Wall clock time and date at job start Sat Apr 11 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.58375 * 2 1 4 4 C 1.53188 * 109.70221 * 120.35258 * 2 1 3 5 5 C 1.53040 * 109.31445 * 174.49354 * 4 2 1 6 6 H 1.09004 * 109.45734 * 58.66019 * 5 4 2 7 7 N 1.46505 * 109.46236 * 178.62933 * 5 4 2 8 8 C 1.36937 * 119.99898 * 204.99775 * 7 5 4 9 9 H 1.07998 * 120.00493 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99737 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99689 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99994 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.46946 * 89.99784 * 12 10 8 14 14 H 1.48499 * 109.46978 * 209.99801 * 12 10 8 15 15 H 1.48495 * 109.46938 * 329.99478 * 12 10 8 16 16 C 1.53037 * 109.53901 * 298.63771 * 5 4 2 17 17 C 1.52765 * 109.38321 * 61.23952 * 16 5 4 18 18 N 1.46921 * 109.58981 * 239.71583 * 2 1 3 19 19 C 1.34778 * 120.63170 * 6.43981 * 18 2 1 20 20 O 1.21551 * 119.99722 * 3.48340 * 19 18 2 21 21 C 1.47862 * 119.99925 * 183.48307 * 19 18 2 22 22 C 1.40635 * 120.26059 * 325.68250 * 21 19 18 23 23 N 1.30854 * 121.65029 * 179.97438 * 22 21 19 24 24 C 1.33584 * 121.59060 * 0.02562 * 23 22 21 25 25 C 1.40637 * 121.62740 * 180.02562 * 24 23 22 26 26 N 1.31153 * 120.03948 * 179.97438 * 25 24 23 27 27 C 1.32495 * 122.89067 * 0.02562 * 26 25 24 28 28 C 1.36313 * 121.70982 * 359.97438 * 27 26 25 29 29 C 1.40602 * 118.65217 * 0.02562 * 28 27 26 30 30 C 1.38984 * 120.25883 * 145.73128 * 21 19 18 31 31 H 1.08997 * 109.47068 * 173.41003 * 1 2 3 32 32 H 1.09001 * 109.47257 * 293.41123 * 1 2 3 33 33 H 1.09006 * 109.46918 * 53.41565 * 1 2 3 34 34 H 1.09000 * 109.50396 * 294.44532 * 4 2 1 35 35 H 1.09008 * 109.49845 * 54.51103 * 4 2 1 36 36 H 0.96996 * 119.99893 * 25.00046 * 7 5 4 37 37 H 0.97005 * 119.99624 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.49707 * 181.31332 * 16 5 4 39 39 H 1.08992 * 109.50295 * 301.41151 * 16 5 4 40 40 H 1.09000 * 109.51078 * 185.70571 * 17 16 5 41 41 H 1.09003 * 109.43034 * 65.42128 * 17 16 5 42 42 H 1.07995 * 119.17101 * 0.28143 * 22 21 19 43 43 H 1.08001 * 119.98614 * 359.97438 * 25 24 23 44 44 H 1.07997 * 119.14291 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.67418 * 180.02562 * 28 27 26 46 46 H 1.08009 * 121.11240 * 359.94792 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0464 -0.7288 1.2445 5 6 3.5705 -0.8443 1.1675 6 1 4.0070 0.1520 1.0966 7 7 4.0710 -1.5118 2.3718 8 6 5.3555 -1.2925 2.7925 9 1 5.9996 -0.6271 2.2368 10 6 5.8295 -1.9246 3.9339 11 7 7.0640 -1.7134 4.3385 12 14 4.7152 -3.0749 4.8955 13 1 4.8595 -4.4568 4.3712 14 1 5.0958 -3.0476 6.3306 15 1 3.3046 -2.6346 4.7490 16 6 3.9602 -1.6607 -0.0669 17 6 3.4649 -0.9473 -1.3236 18 7 2.0226 -0.6980 -1.1953 19 6 1.1671 -1.1068 -2.1532 20 8 -0.0162 -0.8436 -2.0639 21 6 1.6681 -1.8754 -3.3127 22 6 2.9438 -1.6096 -3.8415 23 7 3.4143 -2.2734 -4.8664 24 6 2.7054 -3.2365 -5.4615 25 6 3.2104 -3.9508 -6.5627 26 7 2.4876 -4.8908 -7.1230 27 6 1.2748 -5.2146 -6.6992 28 6 0.6937 -4.5835 -5.6399 29 6 1.4088 -3.5636 -4.9878 30 6 0.8815 -2.8657 -3.8893 31 1 -0.3633 -1.0208 -0.1179 32 1 -0.3634 0.4083 0.9431 33 1 -0.3633 0.6125 -0.8252 34 1 1.7688 -0.1672 2.1365 35 1 1.6075 -1.7255 1.2909 36 1 3.4924 -2.1091 2.8711 37 1 7.3953 -2.1554 5.1359 38 1 5.0447 -1.7623 -0.1083 39 1 3.5038 -2.6487 -0.0086 40 1 3.6511 -1.5745 -2.1955 41 1 3.9913 0.0008 -1.4337 42 1 3.5524 -0.8416 -3.3873 43 1 4.1941 -3.7251 -6.9472 44 1 0.7325 -5.9990 -7.2063 45 1 -0.2959 -4.8613 -5.3082 46 1 -0.1021 -3.0917 -3.5045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044685843.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:55 Heat of formation + Delta-G solvation = 62.724246 kcal Electronic energy + Delta-G solvation = -29290.195094 eV Core-core repulsion = 25373.721339 eV Total energy + Delta-G solvation = -3916.473755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.58303 -41.49109 -39.18454 -38.75022 -36.37768 -34.92118 -34.49963 -33.82530 -32.26436 -31.55591 -31.45116 -28.57017 -26.73671 -26.15558 -25.58278 -24.28683 -23.74336 -23.08416 -21.83998 -20.93237 -19.89614 -19.53122 -18.73169 -18.28189 -17.37107 -17.03595 -16.75816 -16.66628 -16.16815 -15.94012 -15.74865 -15.44133 -15.29322 -15.17201 -14.73380 -14.65106 -14.39807 -14.33511 -14.07562 -13.85474 -13.75367 -13.45338 -13.27434 -13.11453 -12.98494 -12.62535 -12.57864 -12.10727 -12.05087 -12.02442 -11.88675 -11.77789 -11.40904 -11.08346 -10.92588 -10.72978 -10.46386 -10.14730 -9.71322 -9.53655 -9.29901 -8.01083 -5.33904 -1.04884 -0.65239 0.62692 1.37470 1.37779 1.39600 1.47137 1.71784 2.06066 2.48676 2.89616 2.94075 3.14673 3.29340 3.30626 3.44520 3.47217 3.52477 3.57490 3.74276 3.85673 3.95795 4.03798 4.15077 4.20097 4.30244 4.34402 4.46465 4.52195 4.56572 4.59089 4.62912 4.69528 4.78580 4.82685 4.92055 4.96563 5.03120 5.14309 5.16772 5.24558 5.38635 5.45429 5.46299 5.64389 5.79618 6.23142 6.27305 6.48664 6.83214 6.97991 7.09173 7.85904 8.03415 9.20270 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.002854 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.010243 B = 9807.897541 C =10825.708859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.151 3.849 3 H 0.092 0.908 4 C -0.128 4.128 5 C 0.176 3.824 6 H 0.054 0.946 7 N -0.752 5.752 8 C -0.222 4.222 9 H 0.063 0.937 10 C -0.064 4.064 11 N -0.984 5.984 12 Si 0.949 3.051 13 H -0.283 1.283 14 H -0.299 1.299 15 H -0.252 1.252 16 C -0.143 4.143 17 C 0.086 3.914 18 N -0.592 5.592 19 C 0.565 3.435 20 O -0.548 6.548 21 C -0.179 4.179 22 C 0.143 3.857 23 N -0.469 5.469 24 C 0.062 3.938 25 C 0.153 3.847 26 N -0.484 5.484 27 C 0.067 3.933 28 C -0.128 4.128 29 C -0.098 4.098 30 C 0.005 3.995 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.363 0.637 37 H 0.256 0.744 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.201 0.799 43 H 0.187 0.813 44 H 0.190 0.810 45 H 0.175 0.825 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.202 -2.238 -21.783 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.048 3.952 3 H 0.110 0.890 4 C -0.167 4.167 5 C 0.068 3.932 6 H 0.072 0.928 7 N -0.395 5.395 8 C -0.353 4.353 9 H 0.081 0.919 10 C -0.256 4.256 11 N -0.635 5.635 12 Si 0.777 3.223 13 H -0.210 1.210 14 H -0.226 1.226 15 H -0.177 1.177 16 C -0.184 4.184 17 C -0.036 4.036 18 N -0.323 5.323 19 C 0.354 3.646 20 O -0.428 6.428 21 C -0.185 4.185 22 C -0.031 4.031 23 N -0.177 5.177 24 C -0.061 4.061 25 C -0.019 4.019 26 N -0.193 5.193 27 C -0.076 4.076 28 C -0.148 4.148 29 C -0.105 4.105 30 C -0.022 4.022 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.195 0.805 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.218 0.782 43 H 0.204 0.796 44 H 0.207 0.793 45 H 0.192 0.808 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.574 -2.430 -22.857 27.765 hybrid contribution -0.972 -0.533 2.259 2.516 sum -16.546 -2.963 -20.599 26.587 Atomic orbital electron populations 1.22067 0.92283 1.02681 1.01307 1.21343 0.95700 0.95734 0.82382 0.89020 1.22220 0.95111 1.01190 0.98201 1.20413 0.92547 0.94980 0.85273 0.92824 1.42842 1.11515 1.55412 1.29701 1.19033 0.88758 1.21202 1.06308 0.91894 1.25438 0.97555 1.02681 0.99901 1.69872 1.17315 1.49181 1.27105 0.85491 0.79794 0.79290 0.77676 1.20977 1.22616 1.17677 1.22371 1.01256 0.99461 0.95276 1.22661 0.79150 1.02488 0.99350 1.48134 1.07813 1.56447 1.19927 1.18118 0.85491 0.78909 0.82120 1.90845 1.16838 1.57453 1.77680 1.21125 0.97462 1.00593 0.99342 1.24017 0.91600 0.97397 0.90039 1.67973 1.34859 1.06341 1.08564 1.20316 0.92001 0.95811 0.97940 1.23392 0.99970 0.89027 0.89553 1.67510 1.07801 1.14166 1.29812 1.22851 0.90863 0.99297 0.94546 1.22324 1.02115 0.94292 0.96046 1.19136 0.95565 0.98574 0.97190 1.22016 0.99277 0.90139 0.90733 0.92984 0.92274 0.91345 0.90114 0.92255 0.80462 0.93504 0.91624 0.93071 0.86896 0.88116 0.78247 0.79616 0.79323 0.80765 0.81534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 7.61 71.98 0.55 -2.31 16 2 C 0.15 3.43 3.49 44.97 0.16 3.58 16 3 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.13 -3.46 4.85 30.67 0.15 -3.32 16 5 C 0.18 5.83 2.73 45.02 0.12 5.96 16 6 H 0.05 1.84 8.08 -2.38 -0.02 1.83 16 7 N -0.75 -32.77 4.92 -322.80 -1.59 -34.36 16 8 C -0.22 -12.00 10.41 84.03 0.87 -11.12 16 9 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 10 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 11 N -0.98 -61.90 13.97 21.65 0.30 -61.60 16 12 Si 0.95 44.71 27.74 68.60 1.90 46.61 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 14 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 15 H -0.25 -10.67 6.52 99.48 0.65 -10.03 16 16 C -0.14 -4.14 5.64 30.53 0.17 -3.97 16 17 C 0.09 1.76 4.93 86.22 0.43 2.18 16 18 N -0.59 -12.96 2.98 -799.21 -2.38 -15.34 16 19 C 0.57 12.95 7.28 86.79 0.63 13.58 16 20 O -0.55 -14.76 12.34 -3.88 -0.05 -14.81 16 21 C -0.18 -3.58 5.52 -19.97 -0.11 -3.70 16 22 C 0.14 2.69 8.59 85.42 0.73 3.43 16 23 N -0.47 -9.83 10.33 -188.89 -1.95 -11.78 16 24 C 0.06 1.26 6.62 40.36 0.27 1.53 16 25 C 0.15 2.78 11.25 85.38 0.96 3.75 16 26 N -0.48 -8.68 10.28 -195.39 -2.01 -10.69 16 27 C 0.07 0.88 11.08 84.14 0.93 1.82 16 28 C -0.13 -1.61 9.88 22.40 0.22 -1.39 16 29 C -0.10 -1.74 5.75 -21.27 -0.12 -1.87 16 30 C 0.00 0.09 9.53 22.98 0.22 0.31 16 31 H 0.05 1.33 6.79 -2.39 -0.02 1.31 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.65 6.69 -2.38 -0.02 1.63 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.36 15.51 5.66 -92.71 -0.52 14.99 16 37 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 2.04 3.51 -3.25 -0.01 2.03 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.20 2.93 5.36 -2.91 -0.02 2.92 16 43 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 45 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.17 2.46 8.03 -2.91 -0.02 2.44 16 Total: -1.00 -71.70 365.61 1.31 -70.38 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.44 Total: 26.36 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 6.65 Total: 5.22 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -7.63 Total: -133.77 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.05 Total: -14.81 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.90 Total: 46.61 kcal Total: -71.70 1.31 -70.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685843.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.108 kcal (2) G-P(sol) polarization free energy of solvation -71.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds