Wall clock time and date at job start Sat Apr 11 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.58885 * 2 1 4 4 C 1.53192 * 109.59931 * 120.43387 * 2 1 3 5 5 C 1.53038 * 109.31515 * 65.13385 * 4 2 1 6 6 H 1.09003 * 109.45788 * 301.37081 * 5 4 2 7 7 N 1.46495 * 109.46030 * 181.40311 * 5 4 2 8 8 C 1.36945 * 119.99815 * 154.97254 * 7 5 4 9 9 H 1.07992 * 120.00096 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99791 * 179.97438 * 8 7 5 11 11 N 1.31624 * 120.00005 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00158 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46868 * 90.00021 * 12 10 8 14 14 H 1.48501 * 109.47162 * 330.00066 * 12 10 8 15 15 H 1.48500 * 109.47606 * 210.00259 * 12 10 8 16 16 C 1.53036 * 109.52858 * 61.38431 * 5 4 2 17 17 C 1.53194 * 109.31138 * 298.63317 * 16 5 4 18 18 N 1.46923 * 108.77762 * 54.63418 * 17 16 5 19 19 C 1.34777 * 120.62789 * 126.41581 * 18 17 16 20 20 O 1.21549 * 119.99696 * 179.73729 * 19 18 17 21 21 C 1.47915 * 120.00352 * 359.72848 * 19 18 17 22 22 C 1.38934 * 119.84856 * 202.75179 * 21 19 18 23 23 C 1.40650 * 117.38952 * 180.02562 * 22 21 19 24 24 C 1.40255 * 122.03942 * 180.02562 * 23 22 21 25 25 C 1.36274 * 119.47253 * 179.97438 * 24 23 22 26 26 C 1.39317 * 120.87326 * 359.97438 * 25 24 23 27 27 C 1.36223 * 121.15962 * 0.04564 * 26 25 24 28 28 C 1.40341 * 119.67876 * 359.94924 * 27 26 25 29 29 N 1.33814 * 121.61406 * 180.02562 * 28 27 26 30 30 N 1.28441 * 121.68339 * 179.71925 * 29 28 27 31 31 H 1.08996 * 109.46870 * 180.28659 * 1 2 3 32 32 H 1.08997 * 109.46730 * 300.28377 * 1 2 3 33 33 H 1.09004 * 109.46965 * 60.28213 * 1 2 3 34 34 H 1.08996 * 109.48407 * 305.18491 * 4 2 1 35 35 H 1.09003 * 109.50792 * 185.08998 * 4 2 1 36 36 H 0.96999 * 120.00411 * 334.96845 * 7 5 4 37 37 H 0.97006 * 120.00071 * 359.97438 * 11 10 8 38 38 H 1.08997 * 109.49921 * 58.58101 * 16 5 4 39 39 H 1.08996 * 109.49874 * 178.67930 * 16 5 4 40 40 H 1.09004 * 109.58564 * 174.42489 * 17 16 5 41 41 H 1.09002 * 109.58800 * 294.70008 * 17 16 5 42 42 H 1.08003 * 121.30577 * 359.97438 * 22 21 19 43 43 H 1.07999 * 120.26747 * 0.02562 * 24 23 22 44 44 H 1.08002 * 119.55984 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.42013 * 180.02562 * 26 25 24 46 46 H 1.08006 * 120.16457 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0439 -0.7310 1.2443 5 6 1.6416 -2.2056 1.1674 6 1 0.5566 -2.2827 1.0964 7 7 2.1024 -2.9007 2.3718 8 6 1.4645 -4.0370 2.7928 9 1 0.6215 -4.4204 2.2373 10 6 1.9015 -4.6959 3.9338 11 7 2.9287 -4.2283 4.6111 12 14 1.0310 -6.2454 4.5086 13 1 1.6665 -7.4319 3.8811 14 1 -0.3997 -6.1842 4.1156 15 1 1.1342 -6.3521 5.9862 16 6 2.2801 -2.8463 -0.0670 17 6 1.7692 -2.1393 -1.3264 18 7 2.0226 -0.6980 -1.1953 19 6 2.6937 -0.0289 -2.1537 20 8 2.8928 1.1643 -2.0358 21 6 3.1881 -0.7466 -3.3488 22 6 4.2452 -0.2223 -4.0822 23 6 4.6731 -0.9470 -5.2092 24 6 5.7313 -0.5079 -6.0183 25 6 6.1031 -1.2517 -7.0979 26 6 5.4467 -2.4411 -7.4069 27 6 4.4151 -2.8960 -6.6424 28 6 4.0025 -2.1583 -5.5220 29 7 2.9942 -2.5692 -4.7441 30 7 2.6190 -1.8979 -3.7154 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5095 -0.8925 34 1 1.6080 -0.2810 2.1363 35 1 3.1301 -0.6522 1.2902 36 1 2.8594 -2.5562 2.8709 37 1 3.3805 -3.4234 4.3128 38 1 3.3640 -2.7474 -0.0087 39 1 2.0124 -3.9021 -0.1085 40 1 2.2945 -2.5247 -2.2003 41 1 0.6992 -2.3159 -1.4360 42 1 4.7192 0.7057 -3.7986 43 1 6.2478 0.4120 -5.7872 44 1 6.9175 -0.9147 -7.7222 45 1 5.7611 -3.0124 -8.2679 46 1 3.9178 -3.8205 -6.8965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044705854.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:12 Heat of formation + Delta-G solvation = 52.171692 kcal Electronic energy + Delta-G solvation = -29228.877255 eV Core-core repulsion = 25311.945907 eV Total energy + Delta-G solvation = -3916.931348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.68298 -41.34269 -39.22314 -38.77873 -36.59518 -34.94398 -34.21488 -33.57570 -32.50006 -31.53061 -30.82727 -28.64288 -26.58909 -26.42202 -25.68796 -24.53822 -23.66219 -23.35974 -22.34630 -20.25217 -19.82489 -19.47042 -19.19566 -17.91170 -17.68935 -16.93512 -16.85417 -16.42645 -16.24991 -15.82007 -15.69140 -15.54493 -15.50811 -15.18133 -15.00883 -14.68858 -14.52068 -14.19017 -13.94914 -13.77908 -13.45025 -13.10097 -13.03953 -13.00415 -12.72934 -12.61275 -12.40114 -12.27759 -12.14975 -11.97464 -11.92039 -11.85915 -11.53928 -11.14913 -11.08094 -11.01125 -10.71784 -10.38521 -9.87546 -9.47080 -9.11606 -8.38369 -5.32282 -1.20571 -0.80232 0.61279 1.15495 1.58009 1.64685 1.68716 1.82680 1.92583 2.59375 2.71252 2.76805 3.10870 3.17227 3.36816 3.40747 3.55019 3.63221 3.68766 3.77228 3.96831 4.03552 4.10463 4.14150 4.15151 4.25068 4.38407 4.42694 4.44884 4.47811 4.57470 4.63480 4.72868 4.87422 4.89379 4.90761 4.94729 5.01151 5.09211 5.16019 5.20353 5.23078 5.30729 5.40392 5.52280 5.61728 5.68256 6.16123 6.49681 6.76542 7.09260 7.29019 7.99261 8.11842 9.13559 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.002715 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.520214 B =10309.477563 C =11450.016497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.099 0.901 4 C -0.123 4.123 5 C 0.181 3.819 6 H 0.053 0.947 7 N -0.749 5.749 8 C -0.323 4.323 9 H 0.068 0.932 10 C -0.108 4.108 11 N -0.979 5.979 12 Si 1.128 2.872 13 H -0.286 1.286 14 H -0.271 1.271 15 H -0.294 1.294 16 C -0.138 4.138 17 C 0.095 3.905 18 N -0.579 5.579 19 C 0.576 3.424 20 O -0.562 6.562 21 C -0.030 4.030 22 C -0.027 4.027 23 C -0.082 4.082 24 C -0.101 4.101 25 C -0.082 4.082 26 C -0.071 4.071 27 C -0.100 4.100 28 C 0.054 3.946 29 N -0.230 5.230 30 N -0.206 5.206 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.357 0.643 37 H 0.243 0.757 38 H 0.037 0.963 39 H 0.060 0.940 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.179 0.821 43 H 0.167 0.833 44 H 0.177 0.823 45 H 0.176 0.824 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 8.675 -29.199 30.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 H 0.117 0.883 4 C -0.162 4.162 5 C 0.072 3.928 6 H 0.071 0.929 7 N -0.390 5.390 8 C -0.454 4.454 9 H 0.086 0.914 10 C -0.298 4.298 11 N -0.627 5.627 12 Si 0.954 3.046 13 H -0.213 1.213 14 H -0.196 1.196 15 H -0.221 1.221 16 C -0.179 4.179 17 C -0.029 4.029 18 N -0.309 5.309 19 C 0.363 3.637 20 O -0.441 6.441 21 C -0.163 4.163 22 C -0.057 4.057 23 C -0.091 4.091 24 C -0.120 4.120 25 C -0.101 4.101 26 C -0.091 4.091 27 C -0.121 4.121 28 C -0.074 4.074 29 N -0.085 5.085 30 N -0.063 5.063 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.188 0.812 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.147 0.853 41 H 0.098 0.902 42 H 0.197 0.803 43 H 0.184 0.816 44 H 0.194 0.806 45 H 0.194 0.806 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.099 6.986 -27.743 28.901 hybrid contribution 1.268 2.128 -0.565 2.540 sum 5.366 9.114 -28.308 30.219 Atomic orbital electron populations 1.22095 0.93017 1.02921 1.03164 1.21257 0.95570 0.96591 0.82466 0.88255 1.22087 1.00547 0.95697 0.97835 1.20361 0.96872 0.90139 0.85382 0.92872 1.42675 1.37449 1.29837 1.29037 1.20384 1.12139 1.03365 1.09556 0.91417 1.27173 0.99865 1.07319 0.95474 1.70963 1.24044 1.24891 1.42802 0.82609 0.74746 0.71882 0.75409 1.21336 1.19645 1.22059 1.22459 0.99523 1.00046 0.95885 1.22663 1.02656 0.77997 0.99557 1.48154 1.52838 1.10271 1.19598 1.17767 0.77864 0.85942 0.82152 1.90747 1.59529 1.14712 1.79161 1.22349 0.99132 0.95852 0.98965 1.22753 0.92283 0.99508 0.91122 1.19078 0.98693 0.94931 0.96376 1.21422 0.94393 1.01726 0.94419 1.21692 0.99295 0.93340 0.95798 1.21647 0.92555 0.95737 0.99150 1.21110 0.98284 1.00516 0.92204 1.20865 0.94204 0.94575 0.97716 1.73796 1.10894 1.24452 0.99312 1.73077 1.22681 1.03342 1.07199 0.92147 0.89844 0.91757 0.90263 0.93065 0.81167 0.94671 0.94398 0.92178 0.85330 0.90200 0.80323 0.81599 0.80579 0.80613 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.03 71.98 0.65 -3.39 16 2 C 0.14 4.36 3.21 44.98 0.14 4.51 16 3 H 0.10 3.02 7.00 -2.39 -0.02 3.00 16 4 C -0.12 -4.29 5.02 30.67 0.15 -4.13 16 5 C 0.18 7.37 2.52 45.02 0.11 7.49 16 6 H 0.05 2.19 6.43 -2.39 -0.02 2.17 16 7 N -0.75 -38.61 5.12 -322.83 -1.65 -40.27 16 8 C -0.32 -18.36 9.93 84.03 0.83 -17.52 16 9 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 10 C -0.11 -6.35 5.50 84.86 0.47 -5.88 16 11 N -0.98 -62.54 13.70 21.65 0.30 -62.24 16 12 Si 1.13 52.97 29.92 68.60 2.05 55.02 16 13 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 16 C -0.14 -5.29 5.66 30.67 0.17 -5.11 16 17 C 0.09 3.02 5.57 86.36 0.48 3.50 16 18 N -0.58 -18.21 2.68 -798.31 -2.14 -20.35 16 19 C 0.58 18.33 7.60 86.81 0.66 18.99 16 20 O -0.56 -19.49 15.99 -3.87 -0.06 -19.55 16 21 C -0.03 -0.86 6.50 41.61 0.27 -0.59 16 22 C -0.03 -0.60 9.51 23.03 0.22 -0.38 16 23 C -0.08 -1.51 5.75 -21.28 -0.12 -1.63 16 24 C -0.10 -0.98 9.81 22.30 0.22 -0.76 16 25 C -0.08 -0.41 9.96 22.07 0.22 -0.19 16 26 C -0.07 -0.43 9.94 22.06 0.22 -0.21 16 27 C -0.10 -1.33 10.00 22.31 0.22 -1.10 16 28 C 0.05 1.14 6.69 40.27 0.27 1.41 16 29 N -0.23 -6.26 11.55 -51.93 -0.60 -6.86 16 30 N -0.21 -6.07 7.55 -48.75 -0.37 -6.44 16 31 H 0.06 1.67 5.73 -2.39 -0.01 1.66 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.36 19.43 6.63 -92.71 -0.61 18.81 16 37 H 0.24 15.53 6.77 -92.70 -0.63 14.90 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.13 4.15 4.00 -86.08 -0.34 3.81 16 41 H 0.08 2.41 7.51 -2.39 -0.02 2.39 16 42 H 0.18 3.19 7.85 -2.91 -0.02 3.17 16 43 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 44 H 0.18 -0.43 8.06 -2.91 -0.02 -0.45 16 45 H 0.18 -0.21 8.06 -2.91 -0.02 -0.23 16 46 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -77.64 370.84 2.94 -74.71 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.21 Total: 31.00 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.19 Total: -5.01 kcal Atomic # 7 Polarization: -131.69 SS G_CDS: -4.46 Total: -136.16 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.06 Total: -19.55 kcal Atomic # 14 Polarization: 52.97 SS G_CDS: 2.05 Total: 55.02 kcal Total: -77.64 2.94 -74.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044705854.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.879 kcal (2) G-P(sol) polarization free energy of solvation -77.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds