Wall clock time and date at job start Sat Apr 11 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.58809 * 2 1 4 4 C 1.53193 * 109.70221 * 239.62648 * 2 1 3 5 5 C 1.53043 * 109.31284 * 185.49494 * 4 2 1 6 6 H 1.09000 * 109.45927 * 301.37533 * 5 4 2 7 7 N 1.46493 * 109.46080 * 181.40145 * 5 4 2 8 8 C 1.36940 * 120.00092 * 154.97210 * 7 5 4 9 9 H 1.08001 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00260 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00102 * 180.02562 * 10 8 7 12 12 Si 1.86810 * 119.99910 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.46789 * 89.99646 * 12 10 8 14 14 H 1.48504 * 109.46847 * 329.99781 * 12 10 8 15 15 H 1.48499 * 109.47072 * 209.99818 * 12 10 8 16 16 C 1.53036 * 109.52678 * 61.38720 * 5 4 2 17 17 C 1.53193 * 109.31462 * 298.63142 * 16 5 4 18 18 N 1.46922 * 108.77570 * 54.62913 * 17 16 5 19 19 C 1.34782 * 120.62946 * 126.41566 * 18 17 16 20 20 O 1.21541 * 120.00076 * 174.68167 * 19 18 17 21 21 C 1.47895 * 119.99781 * 354.68236 * 19 18 17 22 22 N 1.32142 * 120.03563 * 46.36889 * 21 19 18 23 23 C 1.31973 * 122.77397 * 179.97438 * 22 21 19 24 24 C 1.37781 * 121.72628 * 359.97438 * 23 22 21 25 25 C 1.40386 * 118.72775 * 0.02562 * 24 23 22 26 26 C 1.40643 * 122.27737 * 180.02562 * 25 24 23 27 27 C 1.36648 * 117.95227 * 179.33743 * 26 25 24 28 28 C 1.39395 * 119.91912 * 0.58885 * 27 26 25 29 29 N 1.31203 * 121.85852 * 359.60028 * 28 27 26 30 30 C 1.33257 * 121.22028 * 359.97438 * 29 28 27 31 31 H 1.09000 * 109.47320 * 310.09713 * 1 2 3 32 32 H 1.09000 * 109.46904 * 70.09318 * 1 2 3 33 33 H 1.09002 * 109.47486 * 190.09178 * 1 2 3 34 34 H 1.09006 * 109.48344 * 65.55300 * 4 2 1 35 35 H 1.08993 * 109.51356 * 305.45481 * 4 2 1 36 36 H 0.97002 * 120.00050 * 334.97149 * 7 5 4 37 37 H 0.97003 * 120.00000 * 180.02562 * 11 10 8 38 38 H 1.09008 * 109.49975 * 58.57918 * 16 5 4 39 39 H 1.08998 * 109.50000 * 178.67818 * 16 5 4 40 40 H 1.09000 * 109.58963 * 174.42345 * 17 16 5 41 41 H 1.09000 * 109.58408 * 294.84567 * 17 16 5 42 42 H 1.07995 * 119.13778 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.63613 * 180.02562 * 24 23 22 44 44 H 1.08006 * 121.01875 * 359.96350 * 26 25 24 45 45 H 1.07997 * 120.03529 * 180.16752 * 27 26 25 46 46 H 1.08005 * 119.06715 * 179.57600 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7293 -1.2443 5 6 3.5706 -0.8444 -1.1673 6 1 4.0069 0.1519 -1.0963 7 7 4.0710 -1.5117 -2.3716 8 6 5.3553 -1.2916 -2.7927 9 1 5.9994 -0.6265 -2.2368 10 6 5.8298 -1.9243 -3.9336 11 7 7.0643 -1.7132 -4.3380 12 14 4.7159 -3.0755 -4.8949 13 1 3.9812 -2.3039 -5.9293 14 1 3.7448 -3.7120 -3.9691 15 1 5.5365 -4.1255 -5.5501 16 6 3.9601 -1.6608 0.0671 17 6 3.4653 -0.9425 1.3265 18 7 2.0225 -0.6980 1.1953 19 6 1.1670 -1.1060 2.1536 20 8 -0.0106 -0.8138 2.0815 21 6 1.6612 -1.9091 3.2929 22 7 2.7593 -1.5452 3.9317 23 6 3.2478 -2.2209 4.9546 24 6 2.6369 -3.3617 5.4276 25 6 1.4647 -3.8099 4.7983 26 6 0.7803 -4.9640 5.2196 27 6 -0.3601 -5.3120 4.5520 28 6 -0.8030 -4.5368 3.4814 29 7 -0.1580 -3.4633 3.0902 30 6 0.9557 -3.0646 3.7038 31 1 -0.3634 0.6619 0.7861 32 1 -0.3633 0.3499 -0.9663 33 1 -0.3634 -1.0118 0.1801 34 1 1.7686 -0.1677 -2.1363 35 1 1.6081 -1.7261 -1.2902 36 1 3.4927 -2.1095 -2.8708 37 1 7.3957 -2.1550 -5.1355 38 1 3.5036 -2.6490 0.0088 39 1 5.0446 -1.7625 0.1087 40 1 3.6523 -1.5665 2.2004 41 1 3.9885 0.0075 1.4346 42 1 4.1501 -1.8705 5.4336 43 1 3.0518 -3.9009 6.2664 44 1 1.1393 -5.5514 6.0519 45 1 -0.9137 -6.1904 4.8490 46 1 -1.7022 -4.8284 2.9591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044639708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:19 Heat of formation + Delta-G solvation = 74.979545 kcal Electronic energy + Delta-G solvation = -29795.851907 eV Core-core repulsion = 25879.909582 eV Total energy + Delta-G solvation = -3915.942325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70262 -40.12355 -38.34259 -37.37432 -34.59141 -34.22202 -32.62112 -31.95116 -31.82352 -30.66865 -29.68149 -27.15543 -25.73474 -24.51920 -24.37057 -23.67978 -22.60505 -21.65295 -20.28120 -19.62402 -18.78115 -17.87523 -17.61847 -17.32650 -16.46730 -15.94188 -15.60858 -15.14441 -14.82783 -14.74233 -14.57713 -14.38025 -14.11287 -13.67468 -13.61785 -13.44039 -13.25201 -13.01377 -12.82477 -12.58120 -12.52927 -12.12777 -12.04169 -11.78795 -11.41265 -11.13737 -10.97916 -10.89703 -10.72869 -10.52385 -10.27127 -10.16738 -9.95223 -9.80243 -9.67380 -9.57847 -9.04935 -8.90314 -8.73521 -8.35443 -7.26015 -5.76480 -3.11729 -0.34767 0.31408 1.34558 2.44795 2.79184 2.96056 3.38538 3.42150 3.46055 3.66309 3.79679 3.96288 4.11320 4.21149 4.33109 4.41035 4.60020 4.76495 4.82331 4.97378 5.04961 5.11648 5.19255 5.23083 5.30855 5.38557 5.48334 5.53757 5.60695 5.66643 5.68641 5.85906 5.87985 5.96668 6.01406 6.11521 6.15439 6.21714 6.36576 6.41226 6.45675 6.52126 6.75021 6.89156 7.01570 7.30993 7.49223 7.58854 7.99982 8.25501 8.42851 9.21397 9.94319 10.14580 11.41880 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.003127 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.558202 B = 8953.016910 C = 9207.212767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.183 3.817 6 H 0.058 0.942 7 N -0.748 5.748 8 C -0.242 4.242 9 H 0.091 0.909 10 C 0.004 3.996 11 N -0.934 5.934 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.292 1.292 16 C -0.152 4.152 17 C 0.104 3.896 18 N -0.586 5.586 19 C 0.578 3.422 20 O -0.507 6.507 21 C 0.152 3.848 22 N -0.439 5.439 23 C 0.076 3.924 24 C -0.128 4.128 25 C -0.082 4.082 26 C -0.062 4.062 27 C -0.156 4.156 28 C 0.134 3.866 29 N -0.436 5.436 30 C 0.104 3.896 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.168 0.832 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.144 0.856 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.007 -5.649 23.263 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 H 0.093 0.907 4 C -0.177 4.177 5 C 0.074 3.926 6 H 0.076 0.924 7 N -0.390 5.390 8 C -0.372 4.372 9 H 0.109 0.891 10 C -0.191 4.191 11 N -0.582 5.582 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.204 1.204 15 H -0.218 1.218 16 C -0.193 4.193 17 C -0.019 4.019 18 N -0.319 5.319 19 C 0.363 3.637 20 O -0.382 6.382 21 C -0.001 4.001 22 N -0.152 5.152 23 C -0.070 4.070 24 C -0.149 4.149 25 C -0.089 4.089 26 C -0.088 4.088 27 C -0.177 4.177 28 C -0.040 4.040 29 N -0.144 5.144 30 C -0.020 4.020 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.185 0.815 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.162 0.838 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.087 -4.059 22.244 26.641 hybrid contribution -0.517 -2.390 0.335 2.468 sum -14.604 -6.449 22.579 27.653 Atomic orbital electron populations 1.22196 0.92747 1.04133 1.00381 1.21323 0.95515 0.95245 0.83269 0.90665 1.22341 0.97510 1.00988 0.96897 1.20155 0.90769 0.95420 0.86282 0.92407 1.42804 1.13222 1.54724 1.28264 1.19082 0.87725 1.23077 1.07276 0.89137 1.24661 0.96091 1.00118 0.98254 1.69699 1.15042 1.47269 1.26225 0.86570 0.80340 0.81334 0.80411 1.21040 1.20407 1.21810 1.22667 1.02028 0.99632 0.95004 1.22105 0.78762 1.01364 0.99643 1.48068 1.07879 1.56304 1.19665 1.17534 0.85560 0.79239 0.81417 1.90852 1.16061 1.55567 1.75702 1.21566 0.90288 0.92220 0.96007 1.67586 1.09589 1.30969 1.07011 1.22680 0.99706 0.92009 0.92611 1.22361 0.94500 0.97678 1.00366 1.18942 0.96802 0.96581 0.96566 1.21441 0.94171 0.94299 0.98863 1.22105 0.97261 1.01384 0.96954 1.23248 0.98358 0.89225 0.93126 1.68084 1.05303 1.13590 1.27453 1.19400 0.93561 0.95515 0.93569 0.91232 0.93624 0.90988 0.90382 0.91903 0.80694 0.93095 0.92731 0.90250 0.89065 0.90956 0.81481 0.83586 0.83649 0.83823 0.81716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.64 37.15 0.28 -1.73 16 2 C 0.15 2.25 3.49 -67.60 -0.24 2.01 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 4 C -0.14 -2.29 4.83 -26.61 -0.13 -2.42 16 5 C 0.18 3.52 2.73 -67.89 -0.19 3.34 16 6 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 7 N -0.75 -17.71 4.92 -53.39 -0.26 -17.98 16 8 C -0.24 -6.76 10.41 -15.06 -0.16 -6.92 16 9 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 10 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 11 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 12 Si 0.88 22.30 27.74 -169.99 -4.71 17.59 16 13 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.68 6.52 56.52 0.37 -6.32 16 15 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 16 C -0.15 -2.68 5.66 -26.61 -0.15 -2.84 16 17 C 0.10 1.56 6.08 -3.71 -0.02 1.54 16 18 N -0.59 -9.10 2.97 -166.31 -0.49 -9.60 16 19 C 0.58 9.40 6.98 -12.30 -0.09 9.32 16 20 O -0.51 -9.05 12.01 5.33 0.06 -8.99 16 21 C 0.15 2.22 5.88 -82.54 -0.49 1.74 16 22 N -0.44 -5.57 7.59 -9.55 -0.07 -5.65 16 23 C 0.08 0.69 11.12 -17.66 -0.20 0.50 16 24 C -0.13 -1.01 9.93 -38.94 -0.39 -1.40 16 25 C -0.08 -0.82 5.75 -106.79 -0.61 -1.43 16 26 C -0.06 -0.43 9.94 -39.25 -0.39 -0.82 16 27 C -0.16 -1.03 10.03 -39.73 -0.40 -1.43 16 28 C 0.13 1.25 11.14 -17.39 -0.19 1.05 16 29 N -0.44 -5.94 9.37 -10.75 -0.10 -6.04 16 30 C 0.10 1.40 6.59 -84.62 -0.56 0.85 16 31 H 0.07 1.06 6.89 -51.93 -0.36 0.70 16 32 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.07 1.18 6.58 -51.93 -0.34 0.84 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.36 8.52 5.66 -40.82 -0.23 8.29 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 38 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.09 1.31 4.78 -51.93 -0.25 1.06 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 44 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 45 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 46 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -35.50 368.63 -9.51 -45.01 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.26 Total: 7.26 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -4.00 Total: 1.38 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -0.16 Total: -67.81 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.06 Total: -8.99 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.50 -9.51 -45.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044639708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.994 kcal (2) G-P(sol) polarization free energy of solvation -35.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds