Wall clock time and date at job start Sat Apr 11 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.70291 * 2 1 4 4 C 1.52765 * 109.50945 * 239.88785 * 2 1 3 5 5 C 1.53036 * 109.38506 * 185.70290 * 4 2 1 6 6 H 1.08999 * 109.46297 * 301.21830 * 5 4 2 7 7 N 1.46495 * 109.44796 * 181.25510 * 5 4 2 8 8 C 1.36944 * 120.00325 * 154.94124 * 7 5 4 9 9 H 1.08007 * 119.99550 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00573 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00114 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99733 * 359.97438 * 10 8 7 13 13 H 1.48508 * 109.47241 * 89.99881 * 12 10 8 14 14 H 1.48498 * 109.47055 * 209.99853 * 12 10 8 15 15 H 1.48505 * 109.47313 * 330.00025 * 12 10 8 16 16 C 1.53035 * 109.53589 * 61.23826 * 5 4 2 17 17 C 1.53191 * 109.31725 * 298.63554 * 16 5 4 18 18 N 1.46919 * 109.59212 * 120.35897 * 2 1 3 19 19 C 1.34778 * 120.62986 * 353.41911 * 18 2 1 20 20 O 1.21552 * 120.00079 * 7.37018 * 19 18 2 21 21 C 1.47925 * 120.00315 * 187.36783 * 19 18 2 22 22 C 1.38937 * 119.84690 * 190.42339 * 21 19 18 23 23 C 1.40642 * 117.38735 * 180.02562 * 22 21 19 24 24 C 1.40259 * 122.03132 * 179.97438 * 23 22 21 25 25 C 1.36270 * 119.47116 * 180.02562 * 24 23 22 26 26 C 1.39326 * 120.87236 * 359.97438 * 25 24 23 27 27 C 1.36222 * 121.16172 * 359.97438 * 26 25 24 28 28 C 1.40337 * 119.68464 * 0.03888 * 27 26 25 29 29 N 1.33812 * 121.63437 * 179.97438 * 28 27 26 30 30 N 1.28435 * 121.68843 * 180.02562 * 29 28 27 31 31 H 1.09003 * 109.47333 * 302.08136 * 1 2 3 32 32 H 1.08997 * 109.47766 * 62.08183 * 1 2 3 33 33 H 1.09004 * 109.46966 * 182.08563 * 1 2 3 34 34 H 1.09004 * 109.56097 * 65.66697 * 4 2 1 35 35 H 1.09001 * 109.38747 * 305.63473 * 4 2 1 36 36 H 0.97000 * 120.00185 * 334.93765 * 7 5 4 37 37 H 0.96999 * 119.99605 * 180.02562 * 11 10 8 38 38 H 1.09004 * 109.49854 * 178.68266 * 16 5 4 39 39 H 1.09000 * 109.49963 * 58.58997 * 16 5 4 40 40 H 1.09004 * 109.58047 * 294.84912 * 17 16 5 41 41 H 1.09001 * 109.70441 * 174.49818 * 17 16 5 42 42 H 1.08003 * 121.30643 * 359.97438 * 22 21 19 43 43 H 1.07997 * 120.25869 * 0.02562 * 24 23 22 44 44 H 1.08000 * 119.56162 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.41805 * 180.02562 * 26 25 24 46 46 H 1.08002 * 120.16438 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7224 -1.2456 5 6 3.5638 -0.8460 -1.1728 6 1 4.0057 0.1477 -1.0997 7 7 4.0573 -1.5120 -2.3807 8 6 5.3415 -1.2970 -2.8050 9 1 5.9903 -0.6362 -2.2492 10 6 5.8094 -1.9284 -3.9492 11 7 7.0435 -1.7214 -4.3571 12 14 4.6875 -3.0719 -4.9100 13 1 3.9526 -2.2943 -5.9398 14 1 5.5013 -4.1235 -5.5710 15 1 3.7166 -3.7070 -3.9829 16 6 3.9522 -1.6685 0.0578 17 6 3.4644 -0.9520 1.3209 18 7 2.0226 -0.6996 1.1943 19 6 1.1675 -1.1071 2.1531 20 8 -0.0317 -1.0185 1.9755 21 6 1.6883 -1.6623 3.4214 22 6 0.8205 -2.2788 4.3143 23 6 1.3707 -2.7878 5.5043 24 6 0.5843 -3.4279 6.4734 25 6 1.1720 -3.9011 7.6081 26 6 2.5420 -3.7578 7.8169 27 6 3.3348 -3.1424 6.8958 28 6 2.7672 -2.6412 5.7143 29 7 3.5091 -2.0295 4.7837 30 7 2.9906 -1.5700 3.7022 31 1 -0.3634 0.5458 0.8707 32 1 -0.3634 0.4811 -0.9080 33 1 -0.3633 -1.0270 0.0374 34 1 1.7631 -0.1563 -2.1350 35 1 1.5963 -1.7168 -1.2945 36 1 3.4746 -2.1052 -2.8800 37 1 7.3703 -2.1623 -5.1569 38 1 5.0363 -1.7760 0.0962 39 1 3.4905 -2.6540 -0.0026 40 1 3.9929 -0.0050 1.4308 41 1 3.6508 -1.5778 2.1937 42 1 -0.2354 -2.3631 4.1032 43 1 -0.4785 -3.5446 6.3214 44 1 0.5677 -4.3939 8.3554 45 1 2.9834 -4.1421 8.7246 46 1 4.3950 -3.0397 7.0744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044705857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:24 Heat of formation + Delta-G solvation = 72.552868 kcal Electronic energy + Delta-G solvation = -29235.919042 eV Core-core repulsion = 25319.871488 eV Total energy + Delta-G solvation = -3916.047554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.65490 -41.39478 -39.00885 -38.74797 -36.36818 -34.99175 -34.16231 -33.77703 -32.50279 -31.67567 -31.27832 -28.50412 -26.56278 -26.30256 -25.73548 -24.24924 -23.54489 -23.22145 -21.84932 -21.06271 -19.77598 -19.68753 -18.99362 -17.85542 -17.06673 -17.02337 -16.92625 -16.74016 -16.01550 -15.84826 -15.66042 -15.64847 -15.31700 -15.15205 -14.74215 -14.69957 -14.44226 -14.20623 -13.92031 -13.68234 -13.47051 -13.27629 -13.14654 -12.97387 -12.94045 -12.68405 -12.61647 -12.19678 -12.14428 -12.06586 -11.87985 -11.82061 -11.64753 -11.38061 -11.02737 -10.67965 -10.44170 -10.27220 -9.70812 -9.43183 -9.30003 -8.01965 -5.35254 -1.16579 -0.77103 0.64459 1.21264 1.36726 1.39509 1.46621 1.74799 2.03855 2.47912 2.64234 2.80713 3.16006 3.21770 3.29024 3.41248 3.47838 3.67653 3.72484 3.83876 4.02726 4.09486 4.13143 4.18005 4.25238 4.32081 4.42346 4.50909 4.53547 4.56496 4.63015 4.68832 4.84791 4.91361 4.97212 4.98256 5.05357 5.11698 5.19012 5.24536 5.26260 5.33221 5.38696 5.42956 5.68034 5.70681 5.78025 6.22040 6.26939 6.89341 7.07503 7.34741 7.83436 8.03030 9.19601 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.002723 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.409121 B =10279.710576 C =11305.107114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.146 3.854 3 H 0.087 0.913 4 C -0.127 4.127 5 C 0.176 3.824 6 H 0.049 0.951 7 N -0.751 5.751 8 C -0.225 4.225 9 H 0.059 0.941 10 C -0.065 4.065 11 N -0.984 5.984 12 Si 0.954 3.046 13 H -0.277 1.277 14 H -0.297 1.297 15 H -0.257 1.257 16 C -0.139 4.139 17 C 0.091 3.909 18 N -0.583 5.583 19 C 0.575 3.425 20 O -0.544 6.544 21 C -0.033 4.033 22 C -0.023 4.023 23 C -0.083 4.083 24 C -0.100 4.100 25 C -0.084 4.084 26 C -0.072 4.072 27 C -0.102 4.102 28 C 0.054 3.946 29 N -0.233 5.233 30 N -0.207 5.207 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.364 0.636 37 H 0.257 0.743 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.182 0.818 43 H 0.168 0.832 44 H 0.176 0.824 45 H 0.175 0.825 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.085 -4.161 29.488 34.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.043 3.957 3 H 0.105 0.895 4 C -0.166 4.166 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.394 5.394 8 C -0.356 4.356 9 H 0.077 0.923 10 C -0.256 4.256 11 N -0.635 5.635 12 Si 0.782 3.218 13 H -0.203 1.203 14 H -0.224 1.224 15 H -0.182 1.182 16 C -0.180 4.180 17 C -0.033 4.033 18 N -0.314 5.314 19 C 0.361 3.639 20 O -0.422 6.422 21 C -0.166 4.166 22 C -0.053 4.053 23 C -0.092 4.092 24 C -0.118 4.118 25 C -0.103 4.103 26 C -0.092 4.092 27 C -0.123 4.123 28 C -0.074 4.074 29 N -0.088 5.088 30 N -0.064 5.064 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.197 0.803 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.154 0.846 42 H 0.200 0.800 43 H 0.185 0.815 44 H 0.193 0.807 45 H 0.192 0.808 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.111 -3.480 28.855 33.727 hybrid contribution -0.873 -0.995 -0.993 1.655 sum -17.984 -4.475 27.863 33.463 Atomic orbital electron populations 1.22085 0.91695 1.02869 1.01459 1.21346 0.96179 0.95509 0.82683 0.89482 1.22135 0.94869 1.01315 0.98237 1.20395 0.92871 0.94722 0.85174 0.93303 1.42817 1.11569 1.55598 1.29379 1.19029 0.88927 1.21528 1.06147 0.92342 1.25468 0.97719 1.02609 0.99806 1.69880 1.17464 1.49285 1.26831 0.85425 0.78541 0.78879 0.78989 1.20284 1.22401 1.18185 1.22449 1.00742 0.99258 0.95585 1.22798 0.78279 1.02273 0.99929 1.48101 1.08275 1.55370 1.19622 1.17756 0.85668 0.77970 0.82489 1.90829 1.14992 1.56665 1.79744 1.22599 0.92570 1.03333 0.98085 1.22763 1.02422 0.89636 0.90492 1.19103 0.94135 0.99760 0.96175 1.21424 1.01359 0.96402 0.92639 1.21681 0.95296 0.96171 0.97141 1.21631 0.93822 0.94339 0.99391 1.21098 1.02307 0.97926 0.90938 1.20863 0.91823 0.97689 0.97018 1.73816 1.31028 1.06758 0.97160 1.73092 1.10540 1.12547 1.10249 0.91656 0.91847 0.92393 0.89572 0.92149 0.80348 0.93411 0.92337 0.93420 0.90878 0.84647 0.80032 0.81497 0.80660 0.80793 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.20 7.58 71.98 0.55 -2.65 16 2 C 0.15 4.07 3.47 44.83 0.16 4.22 16 3 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 4 C -0.13 -4.00 4.81 30.53 0.15 -3.85 16 5 C 0.18 6.85 2.73 45.02 0.12 6.98 16 6 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 7 N -0.75 -35.83 4.92 -322.83 -1.59 -37.42 16 8 C -0.23 -13.02 10.41 84.03 0.87 -12.15 16 9 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 10 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 11 N -0.98 -64.05 13.97 21.65 0.30 -63.75 16 12 Si 0.95 46.64 27.73 68.60 1.90 48.55 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 14 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 15 H -0.26 -11.53 6.52 99.48 0.65 -10.88 16 16 C -0.14 -5.12 5.66 30.67 0.17 -4.95 16 17 C 0.09 2.82 5.88 86.36 0.51 3.32 16 18 N -0.58 -17.23 2.98 -799.13 -2.38 -19.61 16 19 C 0.57 16.70 7.56 86.81 0.66 17.36 16 20 O -0.54 -16.38 11.81 -3.88 -0.05 -16.43 16 21 C -0.03 -0.87 6.63 41.62 0.28 -0.59 16 22 C -0.02 -0.47 9.51 23.02 0.22 -0.25 16 23 C -0.08 -1.43 5.75 -21.28 -0.12 -1.55 16 24 C -0.10 -0.86 9.81 22.30 0.22 -0.64 16 25 C -0.08 -0.36 9.96 22.07 0.22 -0.14 16 26 C -0.07 -0.41 9.94 22.06 0.22 -0.19 16 27 C -0.10 -1.32 10.00 22.31 0.22 -1.10 16 28 C 0.05 1.10 6.69 40.28 0.27 1.37 16 29 N -0.23 -6.23 11.55 -51.92 -0.60 -6.83 16 30 N -0.21 -5.92 7.31 -48.75 -0.36 -6.28 16 31 H 0.06 1.75 6.70 -2.39 -0.02 1.73 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.65 6.80 -2.38 -0.02 1.64 16 34 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.36 16.80 5.66 -92.71 -0.52 16.27 16 37 H 0.26 15.96 8.31 -92.71 -0.77 15.18 16 38 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.14 4.26 4.03 -105.13 -0.42 3.84 16 42 H 0.18 2.84 7.73 -2.91 -0.02 2.81 16 43 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 44 H 0.18 -0.53 8.06 -2.91 -0.02 -0.56 16 45 H 0.17 -0.23 8.06 -2.91 -0.02 -0.25 16 46 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -76.84 367.49 2.42 -74.42 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.02 Total: 25.58 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 5.17 Total: 1.77 kcal Atomic # 7 Polarization: -129.27 SS G_CDS: -4.62 Total: -133.89 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.05 Total: -16.43 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.90 Total: 48.55 kcal Total: -76.84 2.42 -74.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044705857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.968 kcal (2) G-P(sol) polarization free energy of solvation -76.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds