Wall clock time and date at job start Sat Apr 11 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.58375 * 2 1 4 4 C 1.53188 * 109.70221 * 120.35258 * 2 1 3 5 5 C 1.53040 * 109.31445 * 174.49354 * 4 2 1 6 6 H 1.09004 * 109.45734 * 58.66019 * 5 4 2 7 7 N 1.46505 * 109.46236 * 178.62933 * 5 4 2 8 8 C 1.36937 * 119.99898 * 204.99775 * 7 5 4 9 9 H 1.07998 * 120.00493 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99737 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99689 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99994 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.46946 * 89.99784 * 12 10 8 14 14 H 1.48499 * 109.46978 * 209.99801 * 12 10 8 15 15 H 1.48495 * 109.46938 * 329.99478 * 12 10 8 16 16 C 1.53037 * 109.53901 * 298.63771 * 5 4 2 17 17 C 1.52765 * 109.38321 * 61.23952 * 16 5 4 18 18 N 1.46921 * 109.58981 * 239.71583 * 2 1 3 19 19 C 1.34778 * 120.63170 * 6.43981 * 18 2 1 20 20 O 1.21551 * 119.99722 * 3.48340 * 19 18 2 21 21 C 1.47862 * 119.99925 * 183.48307 * 19 18 2 22 22 C 1.40635 * 120.26059 * 325.68250 * 21 19 18 23 23 N 1.30854 * 121.65029 * 179.97438 * 22 21 19 24 24 C 1.33584 * 121.59060 * 0.02562 * 23 22 21 25 25 C 1.40637 * 121.62740 * 180.02562 * 24 23 22 26 26 N 1.31153 * 120.03948 * 179.97438 * 25 24 23 27 27 C 1.32495 * 122.89067 * 0.02562 * 26 25 24 28 28 C 1.36313 * 121.70982 * 359.97438 * 27 26 25 29 29 C 1.40602 * 118.65217 * 0.02562 * 28 27 26 30 30 C 1.38984 * 120.25883 * 145.73128 * 21 19 18 31 31 H 1.08997 * 109.47068 * 173.41003 * 1 2 3 32 32 H 1.09001 * 109.47257 * 293.41123 * 1 2 3 33 33 H 1.09006 * 109.46918 * 53.41565 * 1 2 3 34 34 H 1.09000 * 109.50396 * 294.44532 * 4 2 1 35 35 H 1.09008 * 109.49845 * 54.51103 * 4 2 1 36 36 H 0.96996 * 119.99893 * 25.00046 * 7 5 4 37 37 H 0.97005 * 119.99624 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.49707 * 181.31332 * 16 5 4 39 39 H 1.08992 * 109.50295 * 301.41151 * 16 5 4 40 40 H 1.09000 * 109.51078 * 185.70571 * 17 16 5 41 41 H 1.09003 * 109.43034 * 65.42128 * 17 16 5 42 42 H 1.07995 * 119.17101 * 0.28143 * 22 21 19 43 43 H 1.08001 * 119.98614 * 359.97438 * 25 24 23 44 44 H 1.07997 * 119.14291 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.67418 * 180.02562 * 28 27 26 46 46 H 1.08009 * 121.11240 * 359.94792 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0464 -0.7288 1.2445 5 6 3.5705 -0.8443 1.1675 6 1 4.0070 0.1520 1.0966 7 7 4.0710 -1.5118 2.3718 8 6 5.3555 -1.2925 2.7925 9 1 5.9996 -0.6271 2.2368 10 6 5.8295 -1.9246 3.9339 11 7 7.0640 -1.7134 4.3385 12 14 4.7152 -3.0749 4.8955 13 1 4.8595 -4.4568 4.3712 14 1 5.0958 -3.0476 6.3306 15 1 3.3046 -2.6346 4.7490 16 6 3.9602 -1.6607 -0.0669 17 6 3.4649 -0.9473 -1.3236 18 7 2.0226 -0.6980 -1.1953 19 6 1.1671 -1.1068 -2.1532 20 8 -0.0162 -0.8436 -2.0639 21 6 1.6681 -1.8754 -3.3127 22 6 2.9438 -1.6096 -3.8415 23 7 3.4143 -2.2734 -4.8664 24 6 2.7054 -3.2365 -5.4615 25 6 3.2104 -3.9508 -6.5627 26 7 2.4876 -4.8908 -7.1230 27 6 1.2748 -5.2146 -6.6992 28 6 0.6937 -4.5835 -5.6399 29 6 1.4088 -3.5636 -4.9878 30 6 0.8815 -2.8657 -3.8893 31 1 -0.3633 -1.0208 -0.1179 32 1 -0.3634 0.4083 0.9431 33 1 -0.3633 0.6125 -0.8252 34 1 1.7688 -0.1672 2.1365 35 1 1.6075 -1.7255 1.2909 36 1 3.4924 -2.1091 2.8711 37 1 7.3953 -2.1554 5.1359 38 1 5.0447 -1.7623 -0.1083 39 1 3.5038 -2.6487 -0.0086 40 1 3.6511 -1.5745 -2.1955 41 1 3.9913 0.0008 -1.4337 42 1 3.5524 -0.8416 -3.3873 43 1 4.1941 -3.7251 -6.9472 44 1 0.7325 -5.9990 -7.2063 45 1 -0.2959 -4.8613 -5.3082 46 1 -0.1021 -3.0917 -3.5045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044685843.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:56 Heat of formation + Delta-G solvation = 84.153905 kcal Electronic energy + Delta-G solvation = -29289.265834 eV Core-core repulsion = 25373.721339 eV Total energy + Delta-G solvation = -3915.544495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80354 -40.58233 -38.36080 -37.63712 -34.85775 -34.16796 -33.51130 -32.05634 -31.36448 -30.85330 -29.89723 -27.40247 -25.94812 -25.18089 -24.27261 -23.19092 -22.69451 -22.08980 -20.54312 -19.82192 -19.05114 -17.99023 -17.66974 -17.45707 -16.57688 -16.05274 -15.74263 -15.47052 -15.00118 -14.87711 -14.66981 -14.49560 -14.24638 -13.95691 -13.69610 -13.45067 -13.41042 -13.17535 -13.00285 -12.82450 -12.62650 -12.34274 -12.15625 -11.99105 -11.50348 -11.25278 -11.09849 -11.01168 -10.96508 -10.60311 -10.39832 -10.28223 -10.05727 -9.95838 -9.67889 -9.66236 -9.21508 -9.00679 -8.88672 -8.65643 -7.35927 -5.84039 -3.20367 -0.33118 0.07659 1.33640 2.19110 2.63371 2.90641 3.32153 3.35271 3.40747 3.61043 3.66087 3.91043 4.01588 4.08566 4.23727 4.25079 4.50680 4.52718 4.78362 4.80906 4.87068 4.97720 5.06266 5.11315 5.13207 5.26383 5.28600 5.39254 5.43574 5.48215 5.58075 5.61034 5.69430 5.80449 5.85941 5.92225 5.96670 6.08618 6.14846 6.20129 6.26879 6.32135 6.54505 6.68724 6.83854 7.20900 7.24990 7.50067 7.90829 7.93551 8.34895 9.12633 9.85432 10.04667 11.34030 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.002854 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.010243 B = 9807.897541 C =10825.708859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.078 0.922 4 C -0.139 4.139 5 C 0.183 3.817 6 H 0.058 0.942 7 N -0.747 5.747 8 C -0.246 4.246 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.932 5.932 12 Si 0.883 3.117 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.152 4.152 17 C 0.077 3.923 18 N -0.591 5.591 19 C 0.562 3.438 20 O -0.528 6.528 21 C -0.165 4.165 22 C 0.145 3.855 23 N -0.455 5.455 24 C 0.080 3.920 25 C 0.164 3.836 26 N -0.470 5.470 27 C 0.073 3.927 28 C -0.135 4.135 29 C -0.085 4.085 30 C -0.001 4.001 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.187 0.813 43 H 0.176 0.824 44 H 0.160 0.840 45 H 0.144 0.856 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 -1.584 -20.463 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.096 0.904 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.376 4.376 9 H 0.109 0.891 10 C -0.190 4.190 11 N -0.579 5.579 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.193 4.193 17 C -0.046 4.046 18 N -0.324 5.324 19 C 0.349 3.651 20 O -0.406 6.406 21 C -0.172 4.172 22 C -0.028 4.028 23 N -0.164 5.164 24 C -0.044 4.044 25 C -0.009 4.009 26 N -0.179 5.179 27 C -0.070 4.070 28 C -0.155 4.155 29 C -0.092 4.092 30 C -0.027 4.027 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.203 0.797 43 H 0.193 0.807 44 H 0.177 0.823 45 H 0.162 0.838 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.109 -1.787 -21.479 25.227 hybrid contribution -1.690 -0.740 1.998 2.720 sum -14.799 -2.528 -19.481 24.595 Atomic orbital electron populations 1.22202 0.92691 1.03608 1.00887 1.21363 0.95524 0.95350 0.83202 0.90422 1.22354 0.97591 1.01004 0.96887 1.20145 0.90669 0.95449 0.86379 0.92374 1.42785 1.13146 1.54955 1.28025 1.19054 0.87456 1.23508 1.07559 0.89109 1.24675 0.96079 1.00061 0.98171 1.69698 1.15024 1.46988 1.26228 0.86569 0.80492 0.81576 0.79981 1.21139 1.21712 1.20331 1.22581 1.02431 0.99787 0.94459 1.22667 0.79442 1.01534 1.00956 1.48141 1.07670 1.56534 1.20019 1.17981 0.85860 0.79347 0.81945 1.90852 1.16018 1.56723 1.77052 1.21212 0.96804 0.99832 0.99305 1.23826 0.91614 0.97236 0.90121 1.67973 1.34407 1.05856 1.08122 1.20075 0.91340 0.95512 0.97425 1.23180 0.99280 0.88881 0.89542 1.67470 1.06851 1.14101 1.29432 1.22310 0.91353 0.98874 0.94459 1.21983 1.01154 0.95595 0.96785 1.18920 0.95522 0.97809 0.96922 1.21810 0.98986 0.90786 0.91134 0.91619 0.93487 0.90815 0.90284 0.91876 0.80638 0.92993 0.89765 0.92297 0.88501 0.90192 0.79695 0.80748 0.82250 0.83790 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 7.61 37.16 0.28 -1.40 16 2 C 0.15 1.84 3.49 -67.61 -0.24 1.61 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.14 -2.01 4.85 -26.61 -0.13 -2.14 16 5 C 0.18 3.14 2.73 -67.89 -0.19 2.96 16 6 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 7 N -0.75 -16.55 4.92 -53.38 -0.26 -16.82 16 8 C -0.25 -6.58 10.41 -15.06 -0.16 -6.73 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 11 N -0.93 -28.52 13.97 55.49 0.78 -27.75 16 12 Si 0.88 21.58 27.74 -169.99 -4.71 16.87 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 16 C -0.15 -2.27 5.64 -26.83 -0.15 -2.42 16 17 C 0.08 0.86 4.93 -3.93 -0.02 0.84 16 18 N -0.59 -7.08 2.98 -166.58 -0.50 -7.57 16 19 C 0.56 6.94 7.28 -12.32 -0.09 6.85 16 20 O -0.53 -7.55 12.34 5.32 0.07 -7.48 16 21 C -0.17 -1.79 5.52 -104.78 -0.58 -2.37 16 22 C 0.15 1.48 8.59 -17.06 -0.15 1.33 16 23 N -0.46 -5.01 10.33 -11.05 -0.11 -5.12 16 24 C 0.08 0.85 6.62 -84.81 -0.56 0.29 16 25 C 0.16 1.57 11.25 -16.94 -0.19 1.38 16 26 N -0.47 -4.58 10.28 -13.11 -0.13 -4.71 16 27 C 0.07 0.57 11.08 -17.96 -0.20 0.37 16 28 C -0.13 -1.03 9.88 -39.38 -0.39 -1.42 16 29 C -0.08 -0.83 5.75 -106.80 -0.61 -1.45 16 30 C 0.00 -0.01 9.53 -38.48 -0.37 -0.37 16 31 H 0.06 0.90 6.79 -51.93 -0.35 0.54 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.96 6.69 -51.93 -0.35 0.61 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 36 H 0.36 8.02 5.66 -40.82 -0.23 7.79 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.97 3.51 -52.85 -0.19 0.78 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.19 1.54 5.36 -52.49 -0.28 1.26 16 43 H 0.18 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 46 H 0.15 1.31 8.03 -52.48 -0.42 0.89 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -32.74 365.61 -9.26 -41.99 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.06 Total: 7.69 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -3.83 Total: -2.61 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.23 Total: -61.96 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.07 Total: -7.48 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.74 -9.26 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685843.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.148 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds