Wall clock time and date at job start Sat Apr 11 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.70073 * 2 1 4 4 C 1.53186 * 109.58651 * 239.64811 * 2 1 3 5 5 C 1.53040 * 109.31130 * 294.84609 * 4 2 1 6 6 H 1.08998 * 109.46047 * 58.65650 * 5 4 2 7 7 N 1.46501 * 109.45947 * 178.61186 * 5 4 2 8 8 C 1.36942 * 119.99932 * 204.99712 * 7 5 4 9 9 H 1.07999 * 120.00072 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99670 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00321 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99977 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46773 * 90.00224 * 12 10 8 14 14 H 1.48501 * 109.47637 * 210.00317 * 12 10 8 15 15 H 1.48498 * 109.47040 * 330.00666 * 12 10 8 16 16 C 1.53041 * 109.54000 * 298.63239 * 5 4 2 17 17 C 1.52768 * 109.38018 * 61.23799 * 16 5 4 18 18 N 1.46922 * 109.01048 * 305.59229 * 17 16 5 19 19 C 1.34777 * 120.63299 * 233.58274 * 18 17 16 20 20 O 1.21503 * 120.00531 * 180.02562 * 19 18 17 21 21 C 1.48233 * 119.99524 * 0.04017 * 19 18 17 22 22 C 1.40573 * 119.75127 * 158.80277 * 21 19 18 23 23 N 1.31257 * 120.57943 * 179.97438 * 22 21 19 24 24 C 1.33787 * 119.80111 * 0.02562 * 23 22 21 25 25 C 1.40546 * 121.00052 * 180.02562 * 24 23 22 26 26 C 1.36077 * 119.75174 * 179.97438 * 25 24 23 27 27 C 1.39477 * 121.01761 * 359.97438 * 26 25 24 28 28 C 1.35996 * 120.98409 * 359.97438 * 27 26 25 29 29 C 1.40824 * 119.69528 * 0.02562 * 28 27 26 30 30 N 1.32171 * 119.74873 * 338.78081 * 21 19 18 31 31 H 1.09008 * 109.47027 * 299.64230 * 1 2 3 32 32 H 1.09001 * 109.47263 * 59.64190 * 1 2 3 33 33 H 1.09002 * 109.47190 * 179.64372 * 1 2 3 34 34 H 1.09004 * 109.49844 * 54.79201 * 4 2 1 35 35 H 1.08996 * 109.50061 * 174.85709 * 4 2 1 36 36 H 0.97003 * 119.99862 * 25.00483 * 7 5 4 37 37 H 0.96996 * 120.00162 * 179.97438 * 11 10 8 38 38 H 1.08993 * 109.49809 * 181.31840 * 16 5 4 39 39 H 1.09003 * 109.49600 * 301.42028 * 16 5 4 40 40 H 1.08998 * 109.50971 * 185.70789 * 17 16 5 41 41 H 1.08998 * 109.42588 * 65.42377 * 17 16 5 42 42 H 1.08003 * 119.70700 * 0.24753 * 22 21 19 43 43 H 1.08003 * 120.12542 * 359.95440 * 25 24 23 44 44 H 1.08001 * 119.49341 * 179.97438 * 26 25 24 45 45 H 1.07996 * 119.51223 * 180.02562 * 27 26 25 46 46 H 1.07996 * 120.15478 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 1.6414 -2.2040 -1.1702 6 1 0.5565 -2.2814 -1.0993 7 7 2.1023 -2.8976 -2.3755 8 6 1.4649 -4.0338 -2.7975 9 1 0.6223 -4.4183 -2.2421 10 6 1.9019 -4.6913 -3.9393 11 7 2.9292 -4.2230 -4.6160 12 14 1.0330 -6.2416 -4.5147 13 1 -0.0649 -5.8770 -5.4458 14 1 2.0029 -7.1223 -5.2138 15 1 0.4701 -6.9578 -3.3419 16 6 2.2801 -2.8464 0.0634 17 6 1.7741 -2.1421 1.3210 18 7 2.0226 -0.6995 1.1945 19 6 2.6945 -0.0317 2.1531 20 8 2.8931 1.1614 2.0370 21 6 3.1914 -0.7528 3.3491 22 6 4.2400 -0.2051 4.1083 23 7 4.6923 -0.8295 5.1705 24 6 4.1522 -1.9979 5.5352 25 6 4.6166 -2.6878 6.6683 26 6 4.0484 -3.8742 7.0164 27 6 3.0078 -4.4205 6.2654 28 6 2.5301 -3.7830 5.1632 29 6 3.0920 -2.5528 4.7705 30 7 2.6448 -1.9058 3.6938 31 1 -0.3633 0.5083 0.8932 32 1 -0.3634 0.5194 -0.8868 33 1 -0.3634 -1.0277 -0.0064 34 1 1.6074 -0.2784 -2.1368 35 1 3.1296 -0.6497 -1.2917 36 1 2.8589 -2.5521 -2.8745 37 1 3.2347 -4.6826 -5.4136 38 1 2.0124 -3.9022 0.1035 39 1 3.3640 -2.7473 0.0051 40 1 2.3026 -2.5288 2.1924 41 1 0.7045 -2.3203 1.4309 42 1 4.6744 0.7400 3.8174 43 1 5.4216 -2.2779 7.2603 44 1 4.4087 -4.4010 7.8877 45 1 2.5743 -5.3635 6.5640 46 1 1.7235 -4.2180 4.5918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044627811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:01 Heat of formation + Delta-G solvation = 45.329523 kcal Electronic energy + Delta-G solvation = -29435.759404 eV Core-core repulsion = 25518.531358 eV Total energy + Delta-G solvation = -3917.228047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.80648 -41.28190 -39.15529 -38.29111 -36.51076 -36.03365 -33.88885 -33.40793 -31.97699 -31.61851 -31.00233 -28.66404 -27.09108 -26.02722 -25.65680 -24.43675 -23.54596 -23.18606 -22.23979 -20.23383 -19.57960 -19.50180 -18.93107 -18.21226 -17.64281 -16.84218 -16.73478 -16.65867 -16.00215 -15.81054 -15.65084 -15.41240 -15.31460 -15.16741 -14.92276 -14.74201 -14.55415 -14.14832 -13.94137 -13.53417 -13.08822 -12.98037 -12.94020 -12.91681 -12.90590 -12.81413 -12.72486 -12.48241 -12.31921 -12.17114 -12.03456 -11.85829 -11.62571 -11.49268 -11.12808 -10.89578 -10.13720 -10.09151 -9.74825 -9.62620 -8.98773 -7.92518 -5.21362 -1.14352 -0.70892 0.71524 1.27492 1.48251 1.49725 1.57914 1.67862 1.96234 2.56773 2.63078 2.87940 2.94712 3.06051 3.38152 3.41003 3.66896 3.73541 3.82998 3.92604 4.06461 4.10365 4.14050 4.24338 4.24529 4.33504 4.38144 4.52392 4.56780 4.65578 4.77645 4.84430 4.86269 4.92433 4.99380 5.02542 5.05129 5.13942 5.20128 5.24595 5.30234 5.34177 5.49863 5.53154 5.61020 5.68720 5.92178 6.20785 6.29035 6.42948 6.86019 7.34853 8.10267 8.33838 9.31201 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.003088 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.627930 B = 9066.116021 C =10630.717766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.143 3.857 3 H 0.097 0.903 4 C -0.123 4.123 5 C 0.175 3.825 6 H 0.056 0.944 7 N -0.738 5.738 8 C -0.234 4.234 9 H 0.079 0.921 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.971 3.029 13 H -0.288 1.288 14 H -0.299 1.299 15 H -0.267 1.267 16 C -0.140 4.140 17 C 0.090 3.910 18 N -0.576 5.576 19 C 0.572 3.428 20 O -0.558 6.558 21 C 0.044 3.956 22 C 0.119 3.881 23 N -0.436 5.436 24 C 0.076 3.924 25 C -0.105 4.105 26 C -0.068 4.068 27 C -0.085 4.085 28 C -0.091 4.091 29 C 0.051 3.949 30 N -0.386 5.386 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.370 0.630 37 H 0.249 0.751 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.193 0.807 43 H 0.155 0.845 44 H 0.178 0.822 45 H 0.176 0.824 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 2.257 26.825 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.115 0.885 4 C -0.162 4.162 5 C 0.067 3.933 6 H 0.074 0.926 7 N -0.377 5.377 8 C -0.366 4.366 9 H 0.097 0.903 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.800 3.200 13 H -0.215 1.215 14 H -0.226 1.226 15 H -0.191 1.191 16 C -0.181 4.181 17 C -0.033 4.033 18 N -0.306 5.306 19 C 0.359 3.641 20 O -0.437 6.437 21 C -0.110 4.110 22 C -0.055 4.055 23 N -0.149 5.149 24 C -0.049 4.049 25 C -0.125 4.125 26 C -0.087 4.087 27 C -0.104 4.104 28 C -0.110 4.110 29 C -0.075 4.075 30 N -0.105 5.105 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.201 0.799 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.152 0.848 41 H 0.099 0.901 42 H 0.210 0.790 43 H 0.173 0.827 44 H 0.195 0.805 45 H 0.193 0.807 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.166 2.621 26.853 27.006 hybrid contribution 0.220 -0.512 -1.395 1.502 sum -0.946 2.109 25.458 25.563 Atomic orbital electron populations 1.22083 0.92919 1.03000 1.03049 1.21272 0.95581 0.96583 0.82569 0.88500 1.22084 1.00521 0.95955 0.97656 1.20436 0.96960 0.90131 0.85772 0.92632 1.42668 1.37494 1.29231 1.28269 1.19627 1.09702 1.01304 1.05940 0.90318 1.25551 0.99660 1.02849 0.98936 1.69829 1.29508 1.42955 1.20054 0.85174 0.77170 0.79453 0.78195 1.21532 1.22619 1.19126 1.22414 0.99584 1.00188 0.95891 1.22726 1.02757 0.77863 0.99919 1.48182 1.52542 1.10376 1.19479 1.17858 0.78045 0.85998 0.82248 1.90755 1.59238 1.14769 1.78915 1.22254 0.97668 0.93335 0.97788 1.24000 0.91985 1.00152 0.89380 1.68834 1.25699 1.06996 1.13399 1.20266 0.94380 0.92668 0.97568 1.21126 1.01305 0.95649 0.94370 1.21634 0.93676 0.93637 0.99794 1.21566 0.95177 1.00881 0.92804 1.21208 1.00323 0.91441 0.98076 1.20193 0.96545 0.98082 0.92723 1.68515 1.25304 1.04913 1.11741 0.91879 0.89992 0.91887 0.90356 0.93231 0.79920 0.94204 0.91744 0.94557 0.84811 0.90099 0.78988 0.82694 0.80462 0.80688 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.03 71.98 0.65 -3.09 16 2 C 0.14 4.13 3.21 44.97 0.14 4.28 16 3 H 0.10 2.87 7.00 -2.39 -0.02 2.85 16 4 C -0.12 -4.17 5.02 30.67 0.15 -4.02 16 5 C 0.18 6.76 2.53 45.02 0.11 6.88 16 6 H 0.06 2.12 6.43 -2.39 -0.02 2.10 16 7 N -0.74 -36.91 5.12 -322.81 -1.65 -38.56 16 8 C -0.23 -12.73 9.93 84.03 0.83 -11.90 16 9 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 10 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 11 N -0.97 -59.75 13.06 21.65 0.28 -59.46 16 12 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 15 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 16 C -0.14 -4.94 5.64 30.53 0.17 -4.76 16 17 C 0.09 2.56 5.56 86.22 0.48 3.04 16 18 N -0.58 -16.95 2.68 -798.81 -2.14 -19.09 16 19 C 0.57 17.43 7.63 86.90 0.66 18.09 16 20 O -0.56 -18.99 15.93 -3.72 -0.06 -19.05 16 21 C 0.04 1.19 6.48 42.32 0.27 1.46 16 22 C 0.12 2.98 10.75 85.35 0.92 3.90 16 23 N -0.44 -10.59 10.45 -187.21 -1.96 -12.55 16 24 C 0.08 1.64 6.60 40.34 0.27 1.91 16 25 C -0.11 -1.46 9.98 22.33 0.22 -1.23 16 26 C -0.07 -0.52 9.95 22.07 0.22 -0.30 16 27 C -0.08 -0.70 9.95 22.05 0.22 -0.48 16 28 C -0.09 -1.36 9.99 22.38 0.22 -1.14 16 29 C 0.05 1.12 6.60 40.48 0.27 1.38 16 30 N -0.39 -9.79 6.44 -177.28 -1.14 -10.94 16 31 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.59 5.74 -2.39 -0.01 1.57 16 34 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.37 20.25 7.80 -92.71 -0.72 19.53 16 37 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.14 3.70 3.97 -57.56 -0.23 3.47 16 41 H 0.08 2.10 7.52 -2.39 -0.02 2.08 16 42 H 0.19 4.24 7.77 -2.91 -0.02 4.22 16 43 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 44 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16 45 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 46 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -71.82 372.33 1.72 -70.10 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.08 Total: 31.83 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.29 Total: 10.04 kcal Atomic # 7 Polarization: -133.99 SS G_CDS: -6.61 Total: -140.60 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.06 Total: -19.05 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -71.82 1.72 -70.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044627811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.426 kcal (2) G-P(sol) polarization free energy of solvation -71.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds