Wall clock time and date at job start Sat Apr 11 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.58574 * 2 1 4 4 C 1.53168 * 109.58891 * 239.56785 * 2 1 3 5 5 C 1.53046 * 109.32717 * 185.57086 * 4 2 1 6 6 H 1.08996 * 109.45639 * 181.38600 * 5 4 2 7 7 N 1.46496 * 109.45865 * 301.35979 * 5 4 2 8 8 C 1.36938 * 120.00010 * 205.02964 * 7 5 4 9 9 H 1.08009 * 119.99586 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00376 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00111 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00064 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47234 * 89.99804 * 12 10 8 14 14 H 1.48501 * 109.46894 * 329.99952 * 12 10 8 15 15 H 1.48499 * 109.47160 * 210.00419 * 12 10 8 16 16 C 1.53036 * 109.52550 * 61.37001 * 5 4 2 17 17 C 1.53193 * 109.31821 * 298.64021 * 16 5 4 18 18 N 1.46928 * 109.58883 * 120.28283 * 2 1 3 19 19 C 1.34778 * 120.63073 * 353.37736 * 18 2 1 20 20 O 1.21551 * 119.99601 * 357.83319 * 19 18 2 21 21 C 1.47863 * 119.99971 * 177.83235 * 19 18 2 22 22 C 1.40627 * 120.26059 * 32.95782 * 21 19 18 23 23 N 1.30861 * 121.65483 * 179.73379 * 22 21 19 24 24 C 1.33586 * 121.58410 * 0.54928 * 23 22 21 25 25 C 1.40645 * 121.62808 * 179.70238 * 24 23 22 26 26 N 1.31150 * 120.03968 * 180.02562 * 25 24 23 27 27 C 1.32498 * 122.88928 * 0.02562 * 26 25 24 28 28 C 1.36317 * 121.71133 * 359.97438 * 27 26 25 29 29 C 1.40595 * 118.65081 * 0.02562 * 28 27 26 30 30 C 1.38987 * 120.25906 * 213.23351 * 21 19 18 31 31 H 1.09002 * 109.46960 * 306.39355 * 1 2 3 32 32 H 1.08992 * 109.47508 * 66.39589 * 1 2 3 33 33 H 1.09006 * 109.47200 * 186.39703 * 1 2 3 34 34 H 1.08991 * 109.47790 * 65.62013 * 4 2 1 35 35 H 1.09002 * 109.49701 * 305.53311 * 4 2 1 36 36 H 0.97004 * 120.00535 * 25.02728 * 7 5 4 37 37 H 0.97002 * 119.99968 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.50035 * 58.59542 * 16 5 4 39 39 H 1.09003 * 109.49620 * 178.65522 * 16 5 4 40 40 H 1.08997 * 109.59177 * 174.41980 * 17 16 5 41 41 H 1.09000 * 109.58682 * 294.70735 * 17 16 5 42 42 H 1.07997 * 119.17382 * 0.02562 * 22 21 19 43 43 H 1.07995 * 119.98175 * 0.02562 * 25 24 23 44 44 H 1.07998 * 119.14237 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.67226 * 180.02562 * 28 27 26 46 46 H 1.08005 * 121.11425 * 359.95164 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7309 -1.2442 5 6 3.5675 -0.8494 -1.1692 6 1 3.9375 -1.3475 -2.0653 7 7 4.1570 0.4884 -1.0756 8 6 5.4410 0.7021 -1.5007 9 1 6.0193 -0.1158 -1.9046 10 6 5.9995 1.9698 -1.4125 11 7 7.2335 2.1753 -1.8216 12 14 4.9992 3.3846 -0.7146 13 1 5.2079 3.4616 0.7536 14 1 3.5590 3.1600 -0.9988 15 1 5.4352 4.6570 -1.3440 16 6 3.9569 -1.6656 0.0655 17 6 3.4651 -0.9453 1.3249 18 7 2.0225 -0.6980 1.1954 19 6 1.1675 -1.1035 2.1550 20 8 -0.0188 -0.8580 2.0552 21 6 1.6725 -1.8470 3.3291 22 6 2.9529 -1.5752 3.8430 23 7 3.4249 -2.2129 4.8837 24 6 2.7173 -3.1617 5.5029 25 6 3.2261 -3.8520 6.6177 26 7 2.5046 -4.7785 7.2017 27 6 1.2900 -5.1108 6.7895 28 6 0.7053 -4.5027 5.7187 29 6 1.4189 -3.4985 5.0412 30 6 0.8875 -2.8240 3.9301 31 1 -0.3633 0.6098 0.8273 32 1 -0.3634 0.4115 -0.9416 33 1 -0.3634 -1.0213 0.1145 34 1 1.7657 -0.1694 -2.1361 35 1 1.6028 -1.7269 -1.2888 36 1 3.6378 1.2230 -0.7125 37 1 7.6239 3.0611 -1.7597 38 1 3.4983 -2.6528 0.0085 39 1 5.0411 -1.7700 0.1054 40 1 3.6518 -1.5691 2.1991 41 1 3.9922 0.0026 1.4331 42 1 3.5602 -0.8178 3.3697 43 1 4.2116 -3.6190 6.9931 44 1 0.7492 -5.8836 7.3156 45 1 -0.2859 -4.7866 5.3974 46 1 -0.0982 -3.0567 3.5551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044685833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:48 Heat of formation + Delta-G solvation = 87.940915 kcal Electronic energy + Delta-G solvation = -29810.414434 eV Core-core repulsion = 25895.034156 eV Total energy + Delta-G solvation = -3915.380278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.75106 -40.54312 -38.34873 -37.67878 -34.57732 -34.11144 -33.42005 -32.04537 -31.28308 -30.80540 -29.76262 -27.41908 -25.88861 -25.17801 -24.16896 -23.22368 -23.04652 -22.07394 -20.79241 -19.17422 -18.77852 -17.90040 -17.81392 -17.36722 -16.48996 -15.98712 -15.68951 -15.40250 -15.03806 -14.73990 -14.59518 -14.38662 -14.33090 -13.89613 -13.64226 -13.44085 -13.29716 -13.25020 -12.99900 -12.75325 -12.56217 -12.39258 -12.22259 -11.73072 -11.40206 -11.22401 -11.09719 -11.00241 -10.89180 -10.57380 -10.33412 -10.23139 -10.14305 -9.93145 -9.65299 -9.61258 -9.12833 -9.02402 -8.84412 -8.47260 -7.37228 -5.84823 -3.21412 -0.28819 0.12773 1.37849 2.25500 2.75279 2.97356 3.29649 3.31828 3.39673 3.65517 3.72836 3.96329 4.06287 4.15147 4.28574 4.32366 4.50697 4.56000 4.84475 4.89975 5.01317 5.05430 5.10882 5.16349 5.20879 5.30904 5.38368 5.45580 5.48550 5.52349 5.60862 5.63086 5.75511 5.81794 5.90129 5.93775 6.05276 6.13189 6.18066 6.28435 6.33866 6.48561 6.54524 6.60059 6.80143 7.27560 7.37178 7.54213 7.90641 8.03133 8.33941 9.11445 9.83918 10.02950 11.33363 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.003186 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.726926 B = 8785.783502 C = 9716.695983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.144 3.856 3 H 0.076 0.924 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.062 0.938 7 N -0.746 5.746 8 C -0.245 4.245 9 H 0.091 0.909 10 C 0.008 3.992 11 N -0.931 5.931 12 Si 0.878 3.122 13 H -0.283 1.283 14 H -0.278 1.278 15 H -0.290 1.290 16 C -0.148 4.148 17 C 0.081 3.919 18 N -0.588 5.588 19 C 0.559 3.441 20 O -0.531 6.531 21 C -0.163 4.163 22 C 0.145 3.855 23 N -0.455 5.455 24 C 0.080 3.920 25 C 0.164 3.836 26 N -0.470 5.470 27 C 0.071 3.929 28 C -0.135 4.135 29 C -0.086 4.086 30 C -0.002 4.002 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.360 0.640 37 H 0.260 0.740 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.189 0.811 43 H 0.175 0.825 44 H 0.160 0.840 45 H 0.144 0.856 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.094 -12.900 13.025 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 H 0.094 0.906 4 C -0.176 4.176 5 C 0.069 3.931 6 H 0.080 0.920 7 N -0.390 5.390 8 C -0.375 4.375 9 H 0.109 0.891 10 C -0.188 4.188 11 N -0.579 5.579 12 Si 0.708 3.292 13 H -0.210 1.210 14 H -0.204 1.204 15 H -0.217 1.217 16 C -0.189 4.189 17 C -0.040 4.040 18 N -0.320 5.320 19 C 0.347 3.653 20 O -0.410 6.410 21 C -0.170 4.170 22 C -0.028 4.028 23 N -0.163 5.163 24 C -0.044 4.044 25 C -0.009 4.009 26 N -0.179 5.179 27 C -0.071 4.071 28 C -0.155 4.155 29 C -0.093 4.093 30 C -0.028 4.028 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.205 0.795 43 H 0.192 0.808 44 H 0.177 0.823 45 H 0.162 0.838 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.429 -13.183 13.988 23.447 hybrid contribution -1.593 1.403 -0.673 2.227 sum -15.021 -11.780 13.315 23.274 Atomic orbital electron populations 1.22211 0.92782 1.03489 1.00819 1.21331 0.95269 0.95641 0.83577 0.90636 1.22294 0.97457 1.00690 0.97120 1.20162 0.90085 0.87191 0.95630 0.92041 1.42872 1.14274 1.05100 1.76752 1.19055 0.87943 0.95946 1.34536 0.89108 1.24653 0.96024 0.97061 1.01090 1.69689 1.13476 1.22094 1.52623 0.86662 0.79808 0.83519 0.79170 1.20987 1.20403 1.21655 1.22494 1.02172 0.97970 0.96275 1.22659 0.79046 1.02301 1.00021 1.48127 1.07851 1.56215 1.19828 1.17986 0.85935 0.79370 0.82057 1.90844 1.15818 1.56863 1.77455 1.21231 0.96678 0.99881 0.99164 1.23941 0.91691 0.97072 0.90054 1.68010 1.34603 1.06247 1.07465 1.20100 0.91352 0.95549 0.97374 1.23181 0.99311 0.89063 0.89318 1.67469 1.06931 1.13740 1.29789 1.22298 0.91357 0.98883 0.94585 1.21969 1.01098 0.95836 0.96633 1.18919 0.95505 0.97971 0.96867 1.21799 0.98999 0.90905 0.91137 0.90943 0.93637 0.91523 0.90365 0.91502 0.80634 0.92981 0.92856 0.89936 0.88878 0.89286 0.79514 0.80760 0.82308 0.83846 0.82841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.60 37.15 0.28 -1.57 16 2 C 0.14 2.09 3.19 -67.61 -0.22 1.87 16 3 H 0.08 1.21 6.65 -51.93 -0.35 0.87 16 4 C -0.14 -1.96 5.07 -26.62 -0.13 -2.09 16 5 C 0.18 3.02 3.10 -67.89 -0.21 2.81 16 6 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 7 N -0.75 -15.71 4.11 -53.39 -0.22 -15.93 16 8 C -0.25 -6.35 10.41 -15.06 -0.16 -6.51 16 9 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 10 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 11 N -0.93 -28.07 13.97 55.49 0.78 -27.30 16 12 Si 0.88 21.02 27.73 -169.99 -4.71 16.31 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 C -0.15 -2.19 5.78 -26.61 -0.15 -2.34 16 17 C 0.08 1.11 4.65 -3.71 -0.02 1.09 16 18 N -0.59 -8.11 2.97 -166.33 -0.49 -8.61 16 19 C 0.56 7.62 7.31 -12.32 -0.09 7.53 16 20 O -0.53 -8.15 12.29 5.32 0.07 -8.09 16 21 C -0.16 -1.94 5.53 -104.78 -0.58 -2.52 16 22 C 0.15 1.70 8.59 -17.06 -0.15 1.56 16 23 N -0.45 -5.53 10.33 -11.28 -0.12 -5.64 16 24 C 0.08 0.90 6.62 -84.81 -0.56 0.34 16 25 C 0.16 1.66 11.25 -16.93 -0.19 1.47 16 26 N -0.47 -4.73 10.28 -13.11 -0.13 -4.87 16 27 C 0.07 0.57 11.08 -17.96 -0.20 0.38 16 28 C -0.13 -1.06 9.88 -39.38 -0.39 -1.45 16 29 C -0.09 -0.88 5.75 -106.80 -0.61 -1.49 16 30 C 0.00 -0.02 9.53 -38.48 -0.37 -0.39 16 31 H 0.07 1.07 6.70 -51.93 -0.35 0.72 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.94 6.78 -51.93 -0.35 0.58 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.36 7.57 3.93 -40.82 -0.16 7.41 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.09 1.10 3.52 -53.38 -0.19 0.91 16 41 H 0.09 1.36 7.74 -51.93 -0.40 0.96 16 42 H 0.19 2.05 5.30 -52.49 -0.28 1.77 16 43 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 44 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.15 1.36 8.01 -52.48 -0.42 0.94 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -31.43 361.22 -9.12 -40.55 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.89 Total: 9.32 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.84 Total: -1.18 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -0.19 Total: -62.34 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.07 Total: -8.09 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.43 -9.12 -40.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.490 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds