Wall clock time and date at job start Sat Apr 11 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.70197 * 2 1 4 4 C 1.53183 * 109.58978 * 120.35325 * 2 1 3 5 5 C 1.53039 * 109.31610 * 174.42509 * 4 2 1 6 6 H 1.08999 * 109.46162 * 178.61894 * 5 4 2 7 7 N 1.46494 * 109.46067 * 58.65446 * 5 4 2 8 8 C 1.36940 * 119.99965 * 155.00400 * 7 5 4 9 9 H 1.07995 * 120.00288 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00056 * 180.02562 * 8 7 5 11 11 N 1.31625 * 119.99973 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00280 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47236 * 90.00092 * 12 10 8 14 14 H 1.48496 * 109.47265 * 210.00058 * 12 10 8 15 15 H 1.48504 * 109.46982 * 329.99997 * 12 10 8 16 16 C 1.53050 * 109.53619 * 298.63549 * 5 4 2 17 17 C 1.53187 * 109.30876 * 61.36430 * 16 5 4 18 18 N 1.46927 * 109.58674 * 239.64888 * 2 1 3 19 19 C 1.34773 * 120.62972 * 6.32464 * 18 2 1 20 20 O 1.21533 * 119.99947 * 354.81726 * 19 18 2 21 21 C 1.48000 * 119.99831 * 174.82184 * 19 18 2 22 22 C 1.38895 * 121.17035 * 310.80049 * 21 19 18 23 23 C 1.39350 * 119.67117 * 179.82463 * 22 21 19 24 24 N 1.31098 * 121.90057 * 0.44476 * 23 22 21 25 25 C 1.33280 * 121.61871 * 359.78403 * 24 23 22 26 26 C 1.40842 * 121.90779 * 179.97438 * 25 24 23 27 27 C 1.36161 * 118.76955 * 180.02562 * 26 25 24 28 28 N 1.32542 * 121.96085 * 359.97438 * 27 26 25 29 29 C 1.31341 * 122.60017 * 359.97438 * 28 27 26 30 30 C 1.40081 * 119.87758 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.46881 * 177.23900 * 1 2 3 32 32 H 1.09001 * 109.47056 * 297.23202 * 1 2 3 33 33 H 1.08992 * 109.47474 * 57.23175 * 1 2 3 34 34 H 1.08999 * 109.49982 * 294.37718 * 4 2 1 35 35 H 1.09006 * 109.50157 * 54.44222 * 4 2 1 36 36 H 0.97001 * 120.00165 * 335.00200 * 7 5 4 37 37 H 0.96996 * 119.99982 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.49480 * 181.31222 * 16 5 4 39 39 H 1.08998 * 109.49500 * 301.41648 * 16 5 4 40 40 H 1.09002 * 109.58707 * 185.57644 * 17 16 5 41 41 H 1.09005 * 109.59157 * 65.15220 * 17 16 5 42 42 H 1.07997 * 120.15895 * 0.02562 * 22 21 19 43 43 H 1.08002 * 119.04677 * 180.20716 * 23 22 21 44 44 H 1.07997 * 120.61286 * 0.03164 * 26 25 24 45 45 H 1.08002 * 119.02434 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.06249 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2453 5 6 3.5675 -0.8478 1.1701 6 1 3.9378 -1.3447 2.0668 7 7 4.1570 0.4899 1.0749 8 6 5.4414 0.7039 1.4989 9 1 6.0199 -0.1135 1.9031 10 6 5.9998 1.9716 1.4092 11 7 5.2949 2.9679 0.9161 12 14 7.7516 2.2638 1.9881 13 1 8.6898 2.0416 0.8587 14 1 7.8855 3.6601 2.4755 15 1 8.0721 1.3218 3.0906 16 6 3.9570 -1.6656 -0.0636 17 6 3.4651 -0.9468 -1.3237 18 7 2.0225 -0.6995 -1.1945 19 6 1.1668 -1.1113 -2.1508 20 8 -0.0314 -0.9901 -1.9872 21 6 1.6862 -1.7114 -3.4000 22 6 2.6960 -1.0951 -4.1279 23 6 3.1642 -1.6896 -5.2980 24 7 2.6728 -2.8196 -5.7456 25 6 1.6998 -3.4626 -5.1005 26 6 1.1671 -4.6766 -5.5760 27 6 0.1736 -5.2790 -4.8661 28 7 -0.3032 -4.7572 -3.7449 29 6 0.1457 -3.6299 -3.2421 30 6 1.1682 -2.9318 -3.8975 31 1 -0.3633 -1.0264 -0.0495 32 1 -0.3633 0.4703 0.9138 33 1 -0.3634 0.5562 -0.8640 34 1 1.7661 -0.1668 2.1368 35 1 1.6027 -1.7251 1.2916 36 1 3.6376 1.2241 0.7115 37 1 5.6850 3.8538 0.8537 38 1 5.0413 -1.7694 -0.1038 39 1 3.4983 -2.6527 -0.0053 40 1 3.6518 -1.5716 -2.1972 41 1 3.9903 0.0022 -1.4317 42 1 3.1184 -0.1615 -3.7868 43 1 3.9520 -1.2034 -5.8543 44 1 1.5398 -5.1214 -6.4868 45 1 -0.2376 -6.2103 -5.2268 46 1 -0.2731 -3.2416 -2.3255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044693533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:04 Heat of formation + Delta-G solvation = 66.841200 kcal Electronic energy + Delta-G solvation = -30149.268033 eV Core-core repulsion = 26232.972802 eV Total energy + Delta-G solvation = -3916.295230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68171 -40.25373 -38.24932 -37.61691 -34.45042 -34.14301 -32.32124 -32.03370 -31.79046 -30.58782 -29.18519 -27.23019 -25.67339 -24.51697 -24.26067 -23.72173 -23.38155 -21.83388 -20.36876 -19.08456 -18.56825 -17.73516 -17.33341 -17.17503 -16.25628 -15.93394 -15.49474 -15.09866 -14.95299 -14.82898 -14.52846 -14.45185 -14.05712 -14.00835 -13.69148 -13.48573 -13.26777 -13.02710 -12.89865 -12.60363 -12.29132 -12.20119 -12.05152 -11.67118 -11.31623 -10.99272 -10.88492 -10.82775 -10.74776 -10.50872 -10.35076 -10.22431 -10.03989 -9.77716 -9.71179 -9.58882 -9.06219 -9.02654 -8.72064 -8.35255 -7.08032 -5.87253 -3.16572 -0.22390 0.41051 1.36736 2.53047 2.73709 2.95780 3.35983 3.42540 3.43675 3.79067 3.85119 4.09688 4.15739 4.32196 4.42797 4.45464 4.50398 4.90982 5.01202 5.03225 5.12654 5.20518 5.28999 5.33040 5.40648 5.48303 5.51305 5.57301 5.60054 5.64687 5.68718 5.78195 5.88995 6.00060 6.04343 6.09224 6.21011 6.29158 6.32963 6.38611 6.44658 6.63446 6.65971 6.73796 6.90592 7.45395 7.45750 7.61284 7.66163 8.07165 8.31138 9.42871 9.98180 10.33209 11.35019 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.003250 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.267227 B = 8612.553832 C = 9464.274513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.145 3.855 3 H 0.086 0.914 4 C -0.134 4.134 5 C 0.173 3.827 6 H 0.053 0.947 7 N -0.722 5.722 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.149 4.149 17 C 0.106 3.894 18 N -0.582 5.582 19 C 0.553 3.447 20 O -0.526 6.526 21 C -0.033 4.033 22 C -0.147 4.147 23 C 0.154 3.846 24 N -0.470 5.470 25 C 0.156 3.844 26 C -0.146 4.146 27 C 0.091 3.909 28 N -0.487 5.487 29 C 0.172 3.828 30 C -0.136 4.136 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.383 0.617 37 H 0.256 0.744 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.153 0.847 43 H 0.172 0.828 44 H 0.147 0.853 45 H 0.160 0.840 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.590 -11.903 -10.833 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.043 3.957 3 H 0.104 0.896 4 C -0.173 4.173 5 C 0.063 3.937 6 H 0.071 0.929 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.190 4.190 17 C -0.016 4.016 18 N -0.313 5.313 19 C 0.339 3.661 20 O -0.404 6.404 21 C -0.046 4.046 22 C -0.167 4.167 23 C -0.019 4.019 24 N -0.178 5.178 25 C 0.029 3.971 26 C -0.167 4.167 27 C -0.053 4.053 28 N -0.195 5.195 29 C 0.000 4.000 30 C -0.141 4.141 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.171 0.829 43 H 0.189 0.811 44 H 0.165 0.835 45 H 0.178 0.822 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.452 -12.842 -11.079 18.950 hybrid contribution 1.530 1.384 0.399 2.101 sum -6.921 -11.458 -10.681 17.125 Atomic orbital electron populations 1.22233 0.92904 1.03255 1.00932 1.21385 0.95055 0.96050 0.83209 0.89649 1.22260 0.97378 1.00373 0.97285 1.20200 0.90427 0.88137 0.94974 0.92940 1.42506 1.13794 1.04627 1.75497 1.19226 0.89704 0.94168 1.34080 0.91183 1.24720 0.98271 0.95870 1.01830 1.69645 1.36487 1.00617 1.51264 0.86227 0.84717 0.77148 0.78292 1.21749 1.21820 1.20798 1.22521 1.01588 0.97961 0.96953 1.21979 0.78756 1.02108 0.98722 1.48154 1.07955 1.55351 1.19839 1.18101 0.86346 0.78846 0.82760 1.90867 1.14767 1.56122 1.78659 1.20524 0.94568 0.93776 0.95753 1.22619 0.95821 1.02035 0.96241 1.23167 0.96339 0.90164 0.92204 1.67872 1.09603 1.08671 1.31694 1.18879 0.92729 0.94895 0.90590 1.21717 0.98397 0.94392 1.02174 1.22344 0.93172 0.99368 0.90424 1.67625 1.27770 1.11760 1.12357 1.23429 0.89797 0.88655 0.98119 1.19577 1.00254 0.96485 0.97767 0.91405 0.93644 0.91176 0.90445 0.91926 0.78165 0.93453 0.90569 0.93268 0.91072 0.89134 0.82894 0.81082 0.83520 0.82236 0.81041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.59 37.16 0.28 -1.68 16 2 C 0.14 2.22 3.20 -67.60 -0.22 2.00 16 3 H 0.09 1.48 6.64 -51.93 -0.34 1.13 16 4 C -0.13 -2.05 5.07 -26.62 -0.13 -2.19 16 5 C 0.17 3.05 3.10 -67.89 -0.21 2.84 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 N -0.72 -15.97 4.31 -53.38 -0.23 -16.20 16 8 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 11 N -0.93 -26.24 13.06 55.49 0.72 -25.51 16 12 Si 0.90 21.18 29.55 -169.99 -5.02 16.16 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C -0.15 -2.32 5.78 -26.61 -0.15 -2.47 16 17 C 0.11 1.54 5.12 -3.71 -0.02 1.52 16 18 N -0.58 -8.44 2.97 -166.27 -0.49 -8.93 16 19 C 0.55 7.97 6.66 -12.26 -0.08 7.89 16 20 O -0.53 -8.40 10.92 5.34 0.06 -8.34 16 21 C -0.03 -0.42 4.84 -104.37 -0.51 -0.93 16 22 C -0.15 -1.59 7.68 -38.92 -0.30 -1.89 16 23 C 0.15 1.54 11.14 -17.45 -0.19 1.35 16 24 N -0.47 -5.61 10.33 -10.95 -0.11 -5.72 16 25 C 0.16 1.95 6.63 -84.88 -0.56 1.38 16 26 C -0.15 -1.52 10.08 -39.34 -0.40 -1.92 16 27 C 0.09 0.93 11.06 -17.99 -0.20 0.73 16 28 N -0.49 -6.19 10.31 -13.24 -0.14 -6.33 16 29 C 0.17 2.28 10.50 -17.07 -0.18 2.10 16 30 C -0.14 -1.79 5.76 -106.55 -0.61 -2.41 16 31 H 0.07 1.00 6.80 -51.93 -0.35 0.65 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.08 6.69 -51.93 -0.35 0.73 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.38 9.04 6.06 -40.82 -0.25 8.79 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.90 5.15 -51.93 -0.27 0.63 16 41 H 0.09 1.51 7.74 -51.93 -0.40 1.11 16 42 H 0.15 1.49 7.44 -52.49 -0.39 1.10 16 43 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.17 2.29 6.41 -52.48 -0.34 1.95 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -29.89 364.44 -9.49 -39.38 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -6.04 Total: 10.29 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -3.73 Total: -0.28 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -0.25 Total: -62.70 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.06 Total: -8.34 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.89 -9.49 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044693533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.222 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds