Wall clock time and date at job start Sat Apr 11 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.58745 * 2 1 4 4 C 1.53194 * 109.58282 * 239.57451 * 2 1 3 5 5 C 1.53039 * 109.31078 * 294.84591 * 4 2 1 6 6 H 1.09005 * 109.46009 * 58.66281 * 5 4 2 7 7 N 1.46510 * 109.45686 * 178.61362 * 5 4 2 8 8 C 1.36932 * 119.99712 * 204.99746 * 7 5 4 9 9 H 1.08004 * 120.00617 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99695 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99863 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 120.00172 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46797 * 90.00223 * 12 10 8 14 14 H 1.48497 * 109.47464 * 210.00049 * 12 10 8 15 15 H 1.48501 * 109.46909 * 330.00297 * 12 10 8 16 16 C 1.53037 * 109.54032 * 298.63629 * 5 4 2 17 17 C 1.52754 * 109.38426 * 61.24254 * 16 5 4 18 18 N 1.46922 * 109.58661 * 120.28723 * 2 1 3 19 19 C 1.34778 * 120.62916 * 246.15336 * 18 2 1 20 20 O 1.21547 * 120.00020 * 5.00787 * 19 18 2 21 21 C 1.47911 * 120.00016 * 185.01241 * 19 18 2 22 22 N 1.32377 * 120.63339 * 284.10445 * 21 19 18 23 23 N 1.28093 * 123.18504 * 180.02562 * 22 21 19 24 24 C 1.31798 * 123.49151 * 0.02562 * 23 22 21 25 25 C 1.40410 * 119.14028 * 359.97438 * 24 23 22 26 26 C 1.40228 * 122.73568 * 179.97438 * 25 24 23 27 27 C 1.36259 * 119.36769 * 180.02562 * 26 25 24 28 28 C 1.39378 * 121.07378 * 0.25763 * 27 26 25 29 29 C 1.36367 * 121.08663 * 359.47081 * 28 27 26 30 30 C 1.39825 * 119.41905 * 0.51976 * 29 28 27 31 31 H 1.09001 * 109.46995 * 299.71627 * 1 2 3 32 32 H 1.09000 * 109.47267 * 59.71133 * 1 2 3 33 33 H 1.08993 * 109.47325 * 179.71692 * 1 2 3 34 34 H 1.08997 * 109.49641 * 54.80209 * 4 2 1 35 35 H 1.09004 * 109.49424 * 174.86552 * 4 2 1 36 36 H 0.97001 * 119.99734 * 25.00493 * 7 5 4 37 37 H 0.97006 * 119.99581 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.49487 * 181.32048 * 16 5 4 39 39 H 1.09001 * 109.49824 * 301.37948 * 16 5 4 40 40 H 1.08995 * 109.51309 * 185.70531 * 17 16 5 41 41 H 1.08996 * 109.43532 * 65.41901 * 17 16 5 42 42 H 1.07999 * 120.43416 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.31840 * 0.04639 * 26 25 24 44 44 H 1.07998 * 119.46703 * 179.97438 * 27 26 25 45 45 H 1.08001 * 119.45905 * 179.72388 * 28 27 26 46 46 H 1.08001 * 120.29003 * 180.24329 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2446 5 6 1.6413 -2.2055 -1.1674 6 1 0.5563 -2.2828 -1.0965 7 7 2.1022 -2.9007 -2.3719 8 6 1.4648 -4.0374 -2.7925 9 1 0.6221 -4.4212 -2.2365 10 6 1.9017 -4.6963 -3.9334 11 7 1.2888 -5.7886 -4.3379 12 14 3.3596 -4.0329 -4.8947 13 1 4.6127 -4.6324 -4.3697 14 1 3.2069 -4.3828 -6.3297 15 1 3.4182 -2.5563 -4.7486 16 6 2.2799 -2.8463 0.0670 17 6 1.7740 -2.1405 1.3237 18 7 2.0225 -0.6981 1.1953 19 6 2.6945 -0.0291 2.1531 20 8 2.8193 1.1776 2.0780 21 6 3.2801 -0.7635 3.2958 22 7 2.5116 -1.2046 4.2793 23 7 2.9665 -1.8448 5.2912 24 6 4.2425 -2.1295 5.4582 25 6 5.1678 -1.7179 4.4856 26 6 6.5417 -1.9796 4.5872 27 6 7.3788 -1.5476 3.6027 28 6 6.8921 -0.8463 2.5009 29 6 5.5614 -0.5794 2.3679 30 6 4.6727 -1.0074 3.3588 31 1 -0.3633 0.5094 0.8925 32 1 -0.3634 0.5183 -0.8874 33 1 -0.3633 -1.0276 -0.0051 34 1 1.6074 -0.2810 -2.1365 35 1 3.1296 -0.6515 -1.2909 36 1 2.8588 -2.5558 -2.8714 37 1 1.5939 -6.2489 -5.1355 38 1 2.0122 -3.9021 0.1084 39 1 3.3639 -2.7480 0.0083 40 1 2.3024 -2.5262 2.1955 41 1 0.7043 -2.3185 1.4338 42 1 4.5721 -2.6723 6.3317 43 1 6.9325 -2.5188 5.4374 44 1 8.4372 -1.7479 3.6795 45 1 7.5796 -0.5122 1.7380 46 1 5.1978 -0.0383 1.5068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044674302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:28 Heat of formation + Delta-G solvation = 61.033680 kcal Electronic energy + Delta-G solvation = -29904.121886 eV Core-core repulsion = 25987.574823 eV Total energy + Delta-G solvation = -3916.547063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.87511 -40.17089 -38.38800 -37.83095 -34.79216 -33.98776 -32.48056 -32.12520 -31.92327 -30.79744 -29.90352 -27.53632 -26.16870 -24.73250 -24.30727 -23.43242 -22.96032 -21.79449 -20.82856 -19.10661 -18.70102 -18.40910 -17.79957 -17.29796 -16.68703 -16.14739 -15.35021 -15.17340 -15.08984 -14.90923 -14.70851 -14.28201 -14.11522 -14.01127 -13.79328 -13.54157 -13.03689 -12.95849 -12.86325 -12.68141 -12.59324 -12.08052 -12.03099 -11.89576 -11.61394 -11.44699 -11.08824 -11.03436 -10.96290 -10.90673 -10.60771 -10.29029 -10.08761 -9.97637 -9.81115 -9.78102 -9.64125 -8.99720 -8.88211 -8.71394 -7.34500 -5.82621 -3.18846 -0.28766 0.20696 1.27049 2.20681 2.48604 2.68395 3.32205 3.35076 3.40856 3.46084 3.73535 3.92709 3.97815 4.16297 4.26979 4.53509 4.55385 4.62805 4.73066 4.87060 4.97482 5.03524 5.05856 5.17790 5.22618 5.30120 5.33187 5.38963 5.48576 5.52915 5.62821 5.67930 5.74356 5.78126 5.82971 5.89133 5.94576 5.99944 6.11731 6.20023 6.21288 6.28813 6.33056 6.43737 6.72339 6.86379 7.22373 7.85603 7.92782 8.36261 8.41634 9.14228 9.86845 10.06318 11.35551 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.003502 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.468120 B = 7993.910043 C = 8899.367358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.099 0.901 4 C -0.137 4.137 5 C 0.183 3.817 6 H 0.063 0.937 7 N -0.747 5.747 8 C -0.245 4.245 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.883 3.117 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.151 4.151 17 C 0.110 3.890 18 N -0.582 5.582 19 C 0.583 3.417 20 O -0.528 6.528 21 C 0.089 3.911 22 N -0.230 5.230 23 N -0.261 5.261 24 C 0.093 3.907 25 C -0.080 4.080 26 C -0.090 4.090 27 C -0.095 4.095 28 C -0.092 4.092 29 C -0.085 4.085 30 C -0.053 4.053 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.182 0.818 43 H 0.143 0.857 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.193 10.232 18.028 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.117 0.883 4 C -0.176 4.176 5 C 0.074 3.926 6 H 0.080 0.920 7 N -0.389 5.389 8 C -0.375 4.375 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.193 4.193 17 C -0.013 4.013 18 N -0.314 5.314 19 C 0.367 3.633 20 O -0.403 6.403 21 C -0.069 4.069 22 N -0.065 5.065 23 N -0.092 5.092 24 C -0.081 4.081 25 C -0.087 4.087 26 C -0.110 4.110 27 C -0.114 4.114 28 C -0.111 4.111 29 C -0.104 4.104 30 C -0.061 4.061 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.198 0.802 43 H 0.161 0.839 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.397 10.544 18.569 23.330 hybrid contribution 2.629 0.222 -1.251 2.920 sum 12.026 10.766 17.318 23.674 Atomic orbital electron populations 1.22154 0.94290 1.03241 1.02340 1.21298 0.94762 0.96959 0.82989 0.88275 1.22278 1.01241 0.97363 0.96757 1.20179 0.97618 0.88640 0.86209 0.91953 1.42783 1.37777 1.30351 1.27985 1.19066 1.11413 0.99483 1.07546 0.89136 1.24667 0.98919 0.97199 0.98163 1.69702 1.42683 1.19401 1.26216 0.86572 0.83607 0.78471 0.79989 1.21185 1.21720 1.20312 1.22590 1.00915 1.01129 0.94617 1.21776 1.01829 0.78466 0.99220 1.48185 1.53170 1.10067 1.19962 1.17483 0.78207 0.86425 0.81228 1.90820 1.59833 1.12764 1.76911 1.22948 0.91297 0.96051 0.96634 1.72966 1.30966 1.05291 0.97279 1.72682 1.14084 1.08707 1.13696 1.24795 0.90227 0.95067 0.98023 1.18852 0.95930 0.99025 0.94941 1.20998 0.90932 0.99313 0.99750 1.21153 1.00721 0.96189 0.93373 1.21177 0.95465 0.96572 0.97893 1.21023 0.93294 0.98213 0.97918 1.18558 0.93180 0.98400 0.95958 0.92405 0.91006 0.91332 0.90038 0.91906 0.80675 0.93021 0.89916 0.92419 0.91281 0.90364 0.80155 0.83923 0.84610 0.84546 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.03 37.16 0.34 -1.67 16 2 C 0.14 1.93 3.19 -67.60 -0.22 1.71 16 3 H 0.10 1.35 7.03 -51.93 -0.37 0.99 16 4 C -0.14 -2.03 5.02 -26.61 -0.13 -2.16 16 5 C 0.18 3.24 2.53 -67.89 -0.17 3.07 16 6 H 0.06 1.14 6.43 -51.93 -0.33 0.81 16 7 N -0.75 -16.67 4.93 -53.38 -0.26 -16.93 16 8 C -0.25 -6.61 10.41 -15.06 -0.16 -6.77 16 9 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 10 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 11 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 12 Si 0.88 21.50 27.74 -169.99 -4.71 16.78 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 16 C -0.15 -2.45 5.64 -26.84 -0.15 -2.61 16 17 C 0.11 1.55 5.91 -3.93 -0.02 1.53 16 18 N -0.58 -8.24 2.68 -166.57 -0.45 -8.68 16 19 C 0.58 8.88 6.22 -12.30 -0.08 8.80 16 20 O -0.53 -9.15 16.54 5.32 0.09 -9.06 16 21 C 0.09 1.28 4.81 -82.42 -0.40 0.88 16 22 N -0.23 -3.46 10.98 33.56 0.37 -3.09 16 23 N -0.26 -3.46 11.42 30.90 0.35 -3.11 16 24 C 0.09 0.90 11.20 -16.75 -0.19 0.71 16 25 C -0.08 -0.79 5.75 -106.85 -0.61 -1.40 16 26 C -0.09 -0.60 9.84 -39.55 -0.39 -0.99 16 27 C -0.10 -0.61 9.95 -39.87 -0.40 -1.00 16 28 C -0.09 -0.72 9.95 -39.83 -0.40 -1.12 16 29 C -0.08 -0.91 9.45 -39.66 -0.37 -1.28 16 30 C -0.05 -0.65 5.77 -106.57 -0.61 -1.27 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.88 5.74 -51.93 -0.30 0.59 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.36 7.98 5.66 -40.82 -0.23 7.75 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.97 6.02 -51.93 -0.31 0.66 16 41 H 0.08 1.06 7.52 -51.93 -0.39 0.67 16 42 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 44 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 45 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.14 1.54 7.33 -52.49 -0.38 1.15 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -34.15 372.32 -8.42 -42.57 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.13 Total: 7.25 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -4.06 Total: -3.49 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.79 Total: -59.66 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.15 -8.42 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044674302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.604 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds