Wall clock time and date at job start Sat Apr 11 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.70248 * 2 1 4 4 C 1.53198 * 109.58635 * 120.35626 * 2 1 3 5 5 C 1.53044 * 109.31204 * 174.42607 * 4 2 1 6 6 H 1.09001 * 109.44899 * 178.62104 * 5 4 2 7 7 N 1.46500 * 109.46301 * 58.65397 * 5 4 2 8 8 C 1.36931 * 120.00048 * 154.93133 * 7 5 4 9 9 H 1.07995 * 120.00207 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99821 * 180.02562 * 8 7 5 11 11 N 1.31623 * 120.00087 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00059 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47022 * 59.99478 * 12 10 8 14 14 H 1.48500 * 109.47373 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46939 * 299.99855 * 12 10 8 16 16 C 1.53043 * 109.53674 * 298.63582 * 5 4 2 17 17 C 1.53190 * 109.31433 * 61.36530 * 16 5 4 18 18 N 1.46929 * 108.89202 * 305.29430 * 17 16 5 19 19 C 1.34772 * 120.62893 * 233.67524 * 18 17 16 20 20 O 1.21549 * 119.99960 * 186.26119 * 19 18 17 21 21 C 1.47864 * 120.00357 * 6.26029 * 19 18 17 22 22 C 1.40635 * 120.26047 * 33.45941 * 21 19 18 23 23 N 1.30856 * 121.66425 * 179.97438 * 22 21 19 24 24 C 1.33590 * 121.58221 * 0.02857 * 23 22 21 25 25 C 1.40633 * 121.63512 * 179.97438 * 24 23 22 26 26 N 1.31148 * 120.04732 * 179.97438 * 25 24 23 27 27 C 1.32497 * 122.88623 * 0.04930 * 26 25 24 28 28 C 1.36318 * 121.71128 * 359.94658 * 27 26 25 29 29 C 1.40595 * 118.65194 * 0.02745 * 28 27 26 30 30 C 1.38994 * 120.26614 * 213.19184 * 21 19 18 31 31 H 1.08997 * 109.47694 * 292.49836 * 1 2 3 32 32 H 1.09000 * 109.47243 * 52.50304 * 1 2 3 33 33 H 1.09004 * 109.46960 * 172.50052 * 1 2 3 34 34 H 1.08990 * 109.49572 * 54.47440 * 4 2 1 35 35 H 1.08999 * 109.49661 * 294.37247 * 4 2 1 36 36 H 0.97001 * 119.99684 * 334.93581 * 7 5 4 37 37 H 0.97008 * 119.99818 * 180.02562 * 11 10 8 38 38 H 1.09007 * 109.49144 * 301.41129 * 16 5 4 39 39 H 1.08994 * 109.52395 * 181.33562 * 16 5 4 40 40 H 1.08998 * 109.58620 * 65.15389 * 17 16 5 41 41 H 1.09003 * 109.58546 * 185.43771 * 17 16 5 42 42 H 1.08002 * 119.16751 * 0.02562 * 22 21 19 43 43 H 1.08003 * 119.97470 * 359.97438 * 25 24 23 44 44 H 1.08002 * 119.14410 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.66863 * 180.02562 * 28 27 26 46 46 H 1.08001 * 121.10369 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2455 5 6 3.5675 -0.8479 1.1702 6 1 3.9376 -1.3449 2.0670 7 7 4.1570 0.4898 1.0750 8 6 5.4408 0.7041 1.5004 9 1 6.0189 -0.1131 1.9056 10 6 5.9992 1.9718 1.4107 11 7 5.2948 2.9678 0.9163 12 14 7.7508 2.2641 1.9903 13 1 8.6796 1.4069 1.2107 14 1 8.1075 3.6913 1.7880 15 1 7.8579 1.9261 3.4324 16 6 3.9569 -1.6656 -0.0635 17 6 3.4651 -0.9468 -1.3237 18 7 2.0222 -0.6997 -1.1979 19 6 1.1693 -1.1080 -2.1582 20 8 -0.0048 -0.7993 -2.0996 21 6 1.6619 -1.9315 -3.2832 22 6 2.7049 -2.8535 -3.0831 23 7 3.1616 -3.5963 -4.0588 24 6 2.6596 -3.5149 -5.2941 25 6 3.1500 -4.3123 -6.3436 26 7 2.6338 -4.2072 -7.5446 27 6 1.6496 -3.3686 -7.8338 28 6 1.1034 -2.5518 -6.8890 29 6 1.6054 -2.6087 -5.5769 30 6 1.0942 -1.8045 -4.5455 31 1 -0.3634 0.3932 0.9494 32 1 -0.3634 0.6256 -0.8153 33 1 -0.3633 -1.0189 -0.1341 34 1 1.6030 -1.7253 1.2913 35 1 1.7660 -0.1669 2.1368 36 1 3.6378 1.2238 0.7108 37 1 5.6852 3.8536 0.8533 38 1 3.4983 -2.6528 -0.0052 39 1 5.0411 -1.7700 -0.1039 40 1 3.9903 0.0021 -1.4316 41 1 3.6542 -1.5706 -2.1974 42 1 3.1392 -2.9515 -2.0992 43 1 3.9523 -5.0117 -6.1604 44 1 1.2701 -3.3314 -8.8443 45 1 0.3013 -1.8747 -7.1433 46 1 0.2889 -1.1083 -4.7276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044685839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:52 Heat of formation + Delta-G solvation = 58.786916 kcal Electronic energy + Delta-G solvation = -29700.249925 eV Core-core repulsion = 25783.605434 eV Total energy + Delta-G solvation = -3916.644490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.57585 -41.48399 -39.19186 -38.76949 -35.95229 -34.91623 -34.43759 -33.67736 -32.17720 -31.52537 -30.85165 -28.51658 -26.73500 -25.91983 -25.59875 -24.99607 -23.80755 -23.11129 -21.82617 -20.37927 -19.52538 -19.19992 -18.62052 -18.41232 -17.43348 -17.19572 -16.69316 -16.46025 -15.97898 -15.91171 -15.65720 -15.40577 -15.31005 -15.07960 -14.93445 -14.73955 -14.33897 -14.24753 -13.96374 -13.71879 -13.50525 -13.41114 -13.24827 -12.94589 -12.78563 -12.65384 -12.47370 -12.17191 -12.02691 -11.98499 -11.87194 -11.59884 -11.40992 -11.07631 -10.89087 -10.72387 -10.44578 -10.16425 -9.60790 -9.53702 -8.94577 -7.89384 -5.16178 -1.05054 -0.66155 0.62952 1.36745 1.50496 1.51422 1.57220 1.77292 2.06071 2.59857 2.89774 2.94526 3.16333 3.29344 3.44011 3.45409 3.51476 3.57727 3.78272 3.88590 3.90535 3.99640 4.07576 4.15162 4.24565 4.33650 4.36278 4.47432 4.48251 4.58998 4.65828 4.72747 4.79502 4.83465 4.92592 4.93802 5.05074 5.13099 5.15809 5.24286 5.26992 5.35179 5.41730 5.46526 5.59362 5.67906 6.32662 6.34723 6.47760 6.83251 6.99153 7.40040 8.16547 8.38803 9.33705 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.003043 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.865551 B = 9198.535318 C =10323.830672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.147 3.853 3 H 0.053 0.947 4 C -0.123 4.123 5 C 0.166 3.834 6 H 0.053 0.947 7 N -0.731 5.731 8 C -0.229 4.229 9 H 0.078 0.922 10 C -0.075 4.075 11 N -0.970 5.970 12 Si 0.964 3.036 13 H -0.279 1.279 14 H -0.303 1.303 15 H -0.281 1.281 16 C -0.143 4.143 17 C 0.098 3.902 18 N -0.587 5.587 19 C 0.562 3.438 20 O -0.552 6.552 21 C -0.179 4.179 22 C 0.149 3.851 23 N -0.467 5.467 24 C 0.062 3.938 25 C 0.155 3.845 26 N -0.482 5.482 27 C 0.068 3.932 28 C -0.127 4.127 29 C -0.097 4.097 30 C 0.006 3.994 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.373 0.627 37 H 0.247 0.753 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.107 0.893 42 H 0.190 0.810 43 H 0.188 0.812 44 H 0.192 0.808 45 H 0.175 0.825 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.977 -14.206 -13.245 21.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.045 3.955 3 H 0.071 0.929 4 C -0.161 4.161 5 C 0.058 3.942 6 H 0.071 0.929 7 N -0.372 5.372 8 C -0.361 4.361 9 H 0.096 0.904 10 C -0.267 4.267 11 N -0.621 5.621 12 Si 0.794 3.206 13 H -0.205 1.205 14 H -0.230 1.230 15 H -0.207 1.207 16 C -0.184 4.184 17 C -0.024 4.024 18 N -0.319 5.319 19 C 0.350 3.650 20 O -0.432 6.432 21 C -0.186 4.186 22 C -0.025 4.025 23 N -0.176 5.176 24 C -0.061 4.061 25 C -0.018 4.018 26 N -0.191 5.191 27 C -0.074 4.074 28 C -0.147 4.147 29 C -0.104 4.104 30 C -0.021 4.021 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.206 0.794 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.124 0.876 42 H 0.207 0.793 43 H 0.205 0.795 44 H 0.208 0.792 45 H 0.193 0.807 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.502 -15.171 -13.855 22.636 hybrid contribution 0.130 2.206 0.982 2.418 sum -9.372 -12.965 -12.873 20.534 Atomic orbital electron populations 1.22036 0.92113 1.02895 1.01014 1.21262 0.95491 0.94904 0.83851 0.92864 1.22154 0.95671 1.01580 0.96741 1.20447 0.91741 0.86076 0.95982 0.92871 1.42672 1.13011 1.06428 1.75093 1.19567 0.90865 0.93964 1.31702 0.90428 1.25421 1.01675 0.96141 1.03440 1.69801 1.38019 1.00657 1.53645 0.85347 0.81054 0.75951 0.78213 1.20527 1.22957 1.20715 1.22432 1.01576 0.98972 0.95415 1.22244 0.78828 1.01361 0.99958 1.48127 1.07680 1.56179 1.19869 1.18179 0.85432 0.79566 0.81777 1.90816 1.17541 1.58024 1.76790 1.21114 1.00553 1.01282 0.95613 1.23742 0.90321 0.88898 0.99518 1.67970 1.27537 1.22543 0.99506 1.20349 0.95041 0.97154 0.93554 1.23383 0.97436 0.95442 0.85532 1.67518 1.10543 1.19882 1.21170 1.22866 0.91909 0.91097 1.01552 1.22325 1.01176 1.00532 0.90661 1.19138 0.97486 0.97492 0.96312 1.22036 0.95701 0.94609 0.89747 0.92284 0.92282 0.91947 0.89357 0.90806 0.79422 0.94388 0.89616 0.91146 0.92951 0.87585 0.79334 0.79504 0.79156 0.80735 0.81498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 7.62 71.98 0.55 -3.00 16 2 C 0.15 4.61 3.20 44.92 0.14 4.75 16 3 H 0.05 2.00 6.64 -2.38 -0.02 1.99 16 4 C -0.12 -3.59 5.07 30.68 0.16 -3.44 16 5 C 0.17 5.68 3.10 45.02 0.14 5.82 16 6 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 7 N -0.73 -33.20 4.31 -322.81 -1.39 -34.60 16 8 C -0.23 -11.76 9.93 84.03 0.83 -10.93 16 9 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 10 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 11 N -0.97 -57.47 13.06 21.65 0.28 -57.18 16 12 Si 0.96 44.77 29.55 68.60 2.03 46.79 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 C -0.14 -4.10 5.44 30.67 0.17 -3.94 16 17 C 0.10 2.89 5.26 86.36 0.45 3.34 16 18 N -0.59 -17.26 2.98 -797.73 -2.38 -19.64 16 19 C 0.56 16.05 7.21 86.79 0.63 16.67 16 20 O -0.55 -17.69 12.44 -3.87 -0.05 -17.74 16 21 C -0.18 -4.35 5.45 -19.96 -0.11 -4.46 16 22 C 0.15 3.42 8.54 85.42 0.73 4.15 16 23 N -0.47 -11.04 10.33 -187.60 -1.94 -12.98 16 24 C 0.06 1.37 6.62 40.36 0.27 1.64 16 25 C 0.15 2.98 11.25 85.38 0.96 3.94 16 26 N -0.48 -9.03 10.28 -195.39 -2.01 -11.04 16 27 C 0.07 0.96 11.08 84.14 0.93 1.90 16 28 C -0.13 -1.78 9.88 22.40 0.22 -1.56 16 29 C -0.10 -1.94 5.75 -21.27 -0.12 -2.06 16 30 C 0.01 0.12 9.53 22.98 0.22 0.34 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.87 6.69 -2.39 -0.02 1.85 16 33 H 0.06 1.80 6.83 -2.39 -0.02 1.78 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.37 18.60 6.06 -92.71 -0.56 18.04 16 37 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 38 H 0.09 1.91 7.61 -2.38 -0.02 1.89 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 1.95 7.74 -2.39 -0.02 1.94 16 41 H 0.11 2.67 3.52 -2.39 -0.01 2.66 16 42 H 0.19 3.89 4.96 -2.91 -0.01 3.88 16 43 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 44 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 46 H 0.17 2.98 8.01 -2.91 -0.02 2.95 16 Total: -1.00 -66.22 363.71 1.64 -64.58 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.47 Total: 32.28 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.63 Total: 9.52 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -7.43 Total: -135.43 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.05 Total: -17.74 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -66.22 1.64 -64.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.363 kcal (2) G-P(sol) polarization free energy of solvation -66.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds