Wall clock time and date at job start Sat Apr 11 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.70296 * 2 1 4 4 C 1.53630 * 109.66516 * 120.59341 * 2 1 3 5 5 C 1.53044 * 109.23983 * 174.54497 * 4 2 1 6 6 H 1.08999 * 109.44514 * 58.52522 * 5 4 2 7 7 N 1.46499 * 109.45677 * 178.49025 * 5 4 2 8 8 C 1.36938 * 120.00027 * 205.07234 * 7 5 4 9 9 H 1.08002 * 119.99399 * 359.97438 * 8 7 5 10 10 C 1.38808 * 119.99886 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00218 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99745 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46545 * 90.00076 * 12 10 8 14 14 H 1.48498 * 109.47073 * 210.00053 * 12 10 8 15 15 H 1.48500 * 109.47277 * 330.00552 * 12 10 8 16 16 C 1.53038 * 109.53854 * 298.50968 * 5 4 2 17 17 C 1.53190 * 109.31265 * 61.36776 * 16 5 4 18 18 N 1.46930 * 108.77783 * 305.36188 * 17 16 5 19 19 C 1.34770 * 120.63309 * 233.58997 * 18 17 16 20 20 O 1.21547 * 119.99897 * 184.22401 * 19 18 17 21 21 C 1.47895 * 120.00027 * 4.21599 * 19 18 17 22 22 N 1.32130 * 120.03847 * 316.11721 * 21 19 18 23 23 C 1.31981 * 122.76977 * 179.97438 * 22 21 19 24 24 C 1.37771 * 121.72988 * 0.02562 * 23 22 21 25 25 C 1.40391 * 118.73122 * 359.97438 * 24 23 22 26 26 C 1.40638 * 122.28719 * 180.02562 * 25 24 23 27 27 C 1.36639 * 117.95372 * 179.97438 * 26 25 24 28 28 C 1.39406 * 119.92581 * 359.97438 * 27 26 25 29 29 N 1.31208 * 121.84974 * 0.02562 * 28 27 26 30 30 C 1.33257 * 121.22324 * 0.02562 * 29 28 27 31 31 H 1.09000 * 109.47515 * 172.33172 * 1 2 3 32 32 H 1.09007 * 109.46546 * 292.33052 * 1 2 3 33 33 H 1.08999 * 109.47023 * 52.33062 * 1 2 3 34 34 H 1.08998 * 109.62938 * 54.55579 * 4 2 1 35 35 H 1.09002 * 109.45378 * 294.43084 * 4 2 1 36 36 H 0.96998 * 119.99631 * 25.06773 * 7 5 4 37 37 H 0.97006 * 119.99793 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.49830 * 301.41771 * 16 5 4 39 39 H 1.08999 * 109.52154 * 181.33219 * 16 5 4 40 40 H 1.08997 * 109.58971 * 185.57792 * 17 16 5 41 41 H 1.08996 * 109.70585 * 65.21801 * 17 16 5 42 42 H 1.08001 * 119.12989 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.63538 * 180.02562 * 24 23 22 44 44 H 1.08004 * 121.02409 * 359.95180 * 26 25 24 45 45 H 1.08004 * 120.04162 * 179.97438 * 27 26 25 46 46 H 1.07994 * 119.07233 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0470 -0.7363 1.2453 5 6 3.5712 -0.8499 1.1675 6 1 4.0064 0.1471 1.0988 7 7 4.0727 -1.5195 2.3702 8 6 5.3566 -1.2985 2.7919 9 1 5.9997 -0.6309 2.2376 10 6 5.8319 -1.9334 3.9311 11 7 5.0484 -2.7473 4.6063 12 14 7.5836 -1.6324 4.5060 13 1 7.6064 -0.4788 5.4409 14 1 8.0914 -2.8427 5.2007 15 1 8.4455 -1.3364 3.3335 16 6 3.9615 -1.6629 -0.0689 17 6 3.4656 -0.9421 -1.3264 18 7 2.0225 -0.6996 -1.1945 19 6 1.1673 -1.1062 -2.1536 20 8 -0.0140 -0.8326 -2.0703 21 6 1.6664 -1.8853 -3.3074 22 7 2.7819 -1.5242 -3.9166 23 6 3.2760 -2.1799 -4.9499 24 6 2.6529 -3.2952 -5.4656 25 6 1.4618 -3.7390 -4.8695 26 6 0.7645 -4.8683 -5.3345 27 6 -0.3860 -5.2219 -4.6876 28 6 -0.8330 -4.4696 -3.6023 29 7 -0.1781 -3.4169 -3.1730 30 6 0.9498 -3.0181 -3.7600 31 1 -0.3634 -1.0184 -0.1371 32 1 -0.3633 0.3905 0.9507 33 1 -0.3633 0.6280 -0.8134 34 1 1.6096 -1.7337 1.2889 35 1 1.7689 -0.1776 2.1390 36 1 3.4952 -2.1193 2.8677 37 1 5.3805 -3.1907 5.4026 38 1 3.5060 -2.6516 -0.0129 39 1 5.0460 -1.7637 -0.1112 40 1 3.6530 -1.5638 -2.2019 41 1 3.9874 0.0086 -1.4350 42 1 4.1925 -1.8325 -5.4036 43 1 3.0732 -3.8186 -6.3117 44 1 1.1269 -5.4384 -6.1771 45 1 -0.9486 -6.0831 -5.0167 46 1 -1.7442 -4.7612 -3.1015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044639704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:13 Heat of formation + Delta-G solvation = 48.864789 kcal Electronic energy + Delta-G solvation = -29710.968614 eV Core-core repulsion = 25793.893868 eV Total energy + Delta-G solvation = -3917.074746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.48877 -41.21082 -39.08778 -38.68795 -36.18138 -34.98579 -33.84270 -33.61250 -32.53776 -31.51709 -30.86812 -28.44967 -26.56805 -25.98203 -25.19522 -24.75822 -24.28604 -22.82838 -21.67211 -20.68579 -19.60488 -19.11677 -18.58533 -18.27546 -17.38458 -17.06749 -16.72037 -16.62094 -15.80888 -15.72650 -15.54763 -15.45219 -15.33647 -15.21799 -14.75266 -14.59850 -14.26788 -14.04955 -13.94099 -13.85318 -13.40280 -13.33722 -13.10423 -13.05334 -12.85794 -12.64673 -12.61744 -12.17718 -12.05293 -11.97614 -11.83261 -11.71277 -11.42018 -11.03698 -10.84085 -10.66696 -10.35116 -10.06532 -9.63656 -9.43975 -9.01520 -7.92955 -5.22348 -1.05342 -0.35051 0.66594 1.47855 1.49792 1.56641 1.58049 1.79740 2.04311 2.56712 2.91019 3.02407 3.18597 3.39730 3.42388 3.62832 3.70882 3.71192 3.80253 3.92568 4.02413 4.07290 4.18677 4.23933 4.27405 4.31153 4.46285 4.53428 4.58841 4.61516 4.63586 4.70275 4.82602 4.87013 4.94242 4.98556 5.03061 5.10150 5.13275 5.23283 5.34481 5.39004 5.46338 5.52720 5.60654 5.69316 6.27966 6.34123 6.57323 6.86463 7.11193 7.33990 8.08373 8.33054 9.30764 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.002959 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.211530 B = 9460.422115 C = 9991.936914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.151 3.849 3 H 0.090 0.910 4 C -0.121 4.121 5 C 0.175 3.825 6 H 0.052 0.948 7 N -0.737 5.737 8 C -0.236 4.236 9 H 0.079 0.921 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.973 3.027 13 H -0.288 1.288 14 H -0.298 1.298 15 H -0.267 1.267 16 C -0.138 4.138 17 C 0.116 3.884 18 N -0.590 5.590 19 C 0.572 3.428 20 O -0.535 6.535 21 C 0.104 3.896 22 N -0.450 5.450 23 C 0.054 3.946 24 C -0.096 4.096 25 C -0.103 4.103 26 C -0.050 4.050 27 C -0.153 4.153 28 C 0.130 3.870 29 N -0.497 5.497 30 C 0.080 3.920 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.370 0.630 37 H 0.250 0.750 38 H 0.034 0.966 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.201 0.799 43 H 0.195 0.805 44 H 0.191 0.809 45 H 0.186 0.814 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.382 -4.087 -27.330 28.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.048 3.952 3 H 0.108 0.892 4 C -0.160 4.160 5 C 0.067 3.933 6 H 0.070 0.930 7 N -0.376 5.376 8 C -0.368 4.368 9 H 0.097 0.903 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.802 3.198 13 H -0.215 1.215 14 H -0.225 1.225 15 H -0.191 1.191 16 C -0.179 4.179 17 C -0.007 4.007 18 N -0.323 5.323 19 C 0.359 3.641 20 O -0.411 6.411 21 C -0.047 4.047 22 N -0.163 5.163 23 C -0.093 4.093 24 C -0.116 4.116 25 C -0.111 4.111 26 C -0.076 4.076 27 C -0.174 4.174 28 C -0.043 4.043 29 N -0.207 5.207 30 C -0.044 4.044 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.201 0.799 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.120 0.880 41 H 0.103 0.897 42 H 0.218 0.782 43 H 0.212 0.788 44 H 0.208 0.792 45 H 0.203 0.797 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.529 -2.544 -26.300 27.765 hybrid contribution 0.512 -1.405 0.283 1.522 sum -8.017 -3.949 -26.017 27.509 Atomic orbital electron populations 1.22009 0.92458 1.02450 1.00998 1.21439 0.95665 0.95507 0.82608 0.89181 1.22214 0.95790 1.00291 0.97708 1.20385 0.92238 0.94771 0.85914 0.92955 1.42650 1.12359 1.54150 1.28449 1.19647 0.90085 1.20850 1.06213 0.90289 1.25575 1.02199 1.00349 0.98884 1.69837 1.37341 1.34977 1.20178 0.85142 0.80039 0.76434 0.78180 1.21489 1.22476 1.19145 1.22468 1.00808 0.98812 0.95800 1.22039 0.78568 1.01690 0.98366 1.48118 1.08061 1.56406 1.19692 1.17958 0.85365 0.78735 0.82084 1.90809 1.16793 1.56378 1.77155 1.21227 0.92271 0.94221 0.97009 1.67445 1.09047 1.30975 1.08807 1.23318 1.01121 0.92986 0.91868 1.22916 0.92411 0.96202 1.00090 1.19350 0.97924 0.97852 0.95939 1.21995 0.93374 0.92890 0.99306 1.22511 0.97498 1.01805 0.95585 1.23828 0.98575 0.88417 0.93493 1.68037 1.06629 1.15732 1.30269 1.19587 0.93768 0.96093 0.94927 0.93457 0.92103 0.91642 0.93521 0.90495 0.79891 0.94158 0.94700 0.91560 0.87985 0.89738 0.78193 0.78783 0.79150 0.79693 0.80007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 7.62 71.98 0.55 -3.36 16 2 C 0.15 4.87 3.51 45.12 0.16 5.03 16 3 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 4 C -0.12 -4.43 4.86 30.82 0.15 -4.28 16 5 C 0.18 7.19 2.73 45.02 0.12 7.31 16 6 H 0.05 2.12 8.08 -2.39 -0.02 2.10 16 7 N -0.74 -38.21 5.12 -322.81 -1.65 -39.87 16 8 C -0.24 -13.19 9.93 84.03 0.83 -12.36 16 9 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 10 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 11 N -0.97 -60.63 13.06 21.65 0.28 -60.34 16 12 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 13 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 14 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 16 C -0.14 -5.17 5.66 30.67 0.17 -4.99 16 17 C 0.12 3.61 6.05 86.36 0.52 4.13 16 18 N -0.59 -19.63 2.97 -797.54 -2.37 -21.99 16 19 C 0.57 20.20 7.05 86.80 0.61 20.81 16 20 O -0.53 -20.92 11.87 -3.86 -0.05 -20.97 16 21 C 0.10 3.20 5.94 42.46 0.25 3.45 16 22 N -0.45 -11.44 7.47 -184.14 -1.38 -12.82 16 23 C 0.05 0.87 11.12 84.56 0.94 1.82 16 24 C -0.10 -1.19 9.93 22.68 0.23 -0.97 16 25 C -0.10 -1.88 5.75 -21.27 -0.12 -2.01 16 26 C -0.05 -0.52 9.94 22.48 0.22 -0.30 16 27 C -0.15 -1.63 10.03 22.18 0.22 -1.41 16 28 C 0.13 2.44 11.14 85.07 0.95 3.39 16 29 N -0.50 -14.56 9.30 -187.91 -1.75 -16.31 16 30 C 0.08 2.24 6.59 40.63 0.27 2.51 16 31 H 0.05 1.73 6.73 -2.39 -0.02 1.71 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 2.17 6.75 -2.39 -0.02 2.15 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.37 20.91 7.80 -92.71 -0.72 20.19 16 37 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 38 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.10 3.03 4.73 -2.39 -0.01 3.02 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.20 1.69 8.06 -2.91 -0.02 1.66 16 43 H 0.20 0.43 8.06 -2.91 -0.02 0.41 16 44 H 0.19 0.20 8.06 -2.91 -0.02 0.17 16 45 H 0.19 0.36 8.06 -2.91 -0.02 0.33 16 46 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -80.97 371.52 1.96 -79.01 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.29 Total: 30.13 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.55 Total: 14.70 kcal Atomic # 7 Polarization: -144.47 SS G_CDS: -6.86 Total: -151.33 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -80.97 1.96 -79.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044639704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.876 kcal (2) G-P(sol) polarization free energy of solvation -80.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds