Wall clock time and date at job start Sat Apr 11 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.59149 * 2 1 4 4 C 1.53193 * 109.58704 * 239.56430 * 2 1 3 5 5 C 1.53035 * 109.31640 * 294.85341 * 4 2 1 6 6 H 1.09004 * 109.45915 * 58.65349 * 5 4 2 7 7 N 1.46501 * 109.46140 * 178.61062 * 5 4 2 8 8 C 1.36930 * 120.00162 * 204.99820 * 7 5 4 9 9 H 1.08002 * 120.00303 * 0.02562 * 8 7 5 10 10 C 1.38815 * 120.00160 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99451 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00127 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47402 * 59.99419 * 12 10 8 14 14 H 1.48500 * 109.47216 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46876 * 299.99314 * 12 10 8 16 16 C 1.53038 * 109.53549 * 298.63226 * 5 4 2 17 17 C 1.53189 * 109.31414 * 61.36951 * 16 5 4 18 18 N 1.46929 * 108.77385 * 305.36106 * 17 16 5 19 19 C 1.34780 * 120.63319 * 233.88649 * 18 17 16 20 20 O 1.21542 * 119.99796 * 171.95244 * 19 18 17 21 21 C 1.47896 * 119.99555 * 351.94702 * 19 18 17 22 22 N 1.32130 * 120.03551 * 352.81977 * 21 19 18 23 23 C 1.31982 * 122.77081 * 179.97438 * 22 21 19 24 24 C 1.37784 * 121.72525 * 359.96840 * 23 22 21 25 25 C 1.40382 * 118.72640 * 0.02648 * 24 23 22 26 26 C 1.40643 * 122.27276 * 180.02562 * 25 24 23 27 27 C 1.36654 * 117.95093 * 179.29060 * 26 25 24 28 28 C 1.39390 * 119.91705 * 0.63737 * 27 26 25 29 29 N 1.31201 * 121.86296 * 359.57218 * 28 27 26 30 30 C 1.33261 * 121.22282 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.47431 * 299.72371 * 1 2 3 32 32 H 1.09004 * 109.46658 * 59.72030 * 1 2 3 33 33 H 1.09000 * 109.47376 * 179.71651 * 1 2 3 34 34 H 1.09006 * 109.49379 * 54.80771 * 4 2 1 35 35 H 1.09000 * 109.49472 * 174.86267 * 4 2 1 36 36 H 0.97003 * 119.99610 * 25.00326 * 7 5 4 37 37 H 0.97013 * 119.99310 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.49470 * 181.31720 * 16 5 4 39 39 H 1.09003 * 109.50080 * 301.41184 * 16 5 4 40 40 H 1.08998 * 109.58922 * 185.58120 * 17 16 5 41 41 H 1.09001 * 109.59236 * 65.14564 * 17 16 5 42 42 H 1.08001 * 119.13630 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.63350 * 180.02562 * 24 23 22 44 44 H 1.08001 * 121.02446 * 359.97438 * 26 25 24 45 45 H 1.07997 * 120.03964 * 180.18956 * 27 26 25 46 46 H 1.08006 * 119.07013 * 179.55473 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7311 -1.2444 5 6 1.6414 -2.2057 -1.1672 6 1 0.5564 -2.2829 -1.0963 7 7 2.1022 -2.9010 -2.3715 8 6 1.4649 -4.0376 -2.7921 9 1 0.6222 -4.4214 -2.2362 10 6 1.9019 -4.6967 -3.9329 11 7 2.9286 -4.2288 -4.6107 12 14 1.0320 -6.2469 -4.5070 13 1 -0.3918 -5.9381 -4.7943 14 1 1.6872 -6.7548 -5.7391 15 1 1.1095 -7.2806 -3.4437 16 6 2.2799 -2.8463 0.0673 17 6 1.7690 -2.1393 1.3266 18 7 2.0224 -0.6980 1.1955 19 6 2.6987 -0.0300 2.1509 20 8 3.0296 1.1249 1.9664 21 6 3.0381 -0.7022 3.4238 22 7 2.5591 -1.9058 3.6843 23 6 2.8272 -2.5549 4.8017 24 6 3.6336 -2.0131 5.7787 25 6 4.1794 -0.7364 5.5718 26 6 5.0120 -0.1131 6.5185 27 6 5.5069 1.1251 6.2196 28 6 5.1704 1.7355 5.0125 29 7 4.3895 1.1511 4.1349 30 6 3.8810 -0.0598 4.3610 31 1 -0.3634 0.5095 0.8924 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3634 -1.0276 -0.0051 34 1 1.6075 -0.2813 -2.1365 35 1 3.1297 -0.6516 -1.2907 36 1 2.8589 -2.5562 -2.8710 37 1 3.2337 -4.6892 -5.4082 38 1 2.0121 -3.9021 0.1088 39 1 3.3639 -2.7475 0.0089 40 1 2.2943 -2.5246 2.2005 41 1 0.6985 -2.3137 1.4347 42 1 2.4036 -3.5366 4.9541 43 1 3.8418 -2.5602 6.6863 44 1 5.2617 -0.6028 7.4482 45 1 6.1521 1.6332 6.9210 46 1 5.5635 2.7173 4.7934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044639706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:17 Heat of formation + Delta-G solvation = 73.845095 kcal Electronic energy + Delta-G solvation = -29540.170994 eV Core-core repulsion = 25624.179475 eV Total energy + Delta-G solvation = -3915.991519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68337 -39.89054 -38.31670 -37.38671 -34.43013 -34.11264 -32.49937 -31.71825 -31.65540 -30.59859 -29.16047 -27.17111 -25.83043 -24.50214 -24.24264 -23.64352 -22.72945 -21.60373 -20.56254 -19.26396 -18.38926 -17.84935 -17.34558 -16.89931 -16.55128 -15.78083 -15.56341 -15.11262 -14.89839 -14.66073 -14.52049 -14.06980 -13.95062 -13.54455 -13.46466 -13.39423 -13.33767 -12.94789 -12.89475 -12.66451 -12.40645 -12.31739 -11.70287 -11.51950 -11.15288 -11.12735 -10.84523 -10.75758 -10.69232 -10.41988 -10.17733 -10.14822 -9.81972 -9.69809 -9.59452 -9.49252 -9.08592 -8.80938 -8.68122 -8.24366 -6.88561 -5.71297 -2.99530 -0.38799 0.31827 1.32699 2.43174 3.01325 3.09259 3.46470 3.50758 3.51925 3.80289 3.82844 3.93685 4.06666 4.22945 4.35253 4.42802 4.63021 4.76555 4.87219 4.98377 5.13691 5.21074 5.27747 5.37011 5.47134 5.51566 5.54754 5.66415 5.68974 5.76659 5.83048 5.89757 5.93193 6.07432 6.11514 6.19534 6.26173 6.42568 6.51788 6.60813 6.66380 6.68351 6.85013 7.08899 7.21034 7.29084 7.56999 7.72478 7.73817 8.36937 8.47404 9.58081 10.17562 10.52338 11.51459 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.002712 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.697960 B =10320.163203 C =10954.111844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.095 0.905 4 C -0.132 4.132 5 C 0.178 3.822 6 H 0.050 0.950 7 N -0.725 5.725 8 C -0.235 4.235 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.287 1.287 16 C -0.150 4.150 17 C 0.070 3.930 18 N -0.580 5.580 19 C 0.562 3.438 20 O -0.506 6.506 21 C 0.150 3.850 22 N -0.429 5.429 23 C 0.070 3.930 24 C -0.124 4.124 25 C -0.083 4.083 26 C -0.065 4.065 27 C -0.155 4.155 28 C 0.130 3.870 29 N -0.420 5.420 30 C 0.106 3.894 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.139 0.861 41 H 0.060 0.940 42 H 0.169 0.831 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.143 0.857 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 9.008 26.766 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.113 0.887 4 C -0.171 4.171 5 C 0.068 3.932 6 H 0.068 0.932 7 N -0.365 5.365 8 C -0.366 4.366 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.218 1.218 15 H -0.214 1.214 16 C -0.191 4.191 17 C -0.052 4.052 18 N -0.312 5.312 19 C 0.347 3.653 20 O -0.379 6.379 21 C -0.002 4.002 22 N -0.142 5.142 23 C -0.075 4.075 24 C -0.145 4.145 25 C -0.090 4.090 26 C -0.091 4.091 27 C -0.176 4.176 28 C -0.044 4.044 29 N -0.127 5.127 30 C -0.019 4.019 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.216 0.784 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.155 0.845 41 H 0.079 0.921 42 H 0.186 0.814 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.161 0.839 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.835 9.335 25.196 26.932 hybrid contribution 0.616 -1.097 0.916 1.556 sum 2.451 8.238 26.112 27.490 Atomic orbital electron populations 1.22134 0.95001 1.02850 1.01712 1.21235 0.93939 0.97114 0.83987 0.88703 1.22190 1.01307 0.97293 0.96286 1.20239 0.96730 0.89116 0.87147 0.93215 1.42447 1.37943 1.29205 1.26946 1.19191 1.10043 1.01012 1.06400 0.91283 1.24738 0.98591 0.99488 0.98299 1.69663 1.27678 1.41362 1.19546 0.86290 0.78817 0.83354 0.77863 1.21326 1.21786 1.21354 1.22662 1.00783 1.00372 0.95279 1.23079 1.01827 0.78403 1.01937 1.48111 1.53390 1.10292 1.19443 1.17587 0.79359 0.85991 0.82412 1.90826 1.51951 1.16370 1.78779 1.21667 0.93586 0.90088 0.94868 1.67572 1.21059 1.06543 1.19009 1.22834 0.95700 1.00369 0.88631 1.22360 0.97020 0.94207 1.00926 1.18986 0.98822 0.95906 0.95306 1.21425 0.94322 0.94942 0.98373 1.22136 1.00587 0.96139 0.98778 1.23341 0.92155 0.99810 0.89072 1.68306 1.06733 1.07381 1.30286 1.19436 0.97389 0.92295 0.92757 0.93017 0.91360 0.91558 0.90680 0.91925 0.78377 0.93547 0.90984 0.92793 0.84456 0.92129 0.81396 0.83616 0.83716 0.83903 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.03 37.16 0.34 -1.89 16 2 C 0.14 2.25 3.22 -67.60 -0.22 2.03 16 3 H 0.09 1.57 7.00 -51.93 -0.36 1.20 16 4 C -0.13 -2.37 5.02 -26.61 -0.13 -2.51 16 5 C 0.18 3.60 2.52 -67.89 -0.17 3.43 16 6 H 0.05 1.02 6.43 -51.93 -0.33 0.68 16 7 N -0.73 -18.47 5.12 -53.39 -0.27 -18.75 16 8 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 9 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 11 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 12 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 C -0.15 -2.78 5.66 -26.61 -0.15 -2.93 16 17 C 0.07 1.09 5.51 -3.71 -0.02 1.07 16 18 N -0.58 -9.42 2.68 -166.30 -0.45 -9.86 16 19 C 0.56 9.57 7.65 -12.30 -0.09 9.48 16 20 O -0.51 -9.74 14.68 5.33 0.08 -9.67 16 21 C 0.15 2.21 6.67 -82.55 -0.55 1.65 16 22 N -0.43 -5.37 6.02 -9.55 -0.06 -5.43 16 23 C 0.07 0.62 11.12 -17.65 -0.20 0.43 16 24 C -0.12 -0.94 9.93 -38.94 -0.39 -1.33 16 25 C -0.08 -0.81 5.75 -106.79 -0.61 -1.42 16 26 C -0.06 -0.43 9.94 -39.25 -0.39 -0.82 16 27 C -0.16 -0.99 10.03 -39.72 -0.40 -1.39 16 28 C 0.13 1.20 11.14 -17.39 -0.19 1.01 16 29 N -0.42 -5.82 8.52 -10.75 -0.09 -5.91 16 30 C 0.11 1.43 6.61 -84.62 -0.56 0.87 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.96 5.72 -51.93 -0.30 0.66 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.38 10.49 7.80 -40.82 -0.32 10.17 16 37 H 0.25 7.58 8.31 -40.81 -0.34 7.24 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.14 2.01 3.96 -87.08 -0.34 1.67 16 41 H 0.06 0.89 7.50 -51.93 -0.39 0.50 16 42 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 45 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 46 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -35.43 369.88 -9.75 -45.18 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.24 Total: 8.79 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -3.99 Total: 0.42 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -0.14 Total: -67.84 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.43 -9.75 -45.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044639706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.021 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds