Wall clock time and date at job start Sat Apr 11 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.59149 * 2 1 4 4 C 1.53193 * 109.58704 * 239.56430 * 2 1 3 5 5 C 1.53035 * 109.31640 * 294.85341 * 4 2 1 6 6 H 1.09004 * 109.45915 * 58.65349 * 5 4 2 7 7 N 1.46501 * 109.46140 * 178.61062 * 5 4 2 8 8 C 1.36930 * 120.00162 * 204.99820 * 7 5 4 9 9 H 1.08002 * 120.00303 * 0.02562 * 8 7 5 10 10 C 1.38815 * 120.00160 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99451 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00127 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47402 * 59.99419 * 12 10 8 14 14 H 1.48500 * 109.47216 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46876 * 299.99314 * 12 10 8 16 16 C 1.53038 * 109.53549 * 298.63226 * 5 4 2 17 17 C 1.53189 * 109.31414 * 61.36951 * 16 5 4 18 18 N 1.46929 * 108.77385 * 305.36106 * 17 16 5 19 19 C 1.34780 * 120.63319 * 233.88649 * 18 17 16 20 20 O 1.21542 * 119.99796 * 171.95244 * 19 18 17 21 21 C 1.47896 * 119.99555 * 351.94702 * 19 18 17 22 22 N 1.32130 * 120.03551 * 352.81977 * 21 19 18 23 23 C 1.31982 * 122.77081 * 179.97438 * 22 21 19 24 24 C 1.37784 * 121.72525 * 359.96840 * 23 22 21 25 25 C 1.40382 * 118.72640 * 0.02648 * 24 23 22 26 26 C 1.40643 * 122.27276 * 180.02562 * 25 24 23 27 27 C 1.36654 * 117.95093 * 179.29060 * 26 25 24 28 28 C 1.39390 * 119.91705 * 0.63737 * 27 26 25 29 29 N 1.31201 * 121.86296 * 359.57218 * 28 27 26 30 30 C 1.33261 * 121.22282 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.47431 * 299.72371 * 1 2 3 32 32 H 1.09004 * 109.46658 * 59.72030 * 1 2 3 33 33 H 1.09000 * 109.47376 * 179.71651 * 1 2 3 34 34 H 1.09006 * 109.49379 * 54.80771 * 4 2 1 35 35 H 1.09000 * 109.49472 * 174.86267 * 4 2 1 36 36 H 0.97003 * 119.99610 * 25.00326 * 7 5 4 37 37 H 0.97013 * 119.99310 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.49470 * 181.31720 * 16 5 4 39 39 H 1.09003 * 109.50080 * 301.41184 * 16 5 4 40 40 H 1.08998 * 109.58922 * 185.58120 * 17 16 5 41 41 H 1.09001 * 109.59236 * 65.14564 * 17 16 5 42 42 H 1.08001 * 119.13630 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.63350 * 180.02562 * 24 23 22 44 44 H 1.08001 * 121.02446 * 359.97438 * 26 25 24 45 45 H 1.07997 * 120.03964 * 180.18956 * 27 26 25 46 46 H 1.08006 * 119.07013 * 179.55473 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7311 -1.2444 5 6 1.6414 -2.2057 -1.1672 6 1 0.5564 -2.2829 -1.0963 7 7 2.1022 -2.9010 -2.3715 8 6 1.4649 -4.0376 -2.7921 9 1 0.6222 -4.4214 -2.2362 10 6 1.9019 -4.6967 -3.9329 11 7 2.9286 -4.2288 -4.6107 12 14 1.0320 -6.2469 -4.5070 13 1 -0.3918 -5.9381 -4.7943 14 1 1.6872 -6.7548 -5.7391 15 1 1.1095 -7.2806 -3.4437 16 6 2.2799 -2.8463 0.0673 17 6 1.7690 -2.1393 1.3266 18 7 2.0224 -0.6980 1.1955 19 6 2.6987 -0.0300 2.1509 20 8 3.0296 1.1249 1.9664 21 6 3.0381 -0.7022 3.4238 22 7 2.5591 -1.9058 3.6843 23 6 2.8272 -2.5549 4.8017 24 6 3.6336 -2.0131 5.7787 25 6 4.1794 -0.7364 5.5718 26 6 5.0120 -0.1131 6.5185 27 6 5.5069 1.1251 6.2196 28 6 5.1704 1.7355 5.0125 29 7 4.3895 1.1511 4.1349 30 6 3.8810 -0.0598 4.3610 31 1 -0.3634 0.5095 0.8924 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3634 -1.0276 -0.0051 34 1 1.6075 -0.2813 -2.1365 35 1 3.1297 -0.6516 -1.2907 36 1 2.8589 -2.5562 -2.8710 37 1 3.2337 -4.6892 -5.4082 38 1 2.0121 -3.9021 0.1088 39 1 3.3639 -2.7475 0.0089 40 1 2.2943 -2.5246 2.2005 41 1 0.6985 -2.3137 1.4347 42 1 2.4036 -3.5366 4.9541 43 1 3.8418 -2.5602 6.6863 44 1 5.2617 -0.6028 7.4482 45 1 6.1521 1.6332 6.9210 46 1 5.5635 2.7173 4.7934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044639706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:16 Heat of formation + Delta-G solvation = 50.262239 kcal Electronic energy + Delta-G solvation = -29541.193623 eV Core-core repulsion = 25624.179475 eV Total energy + Delta-G solvation = -3917.014148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.47663 -41.07719 -39.11322 -38.79126 -36.21309 -34.88282 -33.85773 -33.33912 -32.46163 -31.48348 -30.86988 -28.62284 -26.69227 -25.88806 -25.20203 -24.71635 -24.23627 -22.92181 -21.83472 -20.17427 -19.68544 -18.97024 -18.56874 -18.18293 -17.56571 -16.88737 -16.70642 -16.55958 -15.90452 -15.70743 -15.50669 -15.37225 -15.26283 -15.09905 -14.83345 -14.42871 -14.35724 -14.04369 -13.95040 -13.91027 -13.64465 -13.32812 -13.05359 -12.90358 -12.79978 -12.63092 -12.42762 -12.20993 -12.08882 -11.98448 -11.81286 -11.71529 -11.30105 -11.10939 -10.96652 -10.51517 -10.35393 -9.92370 -9.67759 -9.41143 -8.96797 -7.91548 -5.20559 -1.11890 -0.34645 0.64153 1.47780 1.51348 1.57196 1.62484 1.87125 2.14197 2.57891 2.95217 3.03826 3.19545 3.36922 3.41534 3.63328 3.70923 3.76459 3.83833 3.94782 4.07410 4.15565 4.21225 4.26937 4.28726 4.42598 4.48306 4.53000 4.57632 4.63099 4.64245 4.70059 4.88778 4.95781 4.98888 5.03324 5.08100 5.11621 5.15988 5.25148 5.31201 5.44590 5.52697 5.56783 5.63112 5.81253 6.29492 6.38311 6.56253 6.91446 7.15214 7.34993 8.10465 8.35051 9.32209 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.002712 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.697960 B =10320.163203 C =10954.111844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.121 4.121 5 C 0.176 3.824 6 H 0.055 0.945 7 N -0.739 5.739 8 C -0.234 4.234 9 H 0.079 0.921 10 C -0.080 4.080 11 N -0.974 5.974 12 Si 0.974 3.026 13 H -0.277 1.277 14 H -0.299 1.299 15 H -0.276 1.276 16 C -0.138 4.138 17 C 0.082 3.918 18 N -0.584 5.584 19 C 0.557 3.443 20 O -0.542 6.542 21 C 0.100 3.900 22 N -0.438 5.438 23 C 0.049 3.951 24 C -0.087 4.087 25 C -0.103 4.103 26 C -0.050 4.050 27 C -0.153 4.153 28 C 0.128 3.872 29 N -0.487 5.487 30 C 0.084 3.916 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.368 0.632 37 H 0.249 0.751 38 H 0.064 0.936 39 H 0.032 0.968 40 H 0.154 0.846 41 H 0.073 0.927 42 H 0.203 0.797 43 H 0.197 0.803 44 H 0.192 0.808 45 H 0.186 0.814 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 7.779 31.136 32.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.160 4.160 5 C 0.068 3.932 6 H 0.073 0.927 7 N -0.377 5.377 8 C -0.366 4.366 9 H 0.097 0.903 10 C -0.272 4.272 11 N -0.625 5.625 12 Si 0.803 3.197 13 H -0.203 1.203 14 H -0.225 1.225 15 H -0.202 1.202 16 C -0.179 4.179 17 C -0.040 4.040 18 N -0.316 5.316 19 C 0.344 3.656 20 O -0.418 6.418 21 C -0.050 4.050 22 N -0.151 5.151 23 C -0.097 4.097 24 C -0.107 4.107 25 C -0.110 4.110 26 C -0.076 4.076 27 C -0.173 4.173 28 C -0.045 4.045 29 N -0.196 5.196 30 C -0.040 4.040 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.200 0.800 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.170 0.830 41 H 0.091 0.909 42 H 0.220 0.780 43 H 0.214 0.786 44 H 0.209 0.791 45 H 0.203 0.797 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.561 8.123 29.607 30.741 hybrid contribution 0.801 -0.638 -0.206 1.044 sum 2.362 7.485 29.401 30.431 Atomic orbital electron populations 1.22059 0.93014 1.02950 1.02758 1.21159 0.95391 0.96306 0.83177 0.89534 1.22051 1.00080 0.96258 0.97613 1.20430 0.96880 0.89926 0.85978 0.92729 1.42675 1.37484 1.29180 1.28398 1.19602 1.09733 1.01218 1.06033 0.90326 1.25591 0.99738 1.02981 0.98903 1.69843 1.29644 1.42969 1.20050 0.85202 0.77832 0.79638 0.77057 1.20285 1.22509 1.20232 1.22476 0.99267 1.00125 0.96059 1.23082 1.02576 0.77785 1.00596 1.48172 1.53581 1.10464 1.19428 1.18098 0.78345 0.85801 0.83391 1.90773 1.53301 1.17933 1.79828 1.21193 0.97274 0.91792 0.94734 1.67206 1.20992 1.05927 1.21014 1.23453 0.96677 1.01501 0.88064 1.22938 0.93459 0.92807 1.01505 1.19378 0.99974 0.96932 0.94765 1.22000 0.92050 0.94666 0.98849 1.22533 1.00517 0.96257 0.98007 1.23893 0.90573 1.00400 0.89650 1.68225 1.09583 1.08766 1.32976 1.19589 0.97632 0.92728 0.94049 0.92120 0.90183 0.91785 0.90714 0.93858 0.80045 0.94202 0.91723 0.94933 0.82984 0.90896 0.78037 0.78603 0.79069 0.79694 0.80132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.03 71.98 0.65 -3.55 16 2 C 0.14 4.79 3.22 44.97 0.14 4.94 16 3 H 0.09 3.06 7.00 -2.39 -0.02 3.04 16 4 C -0.12 -4.59 5.02 30.67 0.15 -4.44 16 5 C 0.18 7.35 2.52 45.02 0.11 7.46 16 6 H 0.05 2.25 6.43 -2.38 -0.02 2.23 16 7 N -0.74 -38.86 5.12 -322.82 -1.65 -40.52 16 8 C -0.23 -13.20 9.93 84.04 0.83 -12.37 16 9 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 11 N -0.97 -61.41 13.06 21.65 0.28 -61.12 16 12 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 16 C -0.14 -5.29 5.66 30.67 0.17 -5.12 16 17 C 0.08 2.57 5.51 86.36 0.48 3.05 16 18 N -0.58 -19.82 2.68 -798.34 -2.14 -21.96 16 19 C 0.56 20.18 7.65 86.80 0.66 20.84 16 20 O -0.54 -22.56 14.68 -3.85 -0.06 -22.62 16 21 C 0.10 3.03 6.67 42.46 0.28 3.31 16 22 N -0.44 -10.71 6.02 -184.13 -1.11 -11.82 16 23 C 0.05 0.74 11.12 84.56 0.94 1.68 16 24 C -0.09 -0.94 9.93 22.68 0.23 -0.72 16 25 C -0.10 -1.72 5.75 -21.27 -0.12 -1.84 16 26 C -0.05 -0.44 9.94 22.49 0.22 -0.22 16 27 C -0.15 -1.40 10.03 22.18 0.22 -1.18 16 28 C 0.13 2.27 11.14 85.06 0.95 3.22 16 29 N -0.49 -14.00 8.52 -187.91 -1.60 -15.60 16 30 C 0.08 2.28 6.61 40.63 0.27 2.55 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.06 1.82 5.72 -2.39 -0.01 1.80 16 34 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.37 21.19 7.80 -92.71 -0.72 20.47 16 37 H 0.25 15.28 8.31 -92.70 -0.77 14.51 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.15 4.47 3.96 -71.78 -0.28 4.19 16 41 H 0.07 2.11 7.50 -2.39 -0.02 2.09 16 42 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.20 0.10 8.06 -2.91 -0.02 0.08 16 44 H 0.19 -0.13 8.06 -2.91 -0.02 -0.15 16 45 H 0.19 0.08 8.06 -2.91 -0.02 0.06 16 46 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -83.61 369.88 2.44 -81.17 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.02 Total: 30.27 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 6.67 Total: 13.37 kcal Atomic # 7 Polarization: -144.81 SS G_CDS: -6.22 Total: -151.03 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.06 Total: -22.62 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -83.61 2.44 -81.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044639706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.428 kcal (2) G-P(sol) polarization free energy of solvation -83.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds