Wall clock time and date at job start Sat Apr 11 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.70296 * 2 1 4 4 C 1.53630 * 109.66516 * 120.59341 * 2 1 3 5 5 C 1.53044 * 109.23983 * 174.54497 * 4 2 1 6 6 H 1.08999 * 109.44514 * 58.52522 * 5 4 2 7 7 N 1.46499 * 109.45677 * 178.49025 * 5 4 2 8 8 C 1.36938 * 120.00027 * 205.07234 * 7 5 4 9 9 H 1.08002 * 119.99399 * 359.97438 * 8 7 5 10 10 C 1.38808 * 119.99886 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00218 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99745 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46545 * 90.00076 * 12 10 8 14 14 H 1.48498 * 109.47073 * 210.00053 * 12 10 8 15 15 H 1.48500 * 109.47277 * 330.00552 * 12 10 8 16 16 C 1.53038 * 109.53854 * 298.50968 * 5 4 2 17 17 C 1.53190 * 109.31265 * 61.36776 * 16 5 4 18 18 N 1.46930 * 108.77783 * 305.36188 * 17 16 5 19 19 C 1.34770 * 120.63309 * 233.58997 * 18 17 16 20 20 O 1.21547 * 119.99897 * 184.22401 * 19 18 17 21 21 C 1.47895 * 120.00027 * 4.21599 * 19 18 17 22 22 N 1.32130 * 120.03847 * 316.11721 * 21 19 18 23 23 C 1.31981 * 122.76977 * 179.97438 * 22 21 19 24 24 C 1.37771 * 121.72988 * 0.02562 * 23 22 21 25 25 C 1.40391 * 118.73122 * 359.97438 * 24 23 22 26 26 C 1.40638 * 122.28719 * 180.02562 * 25 24 23 27 27 C 1.36639 * 117.95372 * 179.97438 * 26 25 24 28 28 C 1.39406 * 119.92581 * 359.97438 * 27 26 25 29 29 N 1.31208 * 121.84974 * 0.02562 * 28 27 26 30 30 C 1.33257 * 121.22324 * 0.02562 * 29 28 27 31 31 H 1.09000 * 109.47515 * 172.33172 * 1 2 3 32 32 H 1.09007 * 109.46546 * 292.33052 * 1 2 3 33 33 H 1.08999 * 109.47023 * 52.33062 * 1 2 3 34 34 H 1.08998 * 109.62938 * 54.55579 * 4 2 1 35 35 H 1.09002 * 109.45378 * 294.43084 * 4 2 1 36 36 H 0.96998 * 119.99631 * 25.06773 * 7 5 4 37 37 H 0.97006 * 119.99793 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.49830 * 301.41771 * 16 5 4 39 39 H 1.08999 * 109.52154 * 181.33219 * 16 5 4 40 40 H 1.08997 * 109.58971 * 185.57792 * 17 16 5 41 41 H 1.08996 * 109.70585 * 65.21801 * 17 16 5 42 42 H 1.08001 * 119.12989 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.63538 * 180.02562 * 24 23 22 44 44 H 1.08004 * 121.02409 * 359.95180 * 26 25 24 45 45 H 1.08004 * 120.04162 * 179.97438 * 27 26 25 46 46 H 1.07994 * 119.07233 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0470 -0.7363 1.2453 5 6 3.5712 -0.8499 1.1675 6 1 4.0064 0.1471 1.0988 7 7 4.0727 -1.5195 2.3702 8 6 5.3566 -1.2985 2.7919 9 1 5.9997 -0.6309 2.2376 10 6 5.8319 -1.9334 3.9311 11 7 5.0484 -2.7473 4.6063 12 14 7.5836 -1.6324 4.5060 13 1 7.6064 -0.4788 5.4409 14 1 8.0914 -2.8427 5.2007 15 1 8.4455 -1.3364 3.3335 16 6 3.9615 -1.6629 -0.0689 17 6 3.4656 -0.9421 -1.3264 18 7 2.0225 -0.6996 -1.1945 19 6 1.1673 -1.1062 -2.1536 20 8 -0.0140 -0.8326 -2.0703 21 6 1.6664 -1.8853 -3.3074 22 7 2.7819 -1.5242 -3.9166 23 6 3.2760 -2.1799 -4.9499 24 6 2.6529 -3.2952 -5.4656 25 6 1.4618 -3.7390 -4.8695 26 6 0.7645 -4.8683 -5.3345 27 6 -0.3860 -5.2219 -4.6876 28 6 -0.8330 -4.4696 -3.6023 29 7 -0.1781 -3.4169 -3.1730 30 6 0.9498 -3.0181 -3.7600 31 1 -0.3634 -1.0184 -0.1371 32 1 -0.3633 0.3905 0.9507 33 1 -0.3633 0.6280 -0.8134 34 1 1.6096 -1.7337 1.2889 35 1 1.7689 -0.1776 2.1390 36 1 3.4952 -2.1193 2.8677 37 1 5.3805 -3.1907 5.4026 38 1 3.5060 -2.6516 -0.0129 39 1 5.0460 -1.7637 -0.1112 40 1 3.6530 -1.5638 -2.2019 41 1 3.9874 0.0086 -1.4350 42 1 4.1925 -1.8325 -5.4036 43 1 3.0732 -3.8186 -6.3117 44 1 1.1269 -5.4384 -6.1771 45 1 -0.9486 -6.0831 -5.0167 46 1 -1.7442 -4.7612 -3.1015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044639704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:14 Heat of formation + Delta-G solvation = 71.899382 kcal Electronic energy + Delta-G solvation = -29709.969759 eV Core-core repulsion = 25793.893868 eV Total energy + Delta-G solvation = -3916.075891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66122 -40.04416 -38.29943 -37.24711 -34.43228 -34.17756 -32.53658 -31.91054 -31.76973 -30.59696 -29.15700 -26.99427 -25.68417 -24.48212 -24.30260 -23.67305 -22.76111 -21.64244 -20.25371 -19.48521 -18.71070 -17.83647 -17.38521 -17.04314 -16.41586 -15.86785 -15.55947 -15.09362 -14.80988 -14.67690 -14.54699 -14.34927 -13.82098 -13.68915 -13.55950 -13.39272 -13.13001 -12.97564 -12.91422 -12.53467 -12.52587 -11.95670 -11.86841 -11.50961 -11.30466 -11.07839 -10.87936 -10.79223 -10.64191 -10.43677 -10.20421 -10.10786 -9.89495 -9.74233 -9.67709 -9.60723 -8.96380 -8.86680 -8.69883 -8.27439 -6.93668 -5.74537 -3.03304 -0.31342 0.35116 1.38188 2.48595 2.86251 3.02443 3.44341 3.49372 3.51045 3.71061 3.83870 4.00771 4.14503 4.24918 4.36827 4.44768 4.59984 4.79398 4.87128 5.01311 5.16803 5.24099 5.25507 5.29127 5.41239 5.50927 5.52100 5.60603 5.68118 5.72018 5.77711 5.91843 5.97390 6.08431 6.11184 6.21660 6.26285 6.37371 6.47744 6.54830 6.57616 6.62946 6.84804 7.00000 7.12890 7.34591 7.55048 7.64829 7.71555 8.32476 8.43858 9.54933 10.13252 10.48244 11.48133 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.002959 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.211530 B = 9460.422115 C = 9991.936914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.074 0.926 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.724 5.724 8 C -0.237 4.237 9 H 0.070 0.930 10 C -0.014 4.014 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.152 4.152 17 C 0.104 3.896 18 N -0.585 5.585 19 C 0.576 3.424 20 O -0.507 6.507 21 C 0.153 3.847 22 N -0.439 5.439 23 C 0.074 3.926 24 C -0.129 4.129 25 C -0.082 4.082 26 C -0.062 4.062 27 C -0.156 4.156 28 C 0.134 3.866 29 N -0.434 5.434 30 C 0.105 3.895 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.167 0.833 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -3.219 -23.880 25.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.045 3.955 3 H 0.092 0.908 4 C -0.173 4.173 5 C 0.068 3.932 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.210 4.210 11 N -0.581 5.581 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.193 4.193 17 C -0.019 4.019 18 N -0.318 5.318 19 C 0.361 3.639 20 O -0.382 6.382 21 C 0.000 4.000 22 N -0.152 5.152 23 C -0.071 4.071 24 C -0.149 4.149 25 C -0.089 4.089 26 C -0.088 4.088 27 C -0.177 4.177 28 C -0.040 4.040 29 N -0.142 5.142 30 C -0.020 4.020 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.184 0.816 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.162 0.838 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.649 -1.710 -22.807 24.823 hybrid contribution 0.951 -1.564 -0.614 1.930 sum -8.699 -3.274 -23.420 25.197 Atomic orbital electron populations 1.22194 0.92786 1.03937 1.00451 1.21452 0.95488 0.95083 0.83433 0.90843 1.22372 0.97523 1.00919 0.96472 1.20180 0.90916 0.94999 0.87061 0.93367 1.42438 1.13007 1.53991 1.27000 1.19245 0.89199 1.21818 1.06591 0.91167 1.24741 0.98136 0.99866 0.98272 1.69667 1.35457 1.33360 1.19653 0.86211 0.84576 0.77051 0.78485 1.21744 1.21855 1.20779 1.22694 1.01560 0.99876 0.95142 1.22130 0.78814 1.01210 0.99794 1.48064 1.07868 1.56169 1.19649 1.17546 0.85664 0.79234 0.81494 1.90856 1.15738 1.55463 1.76118 1.21594 0.90059 0.92376 0.96013 1.67594 1.09651 1.30188 1.07742 1.22672 0.99841 0.92314 0.92296 1.22350 0.94360 0.97695 1.00517 1.18944 0.96659 0.96831 0.96490 1.21428 0.94191 0.94313 0.98917 1.22109 0.97256 1.01308 0.96998 1.23262 0.98512 0.89380 0.92810 1.68103 1.05104 1.13135 1.27881 1.19408 0.93448 0.95678 0.93459 0.91161 0.93658 0.91155 0.91791 0.90539 0.78301 0.93558 0.92627 0.90771 0.89045 0.91245 0.81554 0.83634 0.83686 0.83833 0.81692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.62 37.16 0.28 -1.82 16 2 C 0.15 2.34 3.51 -67.37 -0.24 2.11 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.13 -2.37 4.86 -26.38 -0.13 -2.50 16 5 C 0.18 3.59 2.73 -67.89 -0.19 3.41 16 6 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 7 N -0.72 -18.29 5.12 -53.39 -0.27 -18.56 16 8 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 9 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 10 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 11 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 12 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 16 C -0.15 -2.78 5.66 -26.61 -0.15 -2.93 16 17 C 0.10 1.60 6.05 -3.71 -0.02 1.58 16 18 N -0.58 -9.43 2.97 -166.05 -0.49 -9.92 16 19 C 0.58 9.67 7.05 -12.31 -0.09 9.58 16 20 O -0.51 -9.30 11.87 5.32 0.06 -9.24 16 21 C 0.15 2.29 5.94 -82.55 -0.49 1.80 16 22 N -0.44 -5.70 7.47 -9.55 -0.07 -5.77 16 23 C 0.07 0.70 11.12 -17.66 -0.20 0.50 16 24 C -0.13 -1.05 9.93 -38.94 -0.39 -1.43 16 25 C -0.08 -0.85 5.75 -106.79 -0.61 -1.46 16 26 C -0.06 -0.45 9.94 -39.25 -0.39 -0.84 16 27 C -0.16 -1.07 10.03 -39.72 -0.40 -1.47 16 28 C 0.13 1.30 11.14 -17.38 -0.19 1.10 16 29 N -0.43 -6.11 9.30 -10.75 -0.10 -6.21 16 30 C 0.10 1.45 6.59 -84.62 -0.56 0.89 16 31 H 0.07 1.21 6.73 -51.93 -0.35 0.86 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.12 6.75 -51.93 -0.35 0.77 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.38 10.40 7.80 -40.82 -0.32 10.08 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.09 1.35 4.73 -51.93 -0.25 1.11 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 45 H 0.14 0.49 8.06 -52.48 -0.42 0.06 16 46 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -34.71 371.52 -9.88 -44.59 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.30 Total: 8.47 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -4.00 Total: 1.28 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -0.21 Total: -68.10 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.06 Total: -9.24 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.71 -9.88 -44.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044639704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.489 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds