Wall clock time and date at job start Sat Apr 11 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.70248 * 2 1 4 4 C 1.53198 * 109.58635 * 120.35626 * 2 1 3 5 5 C 1.53044 * 109.31204 * 174.42607 * 4 2 1 6 6 H 1.09001 * 109.44899 * 178.62104 * 5 4 2 7 7 N 1.46500 * 109.46301 * 58.65397 * 5 4 2 8 8 C 1.36931 * 120.00048 * 154.93133 * 7 5 4 9 9 H 1.07995 * 120.00207 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99821 * 180.02562 * 8 7 5 11 11 N 1.31623 * 120.00087 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00059 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47022 * 59.99478 * 12 10 8 14 14 H 1.48500 * 109.47373 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46939 * 299.99855 * 12 10 8 16 16 C 1.53043 * 109.53674 * 298.63582 * 5 4 2 17 17 C 1.53190 * 109.31433 * 61.36530 * 16 5 4 18 18 N 1.46929 * 108.89202 * 305.29430 * 17 16 5 19 19 C 1.34772 * 120.62893 * 233.67524 * 18 17 16 20 20 O 1.21549 * 119.99960 * 186.26119 * 19 18 17 21 21 C 1.47864 * 120.00357 * 6.26029 * 19 18 17 22 22 C 1.40635 * 120.26047 * 33.45941 * 21 19 18 23 23 N 1.30856 * 121.66425 * 179.97438 * 22 21 19 24 24 C 1.33590 * 121.58221 * 0.02857 * 23 22 21 25 25 C 1.40633 * 121.63512 * 179.97438 * 24 23 22 26 26 N 1.31148 * 120.04732 * 179.97438 * 25 24 23 27 27 C 1.32497 * 122.88623 * 0.04930 * 26 25 24 28 28 C 1.36318 * 121.71128 * 359.94658 * 27 26 25 29 29 C 1.40595 * 118.65194 * 0.02745 * 28 27 26 30 30 C 1.38994 * 120.26614 * 213.19184 * 21 19 18 31 31 H 1.08997 * 109.47694 * 292.49836 * 1 2 3 32 32 H 1.09000 * 109.47243 * 52.50304 * 1 2 3 33 33 H 1.09004 * 109.46960 * 172.50052 * 1 2 3 34 34 H 1.08990 * 109.49572 * 54.47440 * 4 2 1 35 35 H 1.08999 * 109.49661 * 294.37247 * 4 2 1 36 36 H 0.97001 * 119.99684 * 334.93581 * 7 5 4 37 37 H 0.97008 * 119.99818 * 180.02562 * 11 10 8 38 38 H 1.09007 * 109.49144 * 301.41129 * 16 5 4 39 39 H 1.08994 * 109.52395 * 181.33562 * 16 5 4 40 40 H 1.08998 * 109.58620 * 65.15389 * 17 16 5 41 41 H 1.09003 * 109.58546 * 185.43771 * 17 16 5 42 42 H 1.08002 * 119.16751 * 0.02562 * 22 21 19 43 43 H 1.08003 * 119.97470 * 359.97438 * 25 24 23 44 44 H 1.08002 * 119.14410 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.66863 * 180.02562 * 28 27 26 46 46 H 1.08001 * 121.10369 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2455 5 6 3.5675 -0.8479 1.1702 6 1 3.9376 -1.3449 2.0670 7 7 4.1570 0.4898 1.0750 8 6 5.4408 0.7041 1.5004 9 1 6.0189 -0.1131 1.9056 10 6 5.9992 1.9718 1.4107 11 7 5.2948 2.9678 0.9163 12 14 7.7508 2.2641 1.9903 13 1 8.6796 1.4069 1.2107 14 1 8.1075 3.6913 1.7880 15 1 7.8579 1.9261 3.4324 16 6 3.9569 -1.6656 -0.0635 17 6 3.4651 -0.9468 -1.3237 18 7 2.0222 -0.6997 -1.1979 19 6 1.1693 -1.1080 -2.1582 20 8 -0.0048 -0.7993 -2.0996 21 6 1.6619 -1.9315 -3.2832 22 6 2.7049 -2.8535 -3.0831 23 7 3.1616 -3.5963 -4.0588 24 6 2.6596 -3.5149 -5.2941 25 6 3.1500 -4.3123 -6.3436 26 7 2.6338 -4.2072 -7.5446 27 6 1.6496 -3.3686 -7.8338 28 6 1.1034 -2.5518 -6.8890 29 6 1.6054 -2.6087 -5.5769 30 6 1.0942 -1.8045 -4.5455 31 1 -0.3634 0.3932 0.9494 32 1 -0.3634 0.6256 -0.8153 33 1 -0.3633 -1.0189 -0.1341 34 1 1.6030 -1.7253 1.2913 35 1 1.7660 -0.1669 2.1368 36 1 3.6378 1.2238 0.7108 37 1 5.6852 3.8536 0.8533 38 1 3.4983 -2.6528 -0.0052 39 1 5.0411 -1.7700 -0.1039 40 1 3.9903 0.0021 -1.4316 41 1 3.6542 -1.5706 -2.1974 42 1 3.1392 -2.9515 -2.0992 43 1 3.9523 -5.0117 -6.1604 44 1 1.2701 -3.3314 -8.8443 45 1 0.3013 -1.8747 -7.1433 46 1 0.2889 -1.1083 -4.7276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044685839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:53 Heat of formation + Delta-G solvation = 77.258797 kcal Electronic energy + Delta-G solvation = -29699.448924 eV Core-core repulsion = 25783.605434 eV Total energy + Delta-G solvation = -3915.843490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66869 -40.40173 -38.24350 -37.54452 -34.39154 -34.04171 -33.28320 -32.00280 -31.18592 -30.74699 -29.18480 -27.21873 -25.81677 -24.90029 -24.07429 -23.51594 -22.98904 -21.96251 -20.65154 -19.27239 -18.45270 -17.71878 -17.46835 -17.26291 -16.45016 -16.03493 -15.59066 -15.14328 -15.05151 -14.67149 -14.38845 -14.27237 -14.01291 -13.93181 -13.59315 -13.52881 -13.40135 -13.02949 -12.85484 -12.63555 -12.50932 -12.10614 -12.04005 -11.53940 -11.25384 -11.12341 -10.94336 -10.86082 -10.73333 -10.54105 -10.34148 -10.19571 -10.06198 -9.87869 -9.69706 -9.52362 -9.06613 -8.97351 -8.79458 -8.31280 -7.05802 -5.84405 -3.13893 -0.22364 0.18507 1.44181 2.31751 2.90531 3.06728 3.38947 3.44239 3.44941 3.71832 3.78143 4.02752 4.12137 4.23182 4.35019 4.40064 4.52790 4.64174 4.90450 5.02949 5.12592 5.19420 5.21233 5.27406 5.37245 5.39566 5.51594 5.54921 5.61183 5.64661 5.69694 5.79033 5.90692 5.97947 6.03520 6.07307 6.18810 6.21768 6.31422 6.40159 6.47796 6.63518 6.67962 6.75090 6.93097 7.32574 7.53144 7.58892 7.63075 8.16047 8.33810 9.45439 10.01013 10.35617 11.37786 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.003043 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.865551 B = 9198.535318 C =10323.830672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.146 3.854 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.174 3.826 6 H 0.054 0.946 7 N -0.722 5.722 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.152 4.152 17 C 0.089 3.911 18 N -0.586 5.586 19 C 0.559 3.441 20 O -0.533 6.533 21 C -0.162 4.162 22 C 0.153 3.847 23 N -0.458 5.458 24 C 0.079 3.921 25 C 0.163 3.837 26 N -0.471 5.471 27 C 0.070 3.930 28 C -0.134 4.134 29 C -0.085 4.085 30 C -0.003 4.003 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.184 0.816 43 H 0.175 0.825 44 H 0.159 0.841 45 H 0.144 0.856 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 -12.227 -12.055 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 H 0.102 0.898 4 C -0.173 4.173 5 C 0.064 3.936 6 H 0.072 0.928 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.033 4.033 18 N -0.318 5.318 19 C 0.345 3.655 20 O -0.411 6.411 21 C -0.169 4.169 22 C -0.021 4.021 23 N -0.166 5.166 24 C -0.044 4.044 25 C -0.010 4.010 26 N -0.180 5.180 27 C -0.072 4.072 28 C -0.154 4.154 29 C -0.093 4.093 30 C -0.029 4.029 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.200 0.800 43 H 0.192 0.808 44 H 0.177 0.823 45 H 0.162 0.838 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.880 -13.120 -12.668 20.284 hybrid contribution 0.030 1.686 0.743 1.843 sum -8.850 -11.434 -11.924 18.741 Atomic orbital electron populations 1.22185 0.93133 1.03204 1.00876 1.21379 0.94867 0.96226 0.83099 0.89803 1.22262 0.97433 1.00340 0.97236 1.20182 0.90388 0.88157 0.94902 0.92831 1.42504 1.13863 1.04653 1.75374 1.19179 0.89799 0.94159 1.34139 0.91175 1.24728 0.98282 0.95901 1.01784 1.69642 1.36625 1.00666 1.51089 0.86299 0.84689 0.76862 0.78490 1.21265 1.21772 1.21290 1.22571 1.01860 0.97898 0.97005 1.22382 0.79139 1.02922 0.98901 1.48164 1.07697 1.56117 1.19827 1.17957 0.85817 0.79923 0.81756 1.90827 1.16787 1.57168 1.76361 1.21280 0.99317 1.00545 0.95757 1.23724 0.90280 0.88823 0.99223 1.67982 1.27239 1.22303 0.99096 1.20079 0.94422 0.96440 0.93458 1.23149 0.96923 0.95190 0.85730 1.67458 1.09929 1.19304 1.21275 1.22288 0.92794 0.92072 1.00067 1.21978 1.00961 1.00514 0.91976 1.18925 0.97424 0.97631 0.95276 1.21829 0.96021 0.94924 0.90153 0.93554 0.90877 0.91977 0.91930 0.90439 0.78145 0.93413 0.93035 0.90282 0.89183 0.89816 0.79986 0.80841 0.82328 0.83827 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.62 37.15 0.28 -1.72 16 2 C 0.15 2.29 3.20 -67.45 -0.22 2.07 16 3 H 0.08 1.51 6.64 -51.93 -0.34 1.16 16 4 C -0.13 -2.03 5.07 -26.61 -0.13 -2.17 16 5 C 0.17 3.04 3.10 -67.89 -0.21 2.83 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 N -0.72 -16.16 4.31 -53.38 -0.23 -16.39 16 8 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 11 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16 12 Si 0.91 21.48 29.55 -169.99 -5.02 16.45 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 C -0.15 -2.28 5.44 -26.61 -0.14 -2.42 16 17 C 0.09 1.31 5.26 -3.71 -0.02 1.29 16 18 N -0.59 -8.71 2.98 -166.11 -0.50 -9.21 16 19 C 0.56 8.18 7.21 -12.32 -0.09 8.09 16 20 O -0.53 -8.73 12.44 5.32 0.07 -8.66 16 21 C -0.16 -2.06 5.45 -104.77 -0.57 -2.63 16 22 C 0.15 1.85 8.54 -17.06 -0.15 1.70 16 23 N -0.46 -5.68 10.33 -10.65 -0.11 -5.79 16 24 C 0.08 0.94 6.62 -84.81 -0.56 0.37 16 25 C 0.16 1.70 11.25 -16.94 -0.19 1.51 16 26 N -0.47 -4.92 10.28 -13.11 -0.13 -5.06 16 27 C 0.07 0.60 11.08 -17.96 -0.20 0.40 16 28 C -0.13 -1.14 9.88 -39.38 -0.39 -1.53 16 29 C -0.09 -0.94 5.75 -106.80 -0.61 -1.55 16 30 C 0.00 -0.03 9.53 -38.48 -0.37 -0.40 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.16 6.69 -51.93 -0.35 0.81 16 33 H 0.06 0.94 6.83 -51.93 -0.35 0.58 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.38 9.24 6.06 -40.82 -0.25 8.99 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.05 0.65 7.61 -51.93 -0.40 0.25 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.62 7.74 -51.93 -0.40 1.22 16 41 H 0.08 1.08 3.52 -51.93 -0.18 0.90 16 42 H 0.18 2.03 4.96 -52.49 -0.26 1.77 16 43 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 44 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.15 1.52 8.01 -52.49 -0.42 1.10 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -30.26 363.71 -9.42 -39.68 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.88 Total: 10.40 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -3.81 Total: -0.87 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.25 Total: -62.49 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.66 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.26 -9.42 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.935 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds