Wall clock time and date at job start Sat Apr 11 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58707 * 2 1 4 4 C 1.53194 * 109.58575 * 120.42984 * 2 1 3 5 5 C 1.53046 * 109.31030 * 174.42088 * 4 2 1 6 6 H 1.09004 * 109.45909 * 58.65293 * 5 4 2 7 7 N 1.46494 * 109.45725 * 178.61215 * 5 4 2 8 8 C 1.36943 * 119.99721 * 204.99692 * 7 5 4 9 9 H 1.08003 * 120.00007 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99884 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00026 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99903 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47196 * 89.99755 * 12 10 8 14 14 H 1.48502 * 109.46691 * 209.99632 * 12 10 8 15 15 H 1.48500 * 109.47083 * 329.99263 * 12 10 8 16 16 C 1.53035 * 109.53699 * 298.63422 * 5 4 2 17 17 C 1.52764 * 109.38517 * 61.24244 * 16 5 4 18 18 N 1.46930 * 109.58215 * 239.71607 * 2 1 3 19 19 C 1.34779 * 120.63296 * 6.58221 * 18 2 1 20 20 O 1.21542 * 119.99956 * 0.67588 * 19 18 2 21 21 C 1.47922 * 119.99847 * 180.67527 * 19 18 2 22 22 C 1.38929 * 119.84253 * 157.71316 * 21 19 18 23 23 C 1.40654 * 117.38700 * 180.22673 * 22 21 19 24 24 C 1.40256 * 122.04277 * 179.74974 * 23 22 21 25 25 C 1.36268 * 119.47496 * 180.02562 * 24 23 22 26 26 C 1.39327 * 120.87323 * 359.97357 * 25 24 23 27 27 C 1.36233 * 121.15611 * 359.55202 * 26 25 24 28 28 C 1.40333 * 119.67890 * 0.68778 * 27 26 25 29 29 N 1.33812 * 121.61904 * 179.26800 * 28 27 26 30 30 N 1.28437 * 121.68963 * 180.02562 * 29 28 27 31 31 H 1.09002 * 109.46965 * 174.01439 * 1 2 3 32 32 H 1.09004 * 109.47196 * 294.01071 * 1 2 3 33 33 H 1.08994 * 109.47208 * 54.01354 * 1 2 3 34 34 H 1.08994 * 109.49695 * 294.37070 * 4 2 1 35 35 H 1.09000 * 109.49798 * 54.44137 * 4 2 1 36 36 H 0.97002 * 120.00377 * 25.00025 * 7 5 4 37 37 H 0.96996 * 119.99992 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.49891 * 181.31341 * 16 5 4 39 39 H 1.09001 * 109.49961 * 301.37950 * 16 5 4 40 40 H 1.08998 * 109.51211 * 185.70751 * 17 16 5 41 41 H 1.08999 * 109.43430 * 65.42289 * 17 16 5 42 42 H 1.07998 * 121.31135 * 359.95397 * 22 21 19 43 43 H 1.08002 * 120.26085 * 0.02562 * 24 23 22 44 44 H 1.07997 * 119.56485 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.41794 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.15595 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5676 -0.8495 1.1690 6 1 4.0062 0.1459 1.0994 7 7 4.0652 -1.5188 2.3734 8 6 5.3498 -1.3023 2.7956 9 1 5.9958 -0.6379 2.2410 10 6 5.8212 -1.9361 3.9371 11 7 7.0560 -1.7284 4.3427 12 14 4.7035 -3.0847 4.8968 13 1 4.8456 -4.4665 4.3719 14 1 5.0827 -3.0591 6.3324 15 1 3.2939 -2.6414 4.7492 16 6 3.9569 -1.6657 -0.0656 17 6 3.4644 -0.9502 -1.3223 18 7 2.0225 -0.6981 -1.1954 19 6 1.1672 -1.1043 -2.1546 20 8 -0.0226 -0.8832 -2.0413 21 6 1.6766 -1.8191 -3.3453 22 6 0.8225 -2.6290 -4.0833 23 6 1.3622 -3.2882 -5.2025 24 6 0.5895 -4.1329 -6.0128 25 6 1.1664 -4.7458 -7.0845 26 6 2.5117 -4.5437 -7.3850 27 6 3.2881 -3.7223 -6.6244 28 6 2.7322 -3.0770 -5.5092 29 7 3.4626 -2.2736 -4.7272 30 7 2.9553 -1.6826 -3.7059 31 1 -0.3633 -1.0221 -0.1072 32 1 -0.3634 0.4182 0.9388 33 1 -0.3633 0.6038 -0.8315 34 1 1.7661 -0.1696 2.1366 35 1 1.6026 -1.7268 1.2894 36 1 3.4849 -2.1153 2.8717 37 1 7.3856 -2.1716 5.1401 38 1 5.0412 -1.7695 -0.1061 39 1 3.4988 -2.6531 -0.0084 40 1 3.6503 -1.5770 -2.1945 41 1 3.9928 -0.0031 -1.4311 42 1 -0.2141 -2.7513 -3.8060 43 1 -0.4544 -4.2963 -5.7891 44 1 0.5729 -5.3969 -7.7091 45 1 2.9448 -5.0410 -8.2404 46 1 4.3294 -3.5776 -6.8719 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044705855.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:17 Heat of formation + Delta-G solvation = 70.657881 kcal Electronic energy + Delta-G solvation = -29277.107565 eV Core-core repulsion = 25360.977838 eV Total energy + Delta-G solvation = -3916.129727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.66017 -41.39941 -39.01428 -38.75214 -36.36866 -35.00207 -34.14599 -33.78642 -32.51511 -31.68814 -31.28213 -28.52452 -26.56245 -26.30794 -25.74098 -24.25639 -23.55746 -23.22395 -21.85581 -21.04550 -19.78291 -19.68079 -19.01641 -17.86544 -17.12777 -17.07210 -16.90598 -16.74464 -16.01673 -15.79911 -15.66892 -15.63906 -15.28498 -15.16542 -14.74669 -14.69108 -14.46356 -14.19367 -13.96403 -13.69836 -13.47325 -13.26501 -13.13872 -12.98272 -12.94206 -12.67482 -12.63099 -12.23392 -12.07933 -12.06030 -11.90172 -11.82320 -11.68909 -11.41040 -11.03812 -10.72897 -10.46342 -10.25741 -9.72782 -9.43616 -9.30791 -8.02068 -5.35521 -1.16520 -0.75677 0.64536 1.21527 1.36618 1.39383 1.46876 1.72320 1.99226 2.47904 2.65405 2.80036 3.15439 3.21664 3.29034 3.41161 3.46820 3.67013 3.72485 3.83299 4.02726 4.07180 4.12908 4.17603 4.23658 4.30571 4.41973 4.49730 4.52576 4.55882 4.62658 4.67717 4.83727 4.91038 4.96137 4.96900 5.04791 5.10575 5.18500 5.21736 5.25445 5.32930 5.37036 5.41819 5.65932 5.70449 5.77772 6.21817 6.25020 6.88921 7.07360 7.34187 7.83132 8.02758 9.19484 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014325 B = 0.002818 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.120612 B = 9934.407552 C =10972.773820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.146 3.854 3 H 0.087 0.913 4 C -0.126 4.126 5 C 0.177 3.823 6 H 0.048 0.952 7 N -0.751 5.751 8 C -0.226 4.226 9 H 0.058 0.942 10 C -0.065 4.065 11 N -0.984 5.984 12 Si 0.953 3.047 13 H -0.282 1.282 14 H -0.296 1.296 15 H -0.251 1.251 16 C -0.140 4.140 17 C 0.092 3.908 18 N -0.582 5.582 19 C 0.576 3.424 20 O -0.544 6.544 21 C -0.032 4.032 22 C -0.026 4.026 23 C -0.083 4.083 24 C -0.100 4.100 25 C -0.084 4.084 26 C -0.072 4.072 27 C -0.102 4.102 28 C 0.054 3.946 29 N -0.233 5.233 30 N -0.208 5.208 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.364 0.636 37 H 0.257 0.743 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.131 0.869 41 H 0.075 0.925 42 H 0.182 0.818 43 H 0.167 0.833 44 H 0.176 0.824 45 H 0.175 0.825 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.130 -6.402 -27.771 33.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.043 3.957 3 H 0.105 0.895 4 C -0.165 4.165 5 C 0.069 3.931 6 H 0.067 0.933 7 N -0.393 5.393 8 C -0.357 4.357 9 H 0.076 0.924 10 C -0.256 4.256 11 N -0.635 5.635 12 Si 0.781 3.219 13 H -0.209 1.209 14 H -0.223 1.223 15 H -0.176 1.176 16 C -0.180 4.180 17 C -0.031 4.031 18 N -0.313 5.313 19 C 0.362 3.638 20 O -0.423 6.423 21 C -0.165 4.165 22 C -0.055 4.055 23 C -0.092 4.092 24 C -0.119 4.119 25 C -0.103 4.103 26 C -0.092 4.092 27 C -0.123 4.123 28 C -0.074 4.074 29 N -0.088 5.088 30 N -0.065 5.065 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.197 0.803 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.148 0.852 41 H 0.094 0.906 42 H 0.199 0.801 43 H 0.185 0.815 44 H 0.193 0.807 45 H 0.192 0.808 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.178 -5.473 -27.332 32.743 hybrid contribution -0.836 -1.076 1.055 1.724 sum -18.014 -6.549 -26.277 32.525 Atomic orbital electron populations 1.22072 0.91700 1.02928 1.01425 1.21437 0.96186 0.95565 0.82515 0.89520 1.22202 0.94841 1.01301 0.98116 1.20389 0.92830 0.94705 0.85213 0.93349 1.42803 1.11502 1.55464 1.29561 1.19027 0.88756 1.21438 1.06441 0.92362 1.25473 0.97698 1.02632 0.99789 1.69880 1.17363 1.49159 1.27082 0.85432 0.79719 0.79128 0.77635 1.20869 1.22262 1.17603 1.22372 1.00793 0.99326 0.95558 1.22605 0.78414 1.02251 0.99841 1.48126 1.08174 1.55347 1.19611 1.17740 0.85502 0.78648 0.81901 1.90832 1.15621 1.57523 1.78279 1.22575 0.92947 1.01698 0.99253 1.22748 1.01799 0.90036 0.90944 1.19092 0.94382 0.99090 0.96611 1.21420 1.01256 0.94834 0.94347 1.21678 0.95268 0.97413 0.95949 1.21633 0.93840 0.94639 0.99102 1.21097 1.02218 0.96503 0.92459 1.20855 0.92086 0.96874 0.97602 1.73802 1.30228 1.05245 0.99503 1.73081 1.10299 1.15743 1.07355 0.92524 0.91850 0.91497 0.89660 0.91965 0.80314 0.93408 0.92298 0.93297 0.85218 0.90647 0.80096 0.81512 0.80671 0.80792 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 7.60 71.98 0.55 -2.64 16 2 C 0.15 4.04 3.50 44.98 0.16 4.20 16 3 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.13 -3.91 4.84 30.67 0.15 -3.77 16 5 C 0.18 6.79 2.73 45.02 0.12 6.91 16 6 H 0.05 1.95 8.08 -2.38 -0.02 1.93 16 7 N -0.75 -35.48 4.92 -322.81 -1.59 -37.07 16 8 C -0.23 -12.97 10.41 84.03 0.87 -12.10 16 9 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 10 C -0.06 -3.86 5.50 84.86 0.47 -3.40 16 11 N -0.98 -63.91 13.97 21.65 0.30 -63.60 16 12 Si 0.95 46.31 27.74 68.60 1.90 48.21 16 13 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 14 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 15 H -0.25 -11.02 6.52 99.48 0.65 -10.37 16 16 C -0.14 -5.06 5.64 30.53 0.17 -4.88 16 17 C 0.09 2.85 5.97 86.22 0.51 3.36 16 18 N -0.58 -17.09 2.98 -799.12 -2.38 -19.47 16 19 C 0.58 16.73 7.48 86.81 0.65 17.38 16 20 O -0.54 -16.45 12.01 -3.85 -0.05 -16.49 16 21 C -0.03 -0.85 6.51 41.61 0.27 -0.57 16 22 C -0.03 -0.52 9.51 23.03 0.22 -0.30 16 23 C -0.08 -1.46 5.75 -21.28 -0.12 -1.58 16 24 C -0.10 -0.90 9.81 22.30 0.22 -0.68 16 25 C -0.08 -0.39 9.96 22.07 0.22 -0.17 16 26 C -0.07 -0.44 9.94 22.06 0.22 -0.22 16 27 C -0.10 -1.36 10.00 22.31 0.22 -1.13 16 28 C 0.05 1.11 6.69 40.28 0.27 1.38 16 29 N -0.23 -6.30 11.55 -51.93 -0.60 -6.90 16 30 N -0.21 -5.98 7.54 -48.75 -0.37 -6.35 16 31 H 0.06 1.58 6.76 -2.39 -0.02 1.57 16 32 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.07 1.80 6.72 -2.39 -0.02 1.79 16 34 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.36 16.61 5.66 -92.71 -0.52 16.09 16 37 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.13 4.06 3.97 -89.72 -0.36 3.71 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.18 2.84 7.85 -2.91 -0.02 2.82 16 43 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 44 H 0.18 -0.46 8.06 -2.91 -0.02 -0.49 16 45 H 0.17 -0.17 8.06 -2.91 -0.02 -0.19 16 46 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -76.62 367.89 2.48 -74.15 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.08 Total: 25.73 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 5.17 Total: 1.79 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -4.63 Total: -133.39 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.05 Total: -16.49 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.21 kcal Total: -76.62 2.48 -74.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044705855.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.804 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds