Wall clock time and date at job start Sat Apr 11 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.58574 * 2 1 4 4 C 1.53168 * 109.58891 * 239.56785 * 2 1 3 5 5 C 1.53046 * 109.32717 * 185.57086 * 4 2 1 6 6 H 1.08996 * 109.45639 * 181.38600 * 5 4 2 7 7 N 1.46496 * 109.45865 * 301.35979 * 5 4 2 8 8 C 1.36938 * 120.00010 * 205.02964 * 7 5 4 9 9 H 1.08009 * 119.99586 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00376 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00111 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00064 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47234 * 89.99804 * 12 10 8 14 14 H 1.48501 * 109.46894 * 329.99952 * 12 10 8 15 15 H 1.48499 * 109.47160 * 210.00419 * 12 10 8 16 16 C 1.53036 * 109.52550 * 61.37001 * 5 4 2 17 17 C 1.53193 * 109.31821 * 298.64021 * 16 5 4 18 18 N 1.46928 * 109.58883 * 120.28283 * 2 1 3 19 19 C 1.34778 * 120.63073 * 353.37736 * 18 2 1 20 20 O 1.21551 * 119.99601 * 357.83319 * 19 18 2 21 21 C 1.47863 * 119.99971 * 177.83235 * 19 18 2 22 22 C 1.40627 * 120.26059 * 32.95782 * 21 19 18 23 23 N 1.30861 * 121.65483 * 179.73379 * 22 21 19 24 24 C 1.33586 * 121.58410 * 0.54928 * 23 22 21 25 25 C 1.40645 * 121.62808 * 179.70238 * 24 23 22 26 26 N 1.31150 * 120.03968 * 180.02562 * 25 24 23 27 27 C 1.32498 * 122.88928 * 0.02562 * 26 25 24 28 28 C 1.36317 * 121.71133 * 359.97438 * 27 26 25 29 29 C 1.40595 * 118.65081 * 0.02562 * 28 27 26 30 30 C 1.38987 * 120.25906 * 213.23351 * 21 19 18 31 31 H 1.09002 * 109.46960 * 306.39355 * 1 2 3 32 32 H 1.08992 * 109.47508 * 66.39589 * 1 2 3 33 33 H 1.09006 * 109.47200 * 186.39703 * 1 2 3 34 34 H 1.08991 * 109.47790 * 65.62013 * 4 2 1 35 35 H 1.09002 * 109.49701 * 305.53311 * 4 2 1 36 36 H 0.97004 * 120.00535 * 25.02728 * 7 5 4 37 37 H 0.97002 * 119.99968 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.50035 * 58.59542 * 16 5 4 39 39 H 1.09003 * 109.49620 * 178.65522 * 16 5 4 40 40 H 1.08997 * 109.59177 * 174.41980 * 17 16 5 41 41 H 1.09000 * 109.58682 * 294.70735 * 17 16 5 42 42 H 1.07997 * 119.17382 * 0.02562 * 22 21 19 43 43 H 1.07995 * 119.98175 * 0.02562 * 25 24 23 44 44 H 1.07998 * 119.14237 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.67226 * 180.02562 * 28 27 26 46 46 H 1.08005 * 121.11425 * 359.95164 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7309 -1.2442 5 6 3.5675 -0.8494 -1.1692 6 1 3.9375 -1.3475 -2.0653 7 7 4.1570 0.4884 -1.0756 8 6 5.4410 0.7021 -1.5007 9 1 6.0193 -0.1158 -1.9046 10 6 5.9995 1.9698 -1.4125 11 7 7.2335 2.1753 -1.8216 12 14 4.9992 3.3846 -0.7146 13 1 5.2079 3.4616 0.7536 14 1 3.5590 3.1600 -0.9988 15 1 5.4352 4.6570 -1.3440 16 6 3.9569 -1.6656 0.0655 17 6 3.4651 -0.9453 1.3249 18 7 2.0225 -0.6980 1.1954 19 6 1.1675 -1.1035 2.1550 20 8 -0.0188 -0.8580 2.0552 21 6 1.6725 -1.8470 3.3291 22 6 2.9529 -1.5752 3.8430 23 7 3.4249 -2.2129 4.8837 24 6 2.7173 -3.1617 5.5029 25 6 3.2261 -3.8520 6.6177 26 7 2.5046 -4.7785 7.2017 27 6 1.2900 -5.1108 6.7895 28 6 0.7053 -4.5027 5.7187 29 6 1.4189 -3.4985 5.0412 30 6 0.8875 -2.8240 3.9301 31 1 -0.3633 0.6098 0.8273 32 1 -0.3634 0.4115 -0.9416 33 1 -0.3634 -1.0213 0.1145 34 1 1.7657 -0.1694 -2.1361 35 1 1.6028 -1.7269 -1.2888 36 1 3.6378 1.2230 -0.7125 37 1 7.6239 3.0611 -1.7597 38 1 3.4983 -2.6528 0.0085 39 1 5.0411 -1.7700 0.1054 40 1 3.6518 -1.5691 2.1991 41 1 3.9922 0.0026 1.4331 42 1 3.5602 -0.8178 3.3697 43 1 4.2116 -3.6190 6.9931 44 1 0.7492 -5.8836 7.3156 45 1 -0.2859 -4.7866 5.3974 46 1 -0.0982 -3.0567 3.5551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044685833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:47 Heat of formation + Delta-G solvation = 68.036756 kcal Electronic energy + Delta-G solvation = -29811.277543 eV Core-core repulsion = 25895.034156 eV Total energy + Delta-G solvation = -3916.243387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.60450 -41.53845 -39.27343 -38.81022 -36.07738 -34.92849 -34.50761 -33.78549 -32.22278 -31.53896 -31.40634 -28.60343 -26.73098 -26.16264 -25.44832 -24.83782 -23.84161 -23.11740 -21.91306 -20.26365 -19.86892 -19.69040 -18.73358 -18.24165 -17.35857 -17.06469 -16.82551 -16.57761 -16.15607 -15.99319 -15.54025 -15.47612 -15.30256 -15.26562 -14.91933 -14.55412 -14.43883 -14.21784 -14.19304 -13.84973 -13.77232 -13.47956 -13.29290 -13.05329 -12.92798 -12.61414 -12.57097 -12.10837 -12.04705 -11.98204 -11.86092 -11.70530 -11.49054 -11.07162 -10.92066 -10.72236 -10.46697 -10.13589 -9.68708 -9.53065 -9.26045 -7.98540 -5.30807 -1.05299 -0.66784 0.62626 1.36703 1.38098 1.39724 1.47155 1.73249 2.03806 2.49725 2.88496 2.93633 3.14387 3.29036 3.33537 3.44713 3.49986 3.56811 3.59727 3.74238 3.86856 3.92164 3.99980 4.13753 4.21296 4.26229 4.33575 4.41351 4.47235 4.55976 4.61216 4.63850 4.78386 4.80664 4.90142 4.91977 4.99790 5.06713 5.16465 5.20215 5.20841 5.26313 5.38935 5.46179 5.63511 5.83635 6.24878 6.29119 6.48089 6.83305 6.96996 7.12033 7.88097 8.06139 9.23182 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.003186 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.726926 B = 8785.783502 C = 9716.695983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.142 3.858 3 H 0.060 0.940 4 C -0.125 4.125 5 C 0.171 3.829 6 H 0.051 0.949 7 N -0.746 5.746 8 C -0.217 4.217 9 H 0.061 0.939 10 C -0.061 4.061 11 N -0.984 5.984 12 Si 0.941 3.059 13 H -0.279 1.279 14 H -0.254 1.254 15 H -0.302 1.302 16 C -0.141 4.141 17 C 0.088 3.912 18 N -0.589 5.589 19 C 0.564 3.436 20 O -0.548 6.548 21 C -0.178 4.178 22 C 0.139 3.861 23 N -0.470 5.470 24 C 0.062 3.938 25 C 0.152 3.848 26 N -0.483 5.483 27 C 0.067 3.933 28 C -0.124 4.124 29 C -0.097 4.097 30 C 0.012 3.988 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.363 0.637 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.189 0.811 43 H 0.185 0.815 44 H 0.192 0.808 45 H 0.178 0.822 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.169 -14.526 14.444 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.039 3.961 3 H 0.078 0.922 4 C -0.164 4.164 5 C 0.063 3.937 6 H 0.069 0.931 7 N -0.390 5.390 8 C -0.348 4.348 9 H 0.079 0.921 10 C -0.252 4.252 11 N -0.636 5.636 12 Si 0.769 3.231 13 H -0.205 1.205 14 H -0.178 1.178 15 H -0.229 1.229 16 C -0.182 4.182 17 C -0.034 4.034 18 N -0.320 5.320 19 C 0.353 3.647 20 O -0.428 6.428 21 C -0.184 4.184 22 C -0.034 4.034 23 N -0.179 5.179 24 C -0.061 4.061 25 C -0.020 4.020 26 N -0.191 5.191 27 C -0.075 4.075 28 C -0.144 4.144 29 C -0.104 4.104 30 C -0.015 4.015 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.197 0.803 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.132 0.868 41 H 0.088 0.912 42 H 0.205 0.795 43 H 0.202 0.798 44 H 0.209 0.791 45 H 0.196 0.804 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -16.554 -14.855 15.429 27.069 hybrid contribution -0.692 1.698 -1.045 2.110 sum -17.246 -13.157 14.384 26.027 Atomic orbital electron populations 1.22070 0.91760 1.03188 1.01053 1.21311 0.95956 0.94926 0.83882 0.92200 1.22187 0.94992 1.01986 0.97235 1.20397 0.91898 0.85221 0.96172 0.93099 1.42846 1.12622 1.07087 1.76441 1.19006 0.89320 0.94685 1.31788 0.92103 1.25355 0.97095 0.99904 1.02844 1.69864 1.15701 1.22386 1.55612 0.85628 0.79544 0.79576 0.78358 1.20475 1.17835 1.22896 1.22354 1.01281 0.98874 0.95642 1.22576 0.78949 1.01631 1.00229 1.48089 1.07741 1.56304 1.19890 1.18138 0.85563 0.78911 0.82108 1.90836 1.16482 1.57530 1.77948 1.21066 0.97151 1.01012 0.99208 1.23906 0.91898 0.97246 0.90334 1.67978 1.35250 1.06866 1.07813 1.20344 0.92147 0.95733 0.97880 1.23356 0.99995 0.89329 0.89326 1.67516 1.07941 1.13634 1.30058 1.22886 0.90756 0.99214 0.94690 1.22337 1.02127 0.94253 0.95708 1.19140 0.95381 0.98729 0.97110 1.22031 0.99270 0.89734 0.90456 0.92161 0.92264 0.91681 0.90133 0.89389 0.80291 0.93577 0.90498 0.91708 0.86817 0.91150 0.79505 0.79846 0.79147 0.80443 0.81001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 7.60 71.98 0.55 -2.54 16 2 C 0.14 3.84 3.19 44.96 0.14 3.99 16 3 H 0.06 1.82 6.65 -2.39 -0.02 1.81 16 4 C -0.13 -3.32 5.07 30.67 0.16 -3.16 16 5 C 0.17 5.62 3.10 45.02 0.14 5.76 16 6 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 7 N -0.75 -31.12 4.11 -322.82 -1.33 -32.44 16 8 C -0.22 -11.45 10.41 84.03 0.87 -10.58 16 9 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 10 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 11 N -0.98 -61.41 13.97 21.65 0.30 -61.10 16 12 Si 0.94 43.87 27.73 68.60 1.90 45.78 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 14 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 15 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 16 C -0.14 -4.02 5.78 30.67 0.18 -3.84 16 17 C 0.09 2.31 4.65 86.36 0.40 2.71 16 18 N -0.59 -15.28 2.97 -798.42 -2.37 -17.65 16 19 C 0.56 14.34 7.31 86.79 0.63 14.97 16 20 O -0.55 -15.71 12.29 -3.88 -0.05 -15.76 16 21 C -0.18 -3.92 5.53 -19.97 -0.11 -4.03 16 22 C 0.14 3.14 8.59 85.42 0.73 3.88 16 23 N -0.47 -11.11 10.33 -189.61 -1.96 -13.07 16 24 C 0.06 1.32 6.62 40.36 0.27 1.59 16 25 C 0.15 2.90 11.25 85.38 0.96 3.86 16 26 N -0.48 -8.72 10.28 -195.39 -2.01 -10.73 16 27 C 0.07 0.86 11.08 84.14 0.93 1.79 16 28 C -0.12 -1.50 9.88 22.40 0.22 -1.28 16 29 C -0.10 -1.74 5.75 -21.27 -0.12 -1.86 16 30 C 0.01 0.21 9.53 22.98 0.22 0.43 16 31 H 0.06 1.67 6.70 -2.39 -0.02 1.65 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.65 6.78 -2.38 -0.02 1.64 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.36 14.86 3.93 -92.71 -0.36 14.50 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.11 2.58 3.52 -3.75 -0.01 2.56 16 41 H 0.07 2.13 7.74 -2.39 -0.02 2.12 16 42 H 0.19 4.03 5.30 -2.91 -0.02 4.02 16 43 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 46 H 0.17 2.43 8.01 -2.91 -0.02 2.41 16 Total: -1.00 -69.18 361.22 1.73 -67.45 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.60 Total: 28.79 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 6.64 Total: 8.73 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -7.37 Total: -134.99 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.05 Total: -15.76 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.90 Total: 45.78 kcal Total: -69.18 1.73 -67.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.490 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds