Wall clock time and date at job start Sat Apr 11 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.70197 * 2 1 4 4 C 1.53183 * 109.58978 * 120.35325 * 2 1 3 5 5 C 1.53039 * 109.31610 * 174.42509 * 4 2 1 6 6 H 1.08999 * 109.46162 * 178.61894 * 5 4 2 7 7 N 1.46494 * 109.46067 * 58.65446 * 5 4 2 8 8 C 1.36940 * 119.99965 * 155.00400 * 7 5 4 9 9 H 1.07995 * 120.00288 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00056 * 180.02562 * 8 7 5 11 11 N 1.31625 * 119.99973 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00280 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47236 * 90.00092 * 12 10 8 14 14 H 1.48496 * 109.47265 * 210.00058 * 12 10 8 15 15 H 1.48504 * 109.46982 * 329.99997 * 12 10 8 16 16 C 1.53050 * 109.53619 * 298.63549 * 5 4 2 17 17 C 1.53187 * 109.30876 * 61.36430 * 16 5 4 18 18 N 1.46927 * 109.58674 * 239.64888 * 2 1 3 19 19 C 1.34773 * 120.62972 * 6.32464 * 18 2 1 20 20 O 1.21533 * 119.99947 * 354.81726 * 19 18 2 21 21 C 1.48000 * 119.99831 * 174.82184 * 19 18 2 22 22 C 1.38895 * 121.17035 * 310.80049 * 21 19 18 23 23 C 1.39350 * 119.67117 * 179.82463 * 22 21 19 24 24 N 1.31098 * 121.90057 * 0.44476 * 23 22 21 25 25 C 1.33280 * 121.61871 * 359.78403 * 24 23 22 26 26 C 1.40842 * 121.90779 * 179.97438 * 25 24 23 27 27 C 1.36161 * 118.76955 * 180.02562 * 26 25 24 28 28 N 1.32542 * 121.96085 * 359.97438 * 27 26 25 29 29 C 1.31341 * 122.60017 * 359.97438 * 28 27 26 30 30 C 1.40081 * 119.87758 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.46881 * 177.23900 * 1 2 3 32 32 H 1.09001 * 109.47056 * 297.23202 * 1 2 3 33 33 H 1.08992 * 109.47474 * 57.23175 * 1 2 3 34 34 H 1.08999 * 109.49982 * 294.37718 * 4 2 1 35 35 H 1.09006 * 109.50157 * 54.44222 * 4 2 1 36 36 H 0.97001 * 120.00165 * 335.00200 * 7 5 4 37 37 H 0.96996 * 119.99982 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.49480 * 181.31222 * 16 5 4 39 39 H 1.08998 * 109.49500 * 301.41648 * 16 5 4 40 40 H 1.09002 * 109.58707 * 185.57644 * 17 16 5 41 41 H 1.09005 * 109.59157 * 65.15220 * 17 16 5 42 42 H 1.07997 * 120.15895 * 0.02562 * 22 21 19 43 43 H 1.08002 * 119.04677 * 180.20716 * 23 22 21 44 44 H 1.07997 * 120.61286 * 0.03164 * 26 25 24 45 45 H 1.08002 * 119.02434 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.06249 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2453 5 6 3.5675 -0.8478 1.1701 6 1 3.9378 -1.3447 2.0668 7 7 4.1570 0.4899 1.0749 8 6 5.4414 0.7039 1.4989 9 1 6.0199 -0.1135 1.9031 10 6 5.9998 1.9716 1.4092 11 7 5.2949 2.9679 0.9161 12 14 7.7516 2.2638 1.9881 13 1 8.6898 2.0416 0.8587 14 1 7.8855 3.6601 2.4755 15 1 8.0721 1.3218 3.0906 16 6 3.9570 -1.6656 -0.0636 17 6 3.4651 -0.9468 -1.3237 18 7 2.0225 -0.6995 -1.1945 19 6 1.1668 -1.1113 -2.1508 20 8 -0.0314 -0.9901 -1.9872 21 6 1.6862 -1.7114 -3.4000 22 6 2.6960 -1.0951 -4.1279 23 6 3.1642 -1.6896 -5.2980 24 7 2.6728 -2.8196 -5.7456 25 6 1.6998 -3.4626 -5.1005 26 6 1.1671 -4.6766 -5.5760 27 6 0.1736 -5.2790 -4.8661 28 7 -0.3032 -4.7572 -3.7449 29 6 0.1457 -3.6299 -3.2421 30 6 1.1682 -2.9318 -3.8975 31 1 -0.3633 -1.0264 -0.0495 32 1 -0.3633 0.4703 0.9138 33 1 -0.3634 0.5562 -0.8640 34 1 1.7661 -0.1668 2.1368 35 1 1.6027 -1.7251 1.2916 36 1 3.6376 1.2241 0.7115 37 1 5.6850 3.8538 0.8537 38 1 5.0413 -1.7694 -0.1038 39 1 3.4983 -2.6527 -0.0053 40 1 3.6518 -1.5716 -2.1972 41 1 3.9903 0.0022 -1.4317 42 1 3.1184 -0.1615 -3.7868 43 1 3.9520 -1.2034 -5.8543 44 1 1.5398 -5.1214 -6.4868 45 1 -0.2376 -6.2103 -5.2268 46 1 -0.2731 -3.2416 -2.3255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044693533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:03 Heat of formation + Delta-G solvation = 49.008167 kcal Electronic energy + Delta-G solvation = -30150.041331 eV Core-core repulsion = 26232.972802 eV Total energy + Delta-G solvation = -3917.068529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.63138 -41.37507 -39.13613 -38.91511 -35.94438 -35.23769 -33.76264 -33.38638 -32.67371 -31.51041 -30.83119 -28.52796 -26.64719 -25.74001 -25.43006 -25.14744 -24.53946 -23.00742 -21.52702 -20.21775 -19.59837 -19.20105 -18.68285 -18.21055 -17.29843 -17.08873 -16.78477 -16.32433 -15.99852 -15.79244 -15.73774 -15.59688 -15.46464 -15.31124 -14.91682 -14.71189 -14.52518 -14.07566 -13.94883 -13.90668 -13.44910 -13.40114 -13.08792 -13.01762 -12.87229 -12.70742 -12.53318 -12.12135 -12.02749 -12.01656 -11.71565 -11.61293 -11.41843 -11.12497 -10.89337 -10.69111 -10.46373 -10.17246 -9.64718 -9.56579 -8.94838 -7.89152 -5.16141 -1.12233 -0.44833 0.44852 1.46088 1.50710 1.52135 1.59229 1.74457 1.93193 2.60001 2.90842 3.02393 3.11451 3.30434 3.42643 3.44577 3.56479 3.60666 3.82783 3.87134 3.96899 4.03900 4.14363 4.22518 4.24958 4.30954 4.35076 4.45829 4.54195 4.60772 4.65068 4.70802 4.76368 4.83686 4.85204 4.93033 5.01630 5.08380 5.19802 5.24752 5.25449 5.32013 5.40488 5.51298 5.59432 5.65376 6.28770 6.32951 6.59917 6.79035 6.92190 7.40735 8.15164 8.39380 9.33761 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.003250 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.267227 B = 8612.553832 C = 9464.274513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.148 3.852 3 H 0.062 0.938 4 C -0.124 4.124 5 C 0.167 3.833 6 H 0.048 0.952 7 N -0.729 5.729 8 C -0.230 4.230 9 H 0.075 0.925 10 C -0.070 4.070 11 N -0.966 5.966 12 Si 0.962 3.038 13 H -0.288 1.288 14 H -0.302 1.302 15 H -0.274 1.274 16 C -0.142 4.142 17 C 0.116 3.884 18 N -0.582 5.582 19 C 0.556 3.444 20 O -0.544 6.544 21 C -0.051 4.051 22 C -0.138 4.138 23 C 0.161 3.839 24 N -0.478 5.478 25 C 0.138 3.862 26 C -0.140 4.140 27 C 0.088 3.912 28 N -0.502 5.502 29 C 0.155 3.845 30 C -0.147 4.147 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.375 0.625 37 H 0.248 0.752 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.163 0.837 43 H 0.209 0.791 44 H 0.173 0.827 45 H 0.195 0.805 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 -13.763 -12.113 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.045 3.955 3 H 0.080 0.920 4 C -0.163 4.163 5 C 0.059 3.941 6 H 0.066 0.934 7 N -0.370 5.370 8 C -0.362 4.362 9 H 0.092 0.908 10 C -0.262 4.262 11 N -0.617 5.617 12 Si 0.793 3.207 13 H -0.216 1.216 14 H -0.230 1.230 15 H -0.199 1.199 16 C -0.182 4.182 17 C -0.006 4.006 18 N -0.313 5.313 19 C 0.344 3.656 20 O -0.423 6.423 21 C -0.064 4.064 22 C -0.159 4.159 23 C -0.013 4.013 24 N -0.187 5.187 25 C 0.012 3.988 26 C -0.160 4.160 27 C -0.057 4.057 28 N -0.210 5.210 29 C -0.016 4.016 30 C -0.152 4.152 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.208 0.792 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.181 0.819 43 H 0.226 0.774 44 H 0.190 0.810 45 H 0.212 0.788 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.924 -14.762 -12.349 20.813 hybrid contribution 1.317 1.872 0.744 2.406 sum -6.607 -12.890 -11.605 18.560 Atomic orbital electron populations 1.22087 0.92057 1.02974 1.00928 1.21255 0.95553 0.94963 0.83724 0.92018 1.22152 0.95653 1.01339 0.97131 1.20404 0.91723 0.86250 0.95762 0.93420 1.42628 1.12949 1.06190 1.75240 1.19556 0.90737 0.93955 1.31997 0.90757 1.25374 1.01509 0.96049 1.03301 1.69787 1.37822 1.00631 1.53498 0.85300 0.81122 0.76332 0.77942 1.21552 1.22950 1.19878 1.22385 1.01253 0.98524 0.96080 1.21843 0.78442 1.01148 0.99152 1.48101 1.07963 1.55442 1.19771 1.18303 0.86006 0.78261 0.83036 1.90853 1.15599 1.56748 1.79132 1.20401 0.95983 0.94473 0.95581 1.22829 0.94775 1.02036 0.96211 1.23757 0.96381 0.89445 0.91704 1.67957 1.09614 1.09329 1.31774 1.19217 0.93204 0.95828 0.90564 1.22047 0.97779 0.93490 1.02726 1.22896 0.92967 1.00299 0.89487 1.67618 1.28221 1.11669 1.13494 1.23291 0.90589 0.89396 0.98359 1.19628 1.00541 0.96676 0.98347 0.91591 0.92525 0.92410 0.90731 0.90047 0.79183 0.94270 0.91348 0.91266 0.88864 0.91451 0.81903 0.77406 0.80990 0.78827 0.82113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.54 7.59 71.98 0.55 -3.00 16 2 C 0.15 4.53 3.20 44.97 0.14 4.67 16 3 H 0.06 2.21 6.64 -2.38 -0.02 2.19 16 4 C -0.12 -3.71 5.07 30.67 0.16 -3.55 16 5 C 0.17 5.80 3.10 45.02 0.14 5.94 16 6 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 7 N -0.73 -32.43 4.31 -322.81 -1.39 -33.82 16 8 C -0.23 -11.63 9.93 84.03 0.83 -10.80 16 9 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 10 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 11 N -0.97 -55.46 13.06 21.65 0.28 -55.18 16 12 Si 0.96 43.76 29.55 68.60 2.03 45.79 16 13 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 16 C -0.14 -4.23 5.78 30.67 0.18 -4.05 16 17 C 0.12 3.27 5.12 86.36 0.44 3.71 16 18 N -0.58 -16.67 2.97 -798.25 -2.37 -19.04 16 19 C 0.56 15.89 6.66 86.83 0.58 16.47 16 20 O -0.54 -17.52 10.92 -3.82 -0.04 -17.56 16 21 C -0.05 -1.28 4.84 -19.70 -0.10 -1.37 16 22 C -0.14 -2.76 7.68 22.70 0.17 -2.59 16 23 C 0.16 2.77 11.14 85.07 0.95 3.72 16 24 N -0.48 -10.24 10.33 -188.55 -1.95 -12.19 16 25 C 0.14 3.20 6.63 40.45 0.27 3.46 16 26 C -0.14 -2.58 10.08 22.42 0.23 -2.35 16 27 C 0.09 1.60 11.06 84.10 0.93 2.53 16 28 N -0.50 -12.26 10.31 -195.80 -2.02 -14.28 16 29 C 0.16 4.08 10.50 85.21 0.89 4.97 16 30 C -0.15 -3.75 5.76 -21.11 -0.12 -3.87 16 31 H 0.07 1.93 6.80 -2.39 -0.02 1.91 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.81 6.69 -2.39 -0.02 1.79 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.37 18.07 6.06 -92.71 -0.56 17.50 16 37 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.09 2.21 5.15 -2.39 -0.01 2.20 16 41 H 0.07 2.25 7.74 -2.38 -0.02 2.23 16 42 H 0.16 2.91 7.44 -2.91 -0.02 2.89 16 43 H 0.21 1.92 8.06 -2.91 -0.02 1.89 16 44 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 45 H 0.19 2.02 8.06 -2.91 -0.02 1.99 16 46 H 0.16 4.41 6.41 -2.91 -0.02 4.39 16 Total: -1.00 -64.67 364.44 1.70 -62.96 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.46 Total: 32.71 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.71 Total: 10.62 kcal Atomic # 7 Polarization: -127.07 SS G_CDS: -7.45 Total: -134.51 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.04 Total: -17.56 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -64.67 1.70 -62.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044693533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.970 kcal (2) G-P(sol) polarization free energy of solvation -64.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds