Wall clock time and date at job start Sat Apr 11 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58707 * 2 1 4 4 C 1.53194 * 109.58575 * 120.42984 * 2 1 3 5 5 C 1.53046 * 109.31030 * 174.42088 * 4 2 1 6 6 H 1.09004 * 109.45909 * 58.65293 * 5 4 2 7 7 N 1.46494 * 109.45725 * 178.61215 * 5 4 2 8 8 C 1.36943 * 119.99721 * 204.99692 * 7 5 4 9 9 H 1.08003 * 120.00007 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99884 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00026 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99903 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47196 * 89.99755 * 12 10 8 14 14 H 1.48502 * 109.46691 * 209.99632 * 12 10 8 15 15 H 1.48500 * 109.47083 * 329.99263 * 12 10 8 16 16 C 1.53035 * 109.53699 * 298.63422 * 5 4 2 17 17 C 1.52764 * 109.38517 * 61.24244 * 16 5 4 18 18 N 1.46930 * 109.58215 * 239.71607 * 2 1 3 19 19 C 1.34779 * 120.63296 * 6.58221 * 18 2 1 20 20 O 1.21542 * 119.99956 * 0.67588 * 19 18 2 21 21 C 1.47922 * 119.99847 * 180.67527 * 19 18 2 22 22 C 1.38929 * 119.84253 * 157.71316 * 21 19 18 23 23 C 1.40654 * 117.38700 * 180.22673 * 22 21 19 24 24 C 1.40256 * 122.04277 * 179.74974 * 23 22 21 25 25 C 1.36268 * 119.47496 * 180.02562 * 24 23 22 26 26 C 1.39327 * 120.87323 * 359.97357 * 25 24 23 27 27 C 1.36233 * 121.15611 * 359.55202 * 26 25 24 28 28 C 1.40333 * 119.67890 * 0.68778 * 27 26 25 29 29 N 1.33812 * 121.61904 * 179.26800 * 28 27 26 30 30 N 1.28437 * 121.68963 * 180.02562 * 29 28 27 31 31 H 1.09002 * 109.46965 * 174.01439 * 1 2 3 32 32 H 1.09004 * 109.47196 * 294.01071 * 1 2 3 33 33 H 1.08994 * 109.47208 * 54.01354 * 1 2 3 34 34 H 1.08994 * 109.49695 * 294.37070 * 4 2 1 35 35 H 1.09000 * 109.49798 * 54.44137 * 4 2 1 36 36 H 0.97002 * 120.00377 * 25.00025 * 7 5 4 37 37 H 0.96996 * 119.99992 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.49891 * 181.31341 * 16 5 4 39 39 H 1.09001 * 109.49961 * 301.37950 * 16 5 4 40 40 H 1.08998 * 109.51211 * 185.70751 * 17 16 5 41 41 H 1.08999 * 109.43430 * 65.42289 * 17 16 5 42 42 H 1.07998 * 121.31135 * 359.95397 * 22 21 19 43 43 H 1.08002 * 120.26085 * 0.02562 * 24 23 22 44 44 H 1.07997 * 119.56485 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.41794 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.15595 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5676 -0.8495 1.1690 6 1 4.0062 0.1459 1.0994 7 7 4.0652 -1.5188 2.3734 8 6 5.3498 -1.3023 2.7956 9 1 5.9958 -0.6379 2.2410 10 6 5.8212 -1.9361 3.9371 11 7 7.0560 -1.7284 4.3427 12 14 4.7035 -3.0847 4.8968 13 1 4.8456 -4.4665 4.3719 14 1 5.0827 -3.0591 6.3324 15 1 3.2939 -2.6414 4.7492 16 6 3.9569 -1.6657 -0.0656 17 6 3.4644 -0.9502 -1.3223 18 7 2.0225 -0.6981 -1.1954 19 6 1.1672 -1.1043 -2.1546 20 8 -0.0226 -0.8832 -2.0413 21 6 1.6766 -1.8191 -3.3453 22 6 0.8225 -2.6290 -4.0833 23 6 1.3622 -3.2882 -5.2025 24 6 0.5895 -4.1329 -6.0128 25 6 1.1664 -4.7458 -7.0845 26 6 2.5117 -4.5437 -7.3850 27 6 3.2881 -3.7223 -6.6244 28 6 2.7322 -3.0770 -5.5092 29 7 3.4626 -2.2736 -4.7272 30 7 2.9553 -1.6826 -3.7059 31 1 -0.3633 -1.0221 -0.1072 32 1 -0.3634 0.4182 0.9388 33 1 -0.3633 0.6038 -0.8315 34 1 1.7661 -0.1696 2.1366 35 1 1.6026 -1.7268 1.2894 36 1 3.4849 -2.1153 2.8717 37 1 7.3856 -2.1716 5.1401 38 1 5.0412 -1.7695 -0.1061 39 1 3.4988 -2.6531 -0.0084 40 1 3.6503 -1.5770 -2.1945 41 1 3.9928 -0.0031 -1.4311 42 1 -0.2141 -2.7513 -3.8060 43 1 -0.4544 -4.2963 -5.7891 44 1 0.5729 -5.3969 -7.7091 45 1 2.9448 -5.0410 -8.2404 46 1 4.3294 -3.5776 -6.8719 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044705855.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:19 Heat of formation + Delta-G solvation = 92.216331 kcal Electronic energy + Delta-G solvation = -29276.172720 eV Core-core repulsion = 25360.977838 eV Total energy + Delta-G solvation = -3915.194882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.84598 -40.33825 -38.21916 -37.53975 -34.69981 -34.19216 -33.05867 -31.95305 -31.69902 -30.78281 -29.74812 -27.21857 -25.82286 -25.38475 -24.20676 -22.92107 -22.59466 -22.17214 -20.47319 -19.76098 -19.09681 -18.23132 -17.51972 -17.02500 -16.32742 -15.97935 -15.93708 -15.15402 -14.92373 -14.83551 -14.76834 -14.32877 -14.12830 -13.93715 -13.76014 -13.34025 -13.06996 -12.89959 -12.75191 -12.59680 -12.46151 -12.25362 -12.12884 -11.86417 -11.68522 -11.17228 -11.11295 -11.00676 -10.88258 -10.77241 -10.49733 -10.27795 -9.97574 -9.89984 -9.67372 -9.58213 -9.21224 -8.90127 -8.84186 -8.47235 -7.25776 -5.76093 -3.11535 -0.48985 -0.01665 1.25770 2.01625 2.77794 2.86094 3.37959 3.41300 3.45787 3.45961 3.57668 3.84230 4.01650 4.07694 4.27318 4.48715 4.53856 4.59885 4.64210 4.97855 5.00153 5.08273 5.18429 5.21966 5.28758 5.35903 5.40362 5.53032 5.59262 5.64147 5.66745 5.72286 5.79348 5.82639 5.93320 6.00593 6.06382 6.14447 6.29947 6.32449 6.34994 6.40734 6.48460 6.68474 6.86184 7.00035 7.40960 7.98227 8.00303 8.19939 8.43103 9.21407 9.94176 10.14141 11.42251 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014325 B = 0.002818 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.120612 B = 9934.407552 C =10972.773820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.145 3.855 3 H 0.078 0.922 4 C -0.138 4.138 5 C 0.182 3.818 6 H 0.058 0.942 7 N -0.748 5.748 8 C -0.242 4.242 9 H 0.091 0.909 10 C 0.004 3.996 11 N -0.934 5.934 12 Si 0.883 3.117 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.151 4.151 17 C 0.081 3.919 18 N -0.577 5.577 19 C 0.574 3.426 20 O -0.533 6.533 21 C -0.003 4.003 22 C -0.032 4.032 23 C -0.073 4.073 24 C -0.096 4.096 25 C -0.097 4.097 26 C -0.094 4.094 27 C -0.078 4.078 28 C 0.072 3.928 29 N -0.205 5.205 30 N -0.181 5.181 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.126 0.874 41 H 0.073 0.927 42 H 0.165 0.835 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 -4.385 -25.249 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.042 3.958 3 H 0.096 0.904 4 C -0.177 4.177 5 C 0.073 3.927 6 H 0.076 0.924 7 N -0.390 5.390 8 C -0.372 4.372 9 H 0.109 0.891 10 C -0.192 4.192 11 N -0.582 5.582 12 Si 0.714 3.286 13 H -0.212 1.212 14 H -0.218 1.218 15 H -0.203 1.203 16 C -0.192 4.192 17 C -0.042 4.042 18 N -0.308 5.308 19 C 0.359 3.641 20 O -0.410 6.410 21 C -0.136 4.136 22 C -0.062 4.062 23 C -0.081 4.081 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.099 4.099 28 C -0.055 4.055 29 N -0.060 5.060 30 N -0.038 5.038 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.143 0.857 41 H 0.091 0.909 42 H 0.182 0.818 43 H 0.158 0.842 44 H 0.154 0.846 45 H 0.156 0.844 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.982 -3.474 -24.765 28.651 hybrid contribution -1.807 -1.623 0.589 2.499 sum -15.789 -5.096 -24.176 29.321 Atomic orbital electron populations 1.22212 0.92780 1.03622 1.00740 1.21405 0.95485 0.95454 0.83427 0.90398 1.22339 0.97707 1.00873 0.96775 1.20180 0.90616 0.95510 0.86442 0.92433 1.42795 1.13054 1.55011 1.28153 1.19083 0.87459 1.23258 1.07351 0.89105 1.24668 0.96096 1.00164 0.98228 1.69699 1.15053 1.47181 1.26244 0.86562 0.80562 0.81583 0.79894 1.21207 1.21780 1.20339 1.22575 1.02302 0.99503 0.94819 1.22763 0.77943 1.02313 1.01213 1.48135 1.08499 1.54933 1.19201 1.17562 0.85726 0.79107 0.81698 1.90853 1.15331 1.57088 1.77776 1.22733 0.92337 0.99757 0.98745 1.22515 1.01466 0.91041 0.91181 1.18818 0.94471 0.98470 0.96382 1.21042 1.00149 0.95715 0.94537 1.21139 0.95252 0.98514 0.96739 1.21124 0.93858 0.96960 0.99488 1.20854 1.01203 0.95294 0.92506 1.20430 0.91266 0.96846 0.97007 1.73938 1.29242 1.03961 0.98846 1.73310 1.09697 1.14551 1.06263 0.91436 0.93549 0.91004 0.90369 0.91935 0.80723 0.93089 0.89989 0.92802 0.85745 0.90909 0.81782 0.84178 0.84623 0.84402 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.60 37.16 0.28 -1.56 16 2 C 0.14 2.07 3.50 -67.59 -0.24 1.83 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.21 4.84 -26.61 -0.13 -2.34 16 5 C 0.18 3.46 2.73 -67.89 -0.19 3.28 16 6 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 7 N -0.75 -17.62 4.92 -53.38 -0.26 -17.88 16 8 C -0.24 -6.76 10.41 -15.06 -0.16 -6.92 16 9 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 10 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 11 N -0.93 -29.38 13.97 55.49 0.78 -28.60 16 12 Si 0.88 22.27 27.74 -169.99 -4.71 17.56 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 15 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 16 C -0.15 -2.65 5.64 -26.83 -0.15 -2.80 16 17 C 0.08 1.21 5.97 -3.93 -0.02 1.18 16 18 N -0.58 -8.45 2.98 -166.55 -0.50 -8.95 16 19 C 0.57 8.34 7.48 -12.29 -0.09 8.24 16 20 O -0.53 -8.20 12.01 5.33 0.06 -8.13 16 21 C 0.00 -0.04 6.51 -82.90 -0.54 -0.58 16 22 C -0.03 -0.34 9.51 -38.41 -0.37 -0.70 16 23 C -0.07 -0.69 5.75 -106.80 -0.61 -1.31 16 24 C -0.10 -0.60 9.81 -39.53 -0.39 -0.99 16 25 C -0.10 -0.47 9.96 -39.89 -0.40 -0.86 16 26 C -0.09 -0.48 9.94 -39.90 -0.40 -0.88 16 27 C -0.08 -0.58 10.00 -39.52 -0.40 -0.98 16 28 C 0.07 0.77 6.69 -84.79 -0.57 0.20 16 29 N -0.20 -2.67 11.55 32.23 0.37 -2.30 16 30 N -0.18 -2.50 7.54 33.24 0.25 -2.25 16 31 H 0.07 0.99 6.76 -51.93 -0.35 0.64 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.01 6.72 -51.93 -0.35 0.66 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.36 8.43 5.66 -40.82 -0.23 8.20 16 37 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.13 1.86 3.97 -119.44 -0.47 1.38 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.16 1.41 7.85 -52.49 -0.41 1.00 16 43 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.14 0.28 8.06 -52.49 -0.42 -0.15 16 45 H 0.14 0.32 8.06 -52.48 -0.42 -0.11 16 46 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -33.66 367.89 -9.40 -43.06 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.48 Total: 7.11 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -4.45 Total: -5.16 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.64 Total: -59.98 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.06 Total: -8.13 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.66 -9.40 -43.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044705855.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.275 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds