Wall clock time and date at job start Sat Apr 11 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.58809 * 2 1 4 4 C 1.53193 * 109.70221 * 239.62648 * 2 1 3 5 5 C 1.53043 * 109.31284 * 185.49494 * 4 2 1 6 6 H 1.09000 * 109.45927 * 301.37533 * 5 4 2 7 7 N 1.46493 * 109.46080 * 181.40145 * 5 4 2 8 8 C 1.36940 * 120.00092 * 154.97210 * 7 5 4 9 9 H 1.08001 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00260 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00102 * 180.02562 * 10 8 7 12 12 Si 1.86810 * 119.99910 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.46789 * 89.99646 * 12 10 8 14 14 H 1.48504 * 109.46847 * 329.99781 * 12 10 8 15 15 H 1.48499 * 109.47072 * 209.99818 * 12 10 8 16 16 C 1.53036 * 109.52678 * 61.38720 * 5 4 2 17 17 C 1.53193 * 109.31462 * 298.63142 * 16 5 4 18 18 N 1.46922 * 108.77570 * 54.62913 * 17 16 5 19 19 C 1.34782 * 120.62946 * 126.41566 * 18 17 16 20 20 O 1.21541 * 120.00076 * 174.68167 * 19 18 17 21 21 C 1.47895 * 119.99781 * 354.68236 * 19 18 17 22 22 N 1.32142 * 120.03563 * 46.36889 * 21 19 18 23 23 C 1.31973 * 122.77397 * 179.97438 * 22 21 19 24 24 C 1.37781 * 121.72628 * 359.97438 * 23 22 21 25 25 C 1.40386 * 118.72775 * 0.02562 * 24 23 22 26 26 C 1.40643 * 122.27737 * 180.02562 * 25 24 23 27 27 C 1.36648 * 117.95227 * 179.33743 * 26 25 24 28 28 C 1.39395 * 119.91912 * 0.58885 * 27 26 25 29 29 N 1.31203 * 121.85852 * 359.60028 * 28 27 26 30 30 C 1.33257 * 121.22028 * 359.97438 * 29 28 27 31 31 H 1.09000 * 109.47320 * 310.09713 * 1 2 3 32 32 H 1.09000 * 109.46904 * 70.09318 * 1 2 3 33 33 H 1.09002 * 109.47486 * 190.09178 * 1 2 3 34 34 H 1.09006 * 109.48344 * 65.55300 * 4 2 1 35 35 H 1.08993 * 109.51356 * 305.45481 * 4 2 1 36 36 H 0.97002 * 120.00050 * 334.97149 * 7 5 4 37 37 H 0.97003 * 120.00000 * 180.02562 * 11 10 8 38 38 H 1.09008 * 109.49975 * 58.57918 * 16 5 4 39 39 H 1.08998 * 109.50000 * 178.67818 * 16 5 4 40 40 H 1.09000 * 109.58963 * 174.42345 * 17 16 5 41 41 H 1.09000 * 109.58408 * 294.84567 * 17 16 5 42 42 H 1.07995 * 119.13778 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.63613 * 180.02562 * 24 23 22 44 44 H 1.08006 * 121.01875 * 359.96350 * 26 25 24 45 45 H 1.07997 * 120.03529 * 180.16752 * 27 26 25 46 46 H 1.08005 * 119.06715 * 179.57600 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7293 -1.2443 5 6 3.5706 -0.8444 -1.1673 6 1 4.0069 0.1519 -1.0963 7 7 4.0710 -1.5117 -2.3716 8 6 5.3553 -1.2916 -2.7927 9 1 5.9994 -0.6265 -2.2368 10 6 5.8298 -1.9243 -3.9336 11 7 7.0643 -1.7132 -4.3380 12 14 4.7159 -3.0755 -4.8949 13 1 3.9812 -2.3039 -5.9293 14 1 3.7448 -3.7120 -3.9691 15 1 5.5365 -4.1255 -5.5501 16 6 3.9601 -1.6608 0.0671 17 6 3.4653 -0.9425 1.3265 18 7 2.0225 -0.6980 1.1953 19 6 1.1670 -1.1060 2.1536 20 8 -0.0106 -0.8138 2.0815 21 6 1.6612 -1.9091 3.2929 22 7 2.7593 -1.5452 3.9317 23 6 3.2478 -2.2209 4.9546 24 6 2.6369 -3.3617 5.4276 25 6 1.4647 -3.8099 4.7983 26 6 0.7803 -4.9640 5.2196 27 6 -0.3601 -5.3120 4.5520 28 6 -0.8030 -4.5368 3.4814 29 7 -0.1580 -3.4633 3.0902 30 6 0.9557 -3.0646 3.7038 31 1 -0.3634 0.6619 0.7861 32 1 -0.3633 0.3499 -0.9663 33 1 -0.3634 -1.0118 0.1801 34 1 1.7686 -0.1677 -2.1363 35 1 1.6081 -1.7261 -1.2902 36 1 3.4927 -2.1095 -2.8708 37 1 7.3957 -2.1550 -5.1355 38 1 3.5036 -2.6490 0.0088 39 1 5.0446 -1.7625 0.1087 40 1 3.6523 -1.5665 2.2004 41 1 3.9885 0.0075 1.4346 42 1 4.1501 -1.8705 5.4336 43 1 3.0518 -3.9009 6.2664 44 1 1.1393 -5.5514 6.0519 45 1 -0.9137 -6.1904 4.8490 46 1 -1.7022 -4.8284 2.9591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044639708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:19 Heat of formation + Delta-G solvation = 50.907646 kcal Electronic energy + Delta-G solvation = -29796.895743 eV Core-core repulsion = 25879.909582 eV Total energy + Delta-G solvation = -3916.986161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.49887 -41.24048 -39.10623 -38.76181 -36.30133 -34.99510 -33.93799 -33.66908 -32.55197 -31.73221 -31.19304 -28.51940 -26.58331 -25.88906 -25.20446 -24.69009 -24.21867 -22.79767 -21.74934 -20.78420 -19.74895 -19.43362 -18.59338 -18.29826 -17.39358 -17.08762 -16.74592 -16.61948 -15.97689 -15.80863 -15.58554 -15.49558 -15.27485 -15.10430 -14.80721 -14.62153 -14.28866 -14.14568 -13.97788 -13.90890 -13.72771 -13.41328 -13.12717 -13.08182 -12.98147 -12.70717 -12.61143 -12.15889 -12.05383 -11.98282 -11.84121 -11.79179 -11.44877 -11.05625 -10.89703 -10.68763 -10.36296 -10.09687 -9.65113 -9.45944 -9.31400 -8.02218 -5.35415 -1.05515 -0.35739 0.66134 1.36961 1.39072 1.46066 1.54549 1.78215 2.02223 2.47637 2.89530 3.01288 3.17363 3.28875 3.40451 3.47948 3.61999 3.69996 3.77334 3.91912 3.99617 4.00801 4.16255 4.21677 4.25329 4.29361 4.45472 4.50180 4.54839 4.59410 4.61319 4.63887 4.79932 4.85343 4.93641 4.95490 5.00031 5.09621 5.11517 5.21465 5.32846 5.37693 5.40977 5.59822 5.67920 5.77534 6.21828 6.31603 6.56821 6.85087 7.06991 7.09134 7.83016 8.02502 9.19228 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.003127 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.558202 B = 8953.016910 C = 9207.212767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.149 3.851 3 H 0.088 0.912 4 C -0.126 4.126 5 C 0.178 3.822 6 H 0.053 0.947 7 N -0.751 5.751 8 C -0.225 4.225 9 H 0.061 0.939 10 C -0.062 4.062 11 N -0.983 5.983 12 Si 0.951 3.049 13 H -0.277 1.277 14 H -0.259 1.259 15 H -0.296 1.296 16 C -0.140 4.140 17 C 0.117 3.883 18 N -0.591 5.591 19 C 0.575 3.425 20 O -0.534 6.534 21 C 0.104 3.896 22 N -0.452 5.452 23 C 0.054 3.946 24 C -0.097 4.097 25 C -0.103 4.103 26 C -0.051 4.051 27 C -0.153 4.153 28 C 0.131 3.869 29 N -0.497 5.497 30 C 0.080 3.920 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.363 0.637 37 H 0.257 0.743 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.200 0.800 43 H 0.194 0.806 44 H 0.190 0.810 45 H 0.186 0.814 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.302 -7.886 25.929 31.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.046 3.954 3 H 0.105 0.895 4 C -0.165 4.165 5 C 0.070 3.930 6 H 0.071 0.929 7 N -0.394 5.394 8 C -0.356 4.356 9 H 0.079 0.921 10 C -0.253 4.253 11 N -0.634 5.634 12 Si 0.779 3.221 13 H -0.204 1.204 14 H -0.184 1.184 15 H -0.223 1.223 16 C -0.181 4.181 17 C -0.006 4.006 18 N -0.323 5.323 19 C 0.361 3.639 20 O -0.410 6.410 21 C -0.047 4.047 22 N -0.165 5.165 23 C -0.093 4.093 24 C -0.117 4.117 25 C -0.110 4.110 26 C -0.076 4.076 27 C -0.174 4.174 28 C -0.042 4.042 29 N -0.206 5.206 30 C -0.043 4.043 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.196 0.804 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.216 0.784 43 H 0.211 0.789 44 H 0.208 0.792 45 H 0.203 0.797 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -15.430 -6.282 24.945 29.997 hybrid contribution -0.132 -1.753 -0.289 1.781 sum -15.563 -8.035 24.656 30.243 Atomic orbital electron populations 1.22008 0.92260 1.02724 1.00995 1.21349 0.95796 0.95591 0.82619 0.89458 1.22200 0.95107 1.01027 0.98120 1.20359 0.92550 0.94864 0.85203 0.92917 1.42825 1.11747 1.55122 1.29672 1.19040 0.88889 1.21323 1.06385 0.92056 1.25425 0.97600 1.02530 0.99774 1.69869 1.17240 1.49176 1.27069 0.85472 0.78571 0.79025 0.79058 1.20357 1.18413 1.22270 1.22456 1.00864 0.99109 0.95663 1.21984 0.78670 1.01594 0.98374 1.48114 1.07905 1.56505 1.19813 1.17916 0.85258 0.78787 0.81919 1.90808 1.17067 1.56475 1.76698 1.21240 0.92456 0.93918 0.97067 1.67446 1.09141 1.31873 1.08021 1.23293 1.00937 0.92749 0.92291 1.22908 0.92573 0.96339 0.99886 1.19342 0.97979 0.97621 0.96084 1.21996 0.93402 0.92960 0.99241 1.22510 0.97400 1.01937 0.95536 1.23828 0.98383 0.88263 0.93748 1.68026 1.06749 1.16094 1.29735 1.19567 0.93912 0.95875 0.94971 0.92009 0.91827 0.93028 0.89556 0.92555 0.80438 0.93386 0.93777 0.91849 0.88103 0.90056 0.78363 0.78867 0.79249 0.79718 0.79886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.64 7.64 71.98 0.55 -3.09 16 2 C 0.15 4.51 3.49 44.97 0.16 4.66 16 3 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 4 C -0.13 -4.13 4.83 30.67 0.15 -3.98 16 5 C 0.18 6.90 2.73 45.02 0.12 7.03 16 6 H 0.05 2.11 8.08 -2.39 -0.02 2.09 16 7 N -0.75 -35.65 4.92 -322.83 -1.59 -37.24 16 8 C -0.23 -12.86 10.41 84.03 0.87 -11.98 16 9 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 10 C -0.06 -3.67 5.50 84.86 0.47 -3.21 16 11 N -0.98 -63.25 13.97 21.65 0.30 -62.94 16 12 Si 0.95 46.36 27.74 68.60 1.90 48.26 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.26 -11.68 6.52 99.48 0.65 -11.03 16 15 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 16 C -0.14 -5.03 5.66 30.67 0.17 -4.86 16 17 C 0.12 3.54 6.08 86.36 0.52 4.06 16 18 N -0.59 -18.75 2.97 -798.37 -2.37 -21.12 16 19 C 0.57 19.47 6.98 86.80 0.61 20.08 16 20 O -0.53 -20.05 12.01 -3.85 -0.05 -20.09 16 21 C 0.10 3.12 5.88 42.46 0.25 3.37 16 22 N -0.45 -11.35 7.59 -184.13 -1.40 -12.74 16 23 C 0.05 0.87 11.12 84.56 0.94 1.81 16 24 C -0.10 -1.18 9.93 22.68 0.23 -0.95 16 25 C -0.10 -1.80 5.75 -21.27 -0.12 -1.93 16 26 C -0.05 -0.49 9.94 22.48 0.22 -0.27 16 27 C -0.15 -1.48 10.03 22.18 0.22 -1.26 16 28 C 0.13 2.28 11.14 85.07 0.95 3.22 16 29 N -0.50 -13.78 9.37 -187.91 -1.76 -15.54 16 30 C 0.08 2.17 6.59 40.63 0.27 2.43 16 31 H 0.06 1.93 6.89 -2.39 -0.02 1.91 16 32 H 0.06 1.61 8.12 -2.39 -0.02 1.59 16 33 H 0.05 1.75 6.58 -2.39 -0.02 1.73 16 34 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.36 16.83 5.66 -92.71 -0.52 16.31 16 37 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.10 2.94 4.78 -2.39 -0.01 2.93 16 41 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.19 0.41 8.06 -2.91 -0.02 0.39 16 44 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 45 H 0.19 0.19 8.06 -2.91 -0.02 0.17 16 46 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -82.51 368.63 2.04 -80.47 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.43 Total: 25.80 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 6.58 Total: 15.15 kcal Atomic # 7 Polarization: -142.77 SS G_CDS: -6.82 Total: -149.59 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.90 Total: 48.26 kcal Total: -82.51 2.04 -80.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044639708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.375 kcal (2) G-P(sol) polarization free energy of solvation -82.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds