Wall clock time and date at job start Sat Apr 11 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.58745 * 2 1 4 4 C 1.53194 * 109.58282 * 239.57451 * 2 1 3 5 5 C 1.53039 * 109.31078 * 294.84591 * 4 2 1 6 6 H 1.09005 * 109.46009 * 58.66281 * 5 4 2 7 7 N 1.46510 * 109.45686 * 178.61362 * 5 4 2 8 8 C 1.36932 * 119.99712 * 204.99746 * 7 5 4 9 9 H 1.08004 * 120.00617 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99695 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99863 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 120.00172 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46797 * 90.00223 * 12 10 8 14 14 H 1.48497 * 109.47464 * 210.00049 * 12 10 8 15 15 H 1.48501 * 109.46909 * 330.00297 * 12 10 8 16 16 C 1.53037 * 109.54032 * 298.63629 * 5 4 2 17 17 C 1.52754 * 109.38426 * 61.24254 * 16 5 4 18 18 N 1.46922 * 109.58661 * 120.28723 * 2 1 3 19 19 C 1.34778 * 120.62916 * 246.15336 * 18 2 1 20 20 O 1.21547 * 120.00020 * 5.00787 * 19 18 2 21 21 C 1.47911 * 120.00016 * 185.01241 * 19 18 2 22 22 N 1.32377 * 120.63339 * 284.10445 * 21 19 18 23 23 N 1.28093 * 123.18504 * 180.02562 * 22 21 19 24 24 C 1.31798 * 123.49151 * 0.02562 * 23 22 21 25 25 C 1.40410 * 119.14028 * 359.97438 * 24 23 22 26 26 C 1.40228 * 122.73568 * 179.97438 * 25 24 23 27 27 C 1.36259 * 119.36769 * 180.02562 * 26 25 24 28 28 C 1.39378 * 121.07378 * 0.25763 * 27 26 25 29 29 C 1.36367 * 121.08663 * 359.47081 * 28 27 26 30 30 C 1.39825 * 119.41905 * 0.51976 * 29 28 27 31 31 H 1.09001 * 109.46995 * 299.71627 * 1 2 3 32 32 H 1.09000 * 109.47267 * 59.71133 * 1 2 3 33 33 H 1.08993 * 109.47325 * 179.71692 * 1 2 3 34 34 H 1.08997 * 109.49641 * 54.80209 * 4 2 1 35 35 H 1.09004 * 109.49424 * 174.86552 * 4 2 1 36 36 H 0.97001 * 119.99734 * 25.00493 * 7 5 4 37 37 H 0.97006 * 119.99581 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.49487 * 181.32048 * 16 5 4 39 39 H 1.09001 * 109.49824 * 301.37948 * 16 5 4 40 40 H 1.08995 * 109.51309 * 185.70531 * 17 16 5 41 41 H 1.08996 * 109.43532 * 65.41901 * 17 16 5 42 42 H 1.07999 * 120.43416 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.31840 * 0.04639 * 26 25 24 44 44 H 1.07998 * 119.46703 * 179.97438 * 27 26 25 45 45 H 1.08001 * 119.45905 * 179.72388 * 28 27 26 46 46 H 1.08001 * 120.29003 * 180.24329 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2446 5 6 1.6413 -2.2055 -1.1674 6 1 0.5563 -2.2828 -1.0965 7 7 2.1022 -2.9007 -2.3719 8 6 1.4648 -4.0374 -2.7925 9 1 0.6221 -4.4212 -2.2365 10 6 1.9017 -4.6963 -3.9334 11 7 1.2888 -5.7886 -4.3379 12 14 3.3596 -4.0329 -4.8947 13 1 4.6127 -4.6324 -4.3697 14 1 3.2069 -4.3828 -6.3297 15 1 3.4182 -2.5563 -4.7486 16 6 2.2799 -2.8463 0.0670 17 6 1.7740 -2.1405 1.3237 18 7 2.0225 -0.6981 1.1953 19 6 2.6945 -0.0291 2.1531 20 8 2.8193 1.1776 2.0780 21 6 3.2801 -0.7635 3.2958 22 7 2.5116 -1.2046 4.2793 23 7 2.9665 -1.8448 5.2912 24 6 4.2425 -2.1295 5.4582 25 6 5.1678 -1.7179 4.4856 26 6 6.5417 -1.9796 4.5872 27 6 7.3788 -1.5476 3.6027 28 6 6.8921 -0.8463 2.5009 29 6 5.5614 -0.5794 2.3679 30 6 4.6727 -1.0074 3.3588 31 1 -0.3633 0.5094 0.8925 32 1 -0.3634 0.5183 -0.8874 33 1 -0.3633 -1.0276 -0.0051 34 1 1.6074 -0.2810 -2.1365 35 1 3.1296 -0.6515 -1.2909 36 1 2.8588 -2.5558 -2.8714 37 1 1.5939 -6.2489 -5.1355 38 1 2.0122 -3.9021 0.1084 39 1 3.3639 -2.7480 0.0083 40 1 2.3024 -2.5262 2.1955 41 1 0.7043 -2.3185 1.4338 42 1 4.5721 -2.6723 6.3317 43 1 6.9325 -2.5188 5.4374 44 1 8.4372 -1.7479 3.6795 45 1 7.5796 -0.5122 1.7380 46 1 5.1978 -0.0383 1.5068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044674302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:27 Heat of formation + Delta-G solvation = 38.452830 kcal Electronic energy + Delta-G solvation = -29905.101065 eV Core-core repulsion = 25987.574823 eV Total energy + Delta-G solvation = -3917.526243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.72803 -41.29880 -39.14248 -39.09274 -36.44459 -34.91278 -33.90604 -33.40667 -32.86998 -31.71761 -31.41231 -28.81032 -27.05739 -25.86734 -25.44688 -24.45760 -24.28317 -23.02104 -22.09122 -20.38429 -19.70881 -19.44188 -19.04641 -18.52470 -17.74188 -17.01356 -16.84405 -16.28770 -16.03665 -15.86533 -15.71883 -15.62229 -15.27188 -15.11480 -14.93320 -14.79860 -14.60652 -14.24625 -14.08505 -13.68961 -13.52788 -13.26467 -13.13197 -12.99359 -12.83346 -12.73326 -12.54135 -12.36864 -12.20348 -12.07221 -12.02467 -11.80149 -11.77848 -11.23055 -11.14016 -10.93854 -10.85628 -10.46011 -9.92742 -9.61102 -9.32592 -8.00889 -5.34663 -1.03044 -0.52363 0.56134 1.09002 1.38522 1.41101 1.48856 1.54940 1.81057 2.49397 2.68072 2.79574 3.16159 3.25446 3.30210 3.44203 3.50939 3.58908 3.69400 3.78572 3.88518 3.97046 4.09129 4.14565 4.16961 4.22078 4.37448 4.43680 4.45577 4.46498 4.55498 4.66166 4.68686 4.70621 4.83024 4.93562 4.95913 4.98464 5.09411 5.16787 5.22513 5.23124 5.29441 5.39892 5.48755 5.66548 5.78715 6.04659 6.22735 6.69782 7.08803 7.55251 7.84169 8.03577 9.20557 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.003502 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.468120 B = 7993.910043 C = 8899.367358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.102 0.898 4 C -0.126 4.126 5 C 0.179 3.821 6 H 0.055 0.945 7 N -0.749 5.749 8 C -0.227 4.227 9 H 0.059 0.941 10 C -0.062 4.062 11 N -0.984 5.984 12 Si 0.952 3.048 13 H -0.281 1.281 14 H -0.299 1.299 15 H -0.250 1.250 16 C -0.139 4.139 17 C 0.123 3.877 18 N -0.580 5.580 19 C 0.586 3.414 20 O -0.556 6.556 21 C 0.065 3.935 22 N -0.259 5.259 23 N -0.301 5.301 24 C 0.112 3.888 25 C -0.096 4.096 26 C -0.074 4.074 27 C -0.093 4.093 28 C -0.079 4.079 29 C -0.118 4.118 30 C -0.074 4.074 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.365 0.635 37 H 0.257 0.743 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.228 0.772 43 H 0.186 0.814 44 H 0.176 0.824 45 H 0.160 0.840 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.644 11.018 19.454 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.120 0.880 4 C -0.165 4.165 5 C 0.071 3.929 6 H 0.073 0.927 7 N -0.391 5.391 8 C -0.358 4.358 9 H 0.077 0.923 10 C -0.253 4.253 11 N -0.635 5.635 12 Si 0.779 3.221 13 H -0.207 1.207 14 H -0.226 1.226 15 H -0.174 1.174 16 C -0.180 4.180 17 C 0.000 4.000 18 N -0.311 5.311 19 C 0.371 3.629 20 O -0.434 6.434 21 C -0.094 4.094 22 N -0.093 5.093 23 N -0.132 5.132 24 C -0.062 4.062 25 C -0.104 4.104 26 C -0.094 4.094 27 C -0.112 4.112 28 C -0.098 4.098 29 C -0.138 4.138 30 C -0.081 4.081 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.198 0.802 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.244 0.756 43 H 0.204 0.796 44 H 0.193 0.807 45 H 0.177 0.823 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.840 11.373 20.043 26.381 hybrid contribution 1.652 -0.052 -1.551 2.266 sum 14.492 11.321 18.493 26.080 Atomic orbital electron populations 1.22129 0.93312 1.02968 1.03202 1.21318 0.95480 0.96777 0.82190 0.87967 1.22153 1.01583 0.94995 0.97740 1.20369 0.97289 0.90297 0.84966 0.92690 1.42770 1.37632 1.29340 1.29395 1.19012 1.09991 1.00225 1.06527 0.92342 1.25453 1.02368 0.97770 0.99746 1.69885 1.45094 1.21460 1.27061 0.85460 0.79732 0.79306 0.77584 1.20696 1.22563 1.17449 1.22367 1.00724 0.99967 0.94924 1.21596 1.01960 0.78379 0.98068 1.48193 1.52941 1.09871 1.20089 1.17693 0.77536 0.86137 0.81527 1.90780 1.60891 1.13951 1.77765 1.22801 0.92562 0.97571 0.96475 1.72835 1.32243 1.06234 0.98003 1.72582 1.16259 1.10530 1.13812 1.25519 0.88930 0.93035 0.98725 1.19191 0.97678 0.99215 0.94279 1.21531 0.89112 0.97899 1.00839 1.21650 1.02688 0.94680 0.92145 1.21583 0.94450 0.94959 0.98779 1.21017 0.94664 1.00217 0.97910 1.18762 0.92418 0.99435 0.97506 0.92280 0.89447 0.92110 0.89206 0.91470 0.80210 0.93445 0.91908 0.92410 0.91040 0.89908 0.75604 0.79644 0.80669 0.82256 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.03 71.98 0.65 -3.18 16 2 C 0.14 3.85 3.19 44.98 0.14 4.00 16 3 H 0.10 2.74 7.03 -2.39 -0.02 2.72 16 4 C -0.13 -3.59 5.02 30.67 0.15 -3.43 16 5 C 0.18 6.30 2.53 45.01 0.11 6.42 16 6 H 0.06 2.04 6.43 -2.38 -0.02 2.03 16 7 N -0.75 -33.09 4.93 -322.79 -1.59 -34.68 16 8 C -0.23 -12.43 10.41 84.03 0.87 -11.55 16 9 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 10 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 11 N -0.98 -62.14 13.97 21.65 0.30 -61.84 16 12 Si 0.95 44.29 27.74 68.60 1.90 46.19 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 15 H -0.25 -10.39 6.52 99.48 0.65 -9.74 16 16 C -0.14 -4.56 5.64 30.52 0.17 -4.39 16 17 C 0.12 3.54 5.91 86.22 0.51 4.05 16 18 N -0.58 -16.64 2.68 -799.18 -2.15 -18.78 16 19 C 0.59 18.40 6.22 86.81 0.54 18.94 16 20 O -0.56 -19.91 16.54 -3.86 -0.06 -19.97 16 21 C 0.07 1.92 4.81 42.44 0.20 2.12 16 22 N -0.26 -8.00 10.98 -47.73 -0.52 -8.52 16 23 N -0.30 -7.92 11.42 -56.15 -0.64 -8.56 16 24 C 0.11 1.90 11.20 85.23 0.95 2.86 16 25 C -0.10 -1.67 5.75 -21.31 -0.12 -1.80 16 26 C -0.07 -0.65 9.84 22.29 0.22 -0.43 16 27 C -0.09 -0.74 9.95 22.08 0.22 -0.52 16 28 C -0.08 -1.02 9.95 22.11 0.22 -0.80 16 29 C -0.12 -2.46 9.45 22.22 0.21 -2.25 16 30 C -0.07 -1.78 5.77 -21.13 -0.12 -1.90 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.56 5.74 -2.39 -0.01 1.55 16 34 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.36 15.52 5.66 -92.71 -0.52 15.00 16 37 H 0.26 15.50 8.31 -92.70 -0.77 14.72 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 2.07 6.02 -2.39 -0.01 2.06 16 41 H 0.08 2.30 7.52 -2.39 -0.02 2.29 16 42 H 0.23 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 44 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 45 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 46 H 0.12 2.81 7.33 -2.91 -0.02 2.79 16 Total: -1.00 -78.62 372.32 3.08 -75.53 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.43 Total: 25.60 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.41 Total: 5.04 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -4.60 Total: -132.38 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.06 Total: -19.97 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.90 Total: 46.19 kcal Total: -78.62 3.08 -75.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044674302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.985 kcal (2) G-P(sol) polarization free energy of solvation -78.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds