Wall clock time and date at job start Sat Apr 11 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.69907 * 2 1 4 4 C 1.53190 * 109.58615 * 239.64093 * 2 1 3 5 5 C 1.53042 * 109.33438 * 185.56465 * 4 2 1 6 6 H 1.09002 * 109.45756 * 181.40661 * 5 4 2 7 7 N 1.46504 * 109.45839 * 301.35703 * 5 4 2 8 8 C 1.36940 * 119.99782 * 205.00503 * 7 5 4 9 9 H 1.08000 * 120.00146 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99672 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00223 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99816 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47111 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47219 * 120.00123 * 12 10 8 15 15 H 1.48502 * 109.47100 * 239.99865 * 12 10 8 16 16 C 1.53098 * 109.50601 * 61.34973 * 5 4 2 17 17 C 1.53192 * 109.32813 * 298.65270 * 16 5 4 18 18 N 1.46920 * 108.77417 * 54.64029 * 17 16 5 19 19 C 1.34781 * 120.63440 * 126.41293 * 18 17 16 20 20 O 1.21525 * 120.00333 * 185.51650 * 19 18 17 21 21 C 1.48008 * 119.99848 * 5.51460 * 19 18 17 22 22 C 1.38894 * 121.16632 * 49.06869 * 21 19 18 23 23 C 1.39352 * 119.67208 * 179.82304 * 22 21 19 24 24 N 1.31100 * 121.89801 * 0.44587 * 23 22 21 25 25 C 1.33288 * 121.62023 * 359.78842 * 24 23 22 26 26 C 1.40837 * 121.91106 * 179.97438 * 25 24 23 27 27 C 1.36166 * 118.76886 * 180.02562 * 26 25 24 28 28 N 1.32538 * 121.95929 * 359.97438 * 27 26 25 29 29 C 1.31338 * 122.60483 * 0.02562 * 28 27 26 30 30 C 1.40090 * 119.87536 * 359.97438 * 29 28 27 31 31 H 1.09003 * 109.46691 * 183.45324 * 1 2 3 32 32 H 1.09005 * 109.46962 * 303.45186 * 1 2 3 33 33 H 1.09003 * 109.46938 * 63.45133 * 1 2 3 34 34 H 1.09003 * 109.49913 * 305.52746 * 4 2 1 35 35 H 1.08991 * 109.49643 * 65.59534 * 4 2 1 36 36 H 0.96994 * 120.00068 * 25.00870 * 7 5 4 37 37 H 0.97000 * 119.99971 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.48717 * 178.70109 * 16 5 4 39 39 H 1.08991 * 109.49361 * 58.61459 * 16 5 4 40 40 H 1.08997 * 109.58899 * 294.84693 * 17 16 5 41 41 H 1.09004 * 109.70109 * 174.49341 * 17 16 5 42 42 H 1.08002 * 120.16465 * 0.02562 * 22 21 19 43 43 H 1.07995 * 119.04758 * 180.25432 * 23 22 21 44 44 H 1.07995 * 120.61309 * 0.02726 * 26 25 24 45 45 H 1.07999 * 119.01739 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.06560 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5676 -0.8480 -1.1707 6 1 3.9375 -1.3446 -2.0678 7 7 4.1571 0.4898 -1.0757 8 6 5.4413 0.7038 -1.5003 9 1 6.0196 -0.1136 -1.9050 10 6 6.0001 1.9713 -1.4097 11 7 5.2958 2.9672 -0.9152 12 14 7.7520 2.2632 -1.9884 13 1 8.3238 0.9906 -2.4970 14 1 7.7524 3.2757 -3.0746 15 1 8.5729 2.7552 -0.8529 16 6 3.9569 -1.6657 0.0637 17 6 3.4650 -0.9468 1.3238 18 7 2.0226 -0.6995 1.1945 19 6 1.1674 -1.1060 2.1537 20 8 -0.0308 -0.9860 1.9902 21 6 1.6876 -1.6987 3.4062 22 6 2.6995 -1.0794 4.1284 23 6 3.1634 -1.6631 5.3057 24 7 2.6777 -2.7945 5.7561 25 6 1.7092 -3.4451 5.1116 26 6 1.1834 -4.6610 5.5896 27 6 0.1949 -5.2717 4.8796 28 7 -0.2839 -4.7554 3.7567 29 6 0.1580 -3.6263 3.2521 30 6 1.1749 -2.9197 3.9074 31 1 -0.3633 -1.0258 0.0619 32 1 -0.3633 0.5665 0.8575 33 1 -0.3633 0.4593 -0.9193 34 1 1.6030 -1.7254 -1.2912 35 1 1.7656 -0.1673 -2.1367 36 1 3.6379 1.2238 -0.7119 37 1 5.6862 3.8530 -0.8523 38 1 5.0412 -1.7695 0.1039 39 1 3.4984 -2.6528 0.0055 40 1 3.9903 0.0021 1.4318 41 1 3.6520 -1.5695 2.1987 42 1 3.1225 -0.1484 3.7810 43 1 3.9476 -1.1708 5.8614 44 1 1.5572 -5.1008 6.5023 45 1 -0.2115 -6.2041 5.2427 46 1 -0.2616 -3.2431 2.3337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044693530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:01 Heat of formation + Delta-G solvation = 66.685155 kcal Electronic energy + Delta-G solvation = -30149.594339 eV Core-core repulsion = 26233.292342 eV Total energy + Delta-G solvation = -3916.301997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68181 -40.25268 -38.24972 -37.61610 -34.45269 -34.14285 -32.32117 -32.03380 -31.79139 -30.58833 -29.18648 -27.22947 -25.67323 -24.51799 -24.26116 -23.72325 -23.38251 -21.83489 -20.36856 -19.08593 -18.57070 -17.73617 -17.33465 -17.17569 -16.25948 -15.93258 -15.49383 -15.09978 -14.95334 -14.83086 -14.52929 -14.45206 -14.05536 -14.01012 -13.68991 -13.48766 -13.26618 -13.02675 -12.89894 -12.60688 -12.29218 -12.20165 -12.05351 -11.67305 -11.31661 -10.99994 -10.89490 -10.82934 -10.74777 -10.50874 -10.33950 -10.21548 -10.02584 -9.77896 -9.71553 -9.58968 -9.06541 -9.03245 -8.72207 -8.35381 -7.08077 -5.87517 -3.16782 -0.22446 0.40997 1.36701 2.53126 2.73706 2.95484 3.35755 3.42542 3.44228 3.78955 3.85084 4.09581 4.15671 4.32121 4.42716 4.45443 4.50249 4.90956 5.01122 5.03186 5.12582 5.20483 5.28862 5.32948 5.40562 5.48236 5.51236 5.57220 5.60002 5.64705 5.68680 5.78107 5.88949 5.99993 6.04243 6.09116 6.20967 6.29017 6.32873 6.38555 6.44673 6.63329 6.65812 6.73732 6.90522 7.45337 7.45696 7.61656 7.66073 8.07098 8.30835 9.42706 9.98006 10.33045 11.34806 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.003253 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.932610 B = 8604.524297 C = 9456.015934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.145 3.855 3 H 0.085 0.915 4 C -0.134 4.134 5 C 0.173 3.827 6 H 0.053 0.947 7 N -0.722 5.722 8 C -0.240 4.240 9 H 0.071 0.929 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.149 4.149 17 C 0.106 3.894 18 N -0.582 5.582 19 C 0.553 3.447 20 O -0.525 6.525 21 C -0.033 4.033 22 C -0.147 4.147 23 C 0.154 3.846 24 N -0.470 5.470 25 C 0.156 3.844 26 C -0.146 4.146 27 C 0.091 3.909 28 N -0.487 5.487 29 C 0.172 3.828 30 C -0.136 4.136 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.153 0.847 43 H 0.172 0.828 44 H 0.147 0.853 45 H 0.160 0.840 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 -11.920 10.852 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.043 3.957 3 H 0.103 0.897 4 C -0.173 4.173 5 C 0.063 3.937 6 H 0.071 0.929 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.089 0.911 10 C -0.207 4.207 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.190 4.190 17 C -0.016 4.016 18 N -0.313 5.313 19 C 0.340 3.660 20 O -0.404 6.404 21 C -0.046 4.046 22 C -0.167 4.167 23 C -0.019 4.019 24 N -0.178 5.178 25 C 0.029 3.971 26 C -0.167 4.167 27 C -0.053 4.053 28 N -0.195 5.195 29 C 0.000 4.000 30 C -0.141 4.141 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.171 0.829 43 H 0.189 0.811 44 H 0.165 0.835 45 H 0.178 0.822 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.434 -12.874 11.107 18.980 hybrid contribution 1.517 1.406 -0.403 2.108 sum -6.917 -11.468 10.704 17.144 Atomic orbital electron populations 1.22236 0.92906 1.03324 1.00861 1.21385 0.95054 0.96038 0.83215 0.89669 1.22258 0.97382 1.00374 0.97273 1.20214 0.90424 0.88134 0.94967 0.92921 1.42516 1.13845 1.04635 1.75444 1.19273 0.89706 0.94198 1.33928 0.91125 1.24720 0.98283 0.95886 1.01830 1.69654 1.36463 1.00621 1.51251 0.86161 0.84628 0.77685 0.77948 1.20590 1.21903 1.21903 1.22523 1.01583 0.97961 0.96928 1.21972 0.78760 1.02114 0.98710 1.48153 1.07981 1.55494 1.19695 1.18103 0.86350 0.78833 0.82761 1.90865 1.14753 1.55995 1.78783 1.20524 0.94534 0.93791 0.95773 1.22623 0.95768 1.02069 0.96255 1.23167 0.96306 0.90220 0.92179 1.67875 1.09678 1.08413 1.31873 1.18880 0.92731 0.94893 0.90591 1.21718 0.98480 0.94321 1.02154 1.22344 0.93164 0.99387 0.90413 1.67619 1.27583 1.11967 1.12338 1.23424 0.89832 0.88608 0.98138 1.19577 1.00316 0.96449 0.97738 0.91331 0.91256 0.93636 0.91922 0.90448 0.78170 0.93506 0.90573 0.93263 0.89172 0.91076 0.82892 0.81082 0.83518 0.82234 0.81058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.59 37.16 0.28 -1.68 16 2 C 0.14 2.22 3.20 -67.60 -0.22 2.00 16 3 H 0.09 1.47 6.64 -51.93 -0.34 1.13 16 4 C -0.13 -2.05 5.07 -26.61 -0.13 -2.18 16 5 C 0.17 3.05 3.10 -67.86 -0.21 2.84 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 N -0.72 -15.97 4.31 -53.35 -0.23 -16.20 16 8 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 9 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 10 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 11 N -0.93 -26.23 13.06 55.49 0.72 -25.50 16 12 Si 0.90 21.18 29.55 -169.99 -5.02 16.15 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 C -0.15 -2.31 5.78 -26.58 -0.15 -2.46 16 17 C 0.11 1.54 5.11 -3.71 -0.02 1.52 16 18 N -0.58 -8.44 2.97 -166.27 -0.49 -8.93 16 19 C 0.55 7.97 6.65 -12.25 -0.08 7.89 16 20 O -0.53 -8.40 10.95 5.34 0.06 -8.34 16 21 C -0.03 -0.42 4.85 -104.37 -0.51 -0.93 16 22 C -0.15 -1.59 7.68 -38.92 -0.30 -1.89 16 23 C 0.15 1.54 11.14 -17.45 -0.19 1.35 16 24 N -0.47 -5.61 10.33 -10.95 -0.11 -5.72 16 25 C 0.16 1.94 6.63 -84.88 -0.56 1.38 16 26 C -0.15 -1.52 10.08 -39.34 -0.40 -1.92 16 27 C 0.09 0.93 11.06 -17.99 -0.20 0.73 16 28 N -0.49 -6.19 10.31 -13.24 -0.14 -6.32 16 29 C 0.17 2.28 10.50 -17.07 -0.18 2.10 16 30 C -0.14 -1.79 5.76 -106.55 -0.61 -2.41 16 31 H 0.07 1.01 6.76 -51.93 -0.35 0.66 16 32 H 0.07 1.07 6.74 -51.93 -0.35 0.72 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.38 9.04 6.06 -40.82 -0.25 8.79 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.50 7.74 -51.93 -0.40 1.10 16 41 H 0.07 0.90 5.16 -51.93 -0.27 0.63 16 42 H 0.15 1.49 7.43 -52.49 -0.39 1.10 16 43 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 46 H 0.17 2.28 6.42 -52.49 -0.34 1.95 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -29.91 364.48 -9.49 -39.40 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.04 Total: 10.23 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.73 Total: -0.26 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.25 Total: -62.68 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.06 Total: -8.34 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.91 -9.49 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044693530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.086 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds