * 120.12542 * 359.95440 * 25 24 23 44 44 H 1.08001 * 119.49341 * 179.97438 * 26 25 24 45 45 H 1.07996 * 119.51223 * 180.02562 * 27 26 25 46 46 H 1.07996 * 120.15478 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 1.6414 -2.2040 -1.1702 6 1 0.5565 -2.2814 -1.0993 7 7 2.1023 -2.8976 -2.3755 8 6 1.4649 -4.0338 -2.7975 9 1 0.6223 -4.4183 -2.2421 10 6 1.9019 -4.6913 -3.9393 11 7 2.9292 -4.2230 -4.6160 12 14 1.0330 -6.2416 -4.5147 13 1 -0.0649 -5.8770 -5.4458 14 1 2.0029 -7.1223 -5.2138 15 1 0.4701 -6.9578 -3.3419 16 6 2.2801 -2.8464 0.0634 17 6 1.7741 -2.1421 1.3210 18 7 2.0226 -0.6995 1.1945 19 6 2.6945 -0.0317 2.1531 20 8 2.8931 1.1614 2.0370 21 6 3.1914 -0.7528 3.3491 22 6 4.2400 -0.2051 4.1083 23 7 4.6923 -0.8295 5.1705 24 6 4.1522 -1.9979 5.5352 25 6 4.6166 -2.6878 6.6683 26 6 4.0484 -3.8742 7.0164 27 6 3.0078 -4.4205 6.2654 28 6 2.5301 -3.7830 5.1632 29 6 3.0920 -2.5528 4.7705 30 7 2.6448 -1.9058 3.6938 31 1 -0.3633 0.5083 0.8932 32 1 -0.3634 0.5194 -0.8868 33 1 -0.3634 -1.0277 -0.0064 34 1 1.6074 -0.2784 -2.1368 35 1 3.1296 -0.6497 -1.2917 36 1 2.8589 -2.5521 -2.8745 37 1 3.2347 -4.6826 -5.4136 38 1 2.0124 -3.9022 0.1035 39 1 3.3640 -2.7473 0.0051 40 1 2.3026 -2.5288 2.1924 41 1 0.7045 -2.3203 1.4309 42 1 4.6744 0.7400 3.8174 43 1 5.4216 -2.2779 7.2603 44 1 4.4087 -4.4010 7.8877 45 1 2.5743 -5.3635 6.5640 46 1 1.7235 -4.2180 4.5918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044627811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 65.580695 kcal Electronic energy + Delta-G solvation = -29434.881248 eV Core-core repulsion = 25518.531358 eV Total energy + Delta-G solvation = -3916.349890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94500 -40.13886 -38.02055 -37.37712 -35.46441 -34.48721 -32.50798 -31.82403 -31.14246 -30.89617 -29.32665 -27.31055 -26.21619 -24.97832 -24.11163 -23.07525 -22.55052 -22.16018 -20.89559 -19.15711 -18.74247 -18.33503 -17.29200 -16.97607 -16.52784 -15.85812 -15.77604 -15.26965 -14.93230 -14.80329 -14.64033 -14.21492 -14.03991 -13.88825 -13.57297 -13.49273 -13.10979 -12.85439 -12.61544 -12.35558 -12.24261 -12.22865 -12.13949 -12.06034 -11.77416 -11.31709 -11.10420 -10.91485 -10.85942 -10.68024 -10.40306 -10.37459 -10.20112 -9.75230 -9.62321 -9.36356 -9.20639 -8.99326 -8.79987 -8.52080 -6.96970 -5.78142 -3.07061 -0.33533 0.06933 1.46003 2.13792 2.79133 2.87557 3.41483 3.46528 3.48406 3.53158 3.68618 3.72356 3.86323 4.30932 4.42712 4.52838 4.56747 4.72756 4.83530 4.93170 5.08897 5.22587 5.32662 5.40182 5.42600 5.46797 5.51958 5.62799 5.65525 5.72789 5.74702 5.81453 5.91080 5.92891 5.98519 6.12036 6.22364 6.28630 6.33375 6.43935 6.47946 6.54706 6.64231 6.77206 6.91964 7.06874 7.24044 7.44616 7.67614 8.02509 8.40202 9.51288 10.09320 10.43969 11.44481 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.003088 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.627930 B = 9066.116021 C =10630.717766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.098 0.902 4 C -0.133 4.133 5 C 0.178 3.822 6 H 0.051 0.949 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.152 4.152 17 C 0.077 3.923 18 N -0.572 5.572 19 C 0.571 3.429 20 O -0.536 6.536 21 C 0.066 3.934 22 C 0.128 3.872 23 N -0.426 5.426 24 C 0.093 3.907 25 C -0.089 4.089 26 C -0.089 4.089 27 C -0.102 4.102 28 C -0.074 4.074 29 C 0.070 3.930 30 N -0.379 5.379 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.186 0.814 43 H 0.142 0.858 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 4.022 23.809 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.116 0.884 4 C -0.172 4.172 5 C 0.068 3.932 6 H 0.069 0.931 7 N -0.365 5.365 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.210 4.210 11 N -0.581 5.581 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.193 4.193 17 C -0.045 4.045 18 N -0.303 5.303 19 C 0.356 3.644 20 O -0.413 6.413 21 C -0.089 4.089 22 C -0.047 4.047 23 N -0.139 5.139 24 C -0.032 4.032 25 C -0.109 4.109 26 C -0.109 4.109 27 C -0.122 4.122 28 C -0.093 4.093 29 C -0.056 4.056 30 N -0.098 5.098 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.085 0.915 42 H 0.203 0.797 43 H 0.159 0.841 44 H 0.155 0.845 45 H 0.156 0.844 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.010 4.360 23.796 24.192 hybrid contribution -0.155 -0.967 -0.689 1.197 sum -0.165 3.393 23.107 23.355 Atomic orbital electron populations 1.22134 0.94663 1.02962 1.01980 1.21320 0.94315 0.97119 0.83652 0.88427 1.22218 1.01379 0.97340 0.96281 1.20227 0.96813 0.89069 0.87110 0.93082 1.42442 1.37950 1.29327 1.26742 1.19226 1.10146 1.01102 1.06457 0.91206 1.24742 0.98500 0.99481 0.98230 1.69662 1.27528 1.41381 1.19511 0.86216 0.78558 0.83074 0.78489 1.21737 1.21826 1.20782 1.22619 1.00925 1.00593 0.95149 1.22802 1.02000 0.78259 1.01457 1.48153 1.52362 1.10356 1.19413 1.17639 0.78734 0.86170 0.81877 1.90783 1.58504 1.13804 1.78228 1.22540 0.96330 0.92413 0.97665 1.23939 0.91874 0.99700 0.89149 1.68823 1.25350 1.06271 1.13438 1.19789 0.94202 0.92705 0.96527 1.20826 1.00350 0.94742 0.94940 1.21113 0.95299 0.94986 0.99545 1.21066 0.96281 1.00290 0.94562 1.20946 0.99534 0.92097 0.96712 1.19792 0.95912 0.97048 0.92828 1.68726 1.25135 1.05063 1.10843 0.92819 0.91146 0.91517 0.90364 0.91820 0.78327 0.93519 0.90730 0.92688 0.85737 0.91460 0.79668 0.84066 0.84486 0.84360 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.03 37.16 0.34 -1.72 16 2 C 0.14 2.02 3.21 -67.60 -0.22 1.80 16 3 H 0.10 1.44 7.00 -51.93 -0.36 1.08 16 4 C -0.13 -2.22 5.02 -26.61 -0.13 -2.35 16 5 C 0.18 3.41 2.53 -67.89 -0.17 3.24 16 6 H 0.05 0.99 6.43 -51.93 -0.33 0.66 16 7 N -0.72 -17.78 5.12 -53.38 -0.27 -18.05 16 8 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 11 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 12 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C -0.15 -2.65 5.64 -26.83 -0.15 -2.80 16 17 C 0.08 1.12 5.56 -3.93 -0.02 1.10 16 18 N -0.57 -8.42 2.68 -166.45 -0.45 -8.87 16 19 C 0.57 8.54 7.63 -12.15 -0.09 8.45 16 20 O -0.54 -8.92 15.93 5.36 0.09 -8.83 16 21 C 0.07 0.88 6.48 -82.73 -0.54 0.35 16 22 C 0.13 1.56 10.75 -16.92 -0.18 1.38 16 23 N -0.43 -5.16 10.45 -10.52 -0.11 -5.27 16 24 C 0.09 1.04 6.60 -84.70 -0.56 0.48 16 25 C -0.09 -0.73 9.98 -39.49 -0.39 -1.13 16 26 C -0.09 -0.54 9.95 -39.90 -0.40 -0.94 16 27 C -0.10 -0.65 9.95 -39.92 -0.40 -1.04 16 28 C -0.07 -0.64 9.99 -39.41 -0.39 -1.03 16 29 C 0.07 0.80 6.60 -84.79 -0.56 0.24 16 30 N -0.38 -4.85 6.44 -7.39 -0.05 -4.90 16 31 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.89 5.74 -51.93 -0.30 0.59 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.13 1.74 3.97 -79.87 -0.32 1.43 16 41 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16 42 H 0.19 1.92 7.77 -52.48 -0.41 1.51 16 43 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 46 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -32.35 372.33 -9.80 -42.15 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.20 Total: 9.40 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -4.11 Total: -1.07 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -0.15 Total: -64.33 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.35 -9.80 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044627811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.730 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds