Wall clock time and date at job start Sat Apr 11 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.58643 * 2 1 4 4 C 1.53197 * 109.58469 * 120.27428 * 2 1 3 5 5 C 1.53037 * 109.31121 * 174.56623 * 4 2 1 6 6 H 1.08998 * 109.45930 * 178.63209 * 5 4 2 7 7 N 1.46500 * 109.46429 * 58.65876 * 5 4 2 8 8 C 1.36926 * 120.00091 * 154.96938 * 7 5 4 9 9 H 1.08001 * 120.00731 * 359.72791 * 8 7 5 10 10 C 1.38819 * 119.99979 * 180.02562 * 8 7 5 11 11 N 1.31614 * 120.00122 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99925 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47154 * 89.99528 * 12 10 8 14 14 H 1.48499 * 109.47211 * 210.00106 * 12 10 8 15 15 H 1.48504 * 109.46734 * 329.99837 * 12 10 8 16 16 C 1.53043 * 109.52872 * 298.64047 * 5 4 2 17 17 C 1.53168 * 109.32584 * 61.37463 * 16 5 4 18 18 N 1.46921 * 109.70849 * 239.63581 * 2 1 3 19 19 C 1.34779 * 120.62570 * 6.51487 * 18 2 1 20 20 O 1.21487 * 120.00117 * 7.29864 * 19 18 2 21 21 C 1.48381 * 119.99610 * 187.29414 * 19 18 2 22 22 C 1.40218 * 119.21635 * 201.78333 * 21 19 18 23 23 C 1.36646 * 119.90172 * 179.74289 * 22 21 19 24 24 C 1.40551 * 118.11382 * 0.49639 * 23 22 21 25 25 C 1.40402 * 122.07070 * 179.74587 * 24 23 22 26 26 N 1.31251 * 119.87224 * 179.97438 * 25 24 23 27 27 C 1.32593 * 122.68824 * 0.02562 * 26 25 24 28 28 C 1.36105 * 121.98992 * 0.02562 * 27 26 25 29 29 C 1.40939 * 118.77166 * 359.97438 * 28 27 26 30 30 N 1.31974 * 119.22035 * 22.05746 * 21 19 18 31 31 H 1.09001 * 109.47211 * 292.36088 * 1 2 3 32 32 H 1.09006 * 109.46615 * 52.35606 * 1 2 3 33 33 H 1.08992 * 109.47246 * 172.35192 * 1 2 3 34 34 H 1.08996 * 109.49603 * 54.61699 * 4 2 1 35 35 H 1.08993 * 109.52779 * 294.53545 * 4 2 1 36 36 H 0.97007 * 119.99457 * 334.97449 * 7 5 4 37 37 H 0.96998 * 120.00345 * 180.02562 * 11 10 8 38 38 H 1.08996 * 109.49790 * 181.30934 * 16 5 4 39 39 H 1.09000 * 109.49970 * 301.41251 * 16 5 4 40 40 H 1.08997 * 109.59188 * 185.56784 * 17 16 5 41 41 H 1.09002 * 109.59159 * 65.13807 * 17 16 5 42 42 H 1.07995 * 120.05074 * 359.97438 * 22 21 19 43 43 H 1.08005 * 120.93905 * 180.24668 * 23 22 21 44 44 H 1.07998 * 120.06602 * 0.02932 * 25 24 23 45 45 H 1.08004 * 119.00428 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.61312 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7276 1.2465 5 6 3.5678 -0.8432 1.1731 6 1 3.9379 -1.3390 2.0704 7 7 4.1548 0.4957 1.0780 8 6 5.4379 0.7126 1.5040 9 1 6.0158 -0.1024 1.9142 10 6 5.9939 1.9814 1.4143 11 7 7.2274 2.1897 1.8233 12 14 4.9914 3.3930 0.7131 13 1 4.2500 4.0661 1.8095 14 1 5.9001 4.3681 0.0584 15 1 4.0272 2.8667 -0.2863 16 6 3.9601 -1.6607 -0.0597 17 6 3.4686 -0.9438 -1.3208 18 7 2.0255 -0.6992 -1.1934 19 6 1.1722 -1.1088 -2.1529 20 8 0.0018 -0.7869 -2.1029 21 6 1.6624 -1.9529 -3.2705 22 6 0.9334 -1.9945 -4.4676 23 6 1.3749 -2.7630 -5.5076 24 6 2.5570 -3.5022 -5.3298 25 6 3.0823 -4.3227 -6.3408 26 7 4.1899 -4.9941 -6.1282 27 6 4.8533 -4.9365 -4.9816 28 6 4.4270 -4.1720 -3.9395 29 6 3.2442 -3.4202 -4.0890 30 7 2.7713 -2.6509 -3.1124 31 1 -0.3634 0.3910 0.9504 32 1 -0.3633 0.6277 -0.8138 33 1 -0.3633 -1.0184 -0.1368 34 1 1.6049 -1.7244 1.2924 35 1 1.7637 -0.1657 2.1375 36 1 3.6344 1.2286 0.7132 37 1 7.6159 3.0763 1.7610 38 1 5.0446 -1.7624 -0.0988 39 1 3.5034 -2.6487 -0.0015 40 1 3.6577 -1.5686 -2.1937 41 1 3.9920 0.0062 -1.4287 42 1 0.0264 -1.4171 -4.5687 43 1 0.8287 -2.8042 -6.4385 44 1 2.5765 -4.4006 -7.2918 45 1 5.7590 -5.5145 -4.8711 46 1 4.9846 -4.1419 -3.0151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044748827.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:28 Heat of formation + Delta-G solvation = 82.340945 kcal Electronic energy + Delta-G solvation = -30088.961571 eV Core-core repulsion = 26173.338460 eV Total energy + Delta-G solvation = -3915.623111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.73260 -40.36780 -38.35702 -37.50865 -34.57175 -34.00615 -32.91790 -31.95505 -31.48539 -30.80295 -29.65237 -27.32459 -25.94840 -24.65624 -24.16679 -23.16343 -22.94613 -22.21158 -20.59993 -18.95174 -18.74307 -17.76755 -17.63412 -17.36567 -16.30287 -16.10033 -15.37602 -15.15337 -15.11864 -14.76115 -14.48926 -14.43682 -14.13621 -13.81956 -13.68376 -13.47723 -13.39754 -13.20836 -12.85136 -12.58073 -12.45146 -12.29022 -12.09935 -11.67604 -11.36214 -11.11063 -11.00682 -10.91394 -10.77066 -10.62684 -10.25580 -10.07587 -10.05929 -9.69899 -9.62389 -9.59101 -9.09955 -8.95445 -8.74566 -8.30708 -7.28489 -5.79310 -3.14349 -0.31128 0.19985 1.43843 2.18624 2.90863 3.02296 3.33767 3.36894 3.42867 3.62444 3.76990 3.95579 4.10205 4.27344 4.28421 4.39991 4.56202 4.73968 4.91180 5.09559 5.13409 5.22583 5.28311 5.30504 5.36004 5.37034 5.50841 5.54991 5.63080 5.66873 5.72559 5.80403 5.88023 5.91941 6.04797 6.13170 6.17036 6.30415 6.36778 6.42888 6.52124 6.65454 6.69475 6.75949 6.97458 7.21928 7.51307 7.54787 7.97402 8.12332 8.39896 9.18222 9.91035 10.11011 11.39187 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012300 B = 0.003695 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.926684 B = 7575.260002 C = 8781.104128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.141 3.859 3 H 0.074 0.926 4 C -0.135 4.135 5 C 0.177 3.823 6 H 0.060 0.940 7 N -0.747 5.747 8 C -0.240 4.240 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.934 5.934 12 Si 0.879 3.121 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.279 1.279 16 C -0.139 4.139 17 C 0.080 3.920 18 N -0.573 5.573 19 C 0.562 3.438 20 O -0.530 6.530 21 C 0.143 3.857 22 C -0.131 4.131 23 C -0.038 4.038 24 C -0.155 4.155 25 C 0.157 3.843 26 N -0.483 5.483 27 C 0.087 3.913 28 C -0.131 4.131 29 C 0.146 3.854 30 N -0.429 5.429 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.359 0.641 37 H 0.259 0.741 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.168 0.832 45 H 0.162 0.838 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 -13.198 -15.344 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.038 3.962 3 H 0.092 0.908 4 C -0.174 4.174 5 C 0.067 3.933 6 H 0.077 0.923 7 N -0.390 5.390 8 C -0.370 4.370 9 H 0.109 0.891 10 C -0.190 4.190 11 N -0.582 5.582 12 Si 0.710 3.290 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.206 1.206 16 C -0.179 4.179 17 C -0.041 4.041 18 N -0.304 5.304 19 C 0.347 3.653 20 O -0.408 6.408 21 C -0.011 4.011 22 C -0.152 4.152 23 C -0.066 4.066 24 C -0.160 4.160 25 C -0.017 4.017 26 N -0.191 5.191 27 C -0.056 4.056 28 C -0.151 4.151 29 C 0.019 3.981 30 N -0.141 5.141 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.143 0.857 41 H 0.087 0.913 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.185 0.815 45 H 0.180 0.820 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.880 -13.621 -14.955 23.458 hybrid contribution -1.106 1.700 -0.482 2.085 sum -12.986 -11.921 -15.436 23.431 Atomic orbital electron populations 1.22196 0.92945 1.03429 1.00923 1.21342 0.95111 0.95783 0.83914 0.90797 1.22279 0.97617 1.00642 0.96875 1.20217 0.90023 0.87139 0.95915 0.92250 1.42866 1.14405 1.05304 1.76460 1.19073 0.88370 0.95908 1.33669 0.89132 1.24636 0.96064 0.97049 1.01223 1.69687 1.13567 1.21883 1.53024 0.86646 0.79689 0.83616 0.79090 1.21027 1.21757 1.20554 1.22346 1.01575 0.97988 0.96032 1.22737 0.77478 1.02095 1.01825 1.48105 1.08575 1.54754 1.18937 1.17963 0.85611 0.80168 0.81567 1.90820 1.16924 1.57304 1.75736 1.21825 0.90409 0.94404 0.94474 1.21793 1.01343 0.99779 0.92271 1.21438 0.93395 0.92538 0.99241 1.19938 0.98047 1.01177 0.96798 1.23236 0.91177 0.89688 0.97553 1.67493 1.07500 1.20671 1.23452 1.22304 0.99011 0.96472 0.87823 1.21878 0.95134 0.96436 1.01688 1.19080 0.95213 0.94481 0.89313 1.68074 1.10715 1.05567 1.29784 0.93455 0.90777 0.91769 0.91538 0.90478 0.80708 0.93089 0.90607 0.92880 0.85711 0.91321 0.82882 0.83001 0.81501 0.82034 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.62 37.16 0.28 -1.72 16 2 C 0.14 2.26 3.19 -67.60 -0.22 2.04 16 3 H 0.07 1.30 6.64 -51.93 -0.34 0.96 16 4 C -0.14 -2.12 5.07 -26.61 -0.13 -2.26 16 5 C 0.18 3.25 3.10 -67.89 -0.21 3.04 16 6 H 0.06 1.13 8.08 -51.93 -0.42 0.72 16 7 N -0.75 -16.82 4.11 -53.39 -0.22 -17.04 16 8 C -0.24 -6.51 10.41 -15.06 -0.16 -6.67 16 9 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 10 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 11 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16 12 Si 0.88 21.90 27.74 -169.99 -4.71 17.19 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 15 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 16 C -0.14 -2.32 5.78 -26.62 -0.15 -2.48 16 17 C 0.08 1.32 5.85 -3.72 -0.02 1.30 16 18 N -0.57 -9.13 2.97 -166.14 -0.49 -9.63 16 19 C 0.56 8.52 7.37 -12.08 -0.09 8.43 16 20 O -0.53 -8.54 12.12 5.38 0.07 -8.47 16 21 C 0.14 1.87 6.42 -82.89 -0.53 1.34 16 22 C -0.13 -1.32 9.53 -39.41 -0.38 -1.69 16 23 C -0.04 -0.29 9.92 -39.29 -0.39 -0.68 16 24 C -0.16 -1.46 5.75 -106.74 -0.61 -2.08 16 25 C 0.16 1.27 11.05 -16.99 -0.19 1.08 16 26 N -0.48 -4.69 10.30 -13.18 -0.14 -4.82 16 27 C 0.09 0.79 11.06 -17.99 -0.20 0.59 16 28 C -0.13 -1.31 10.08 -39.33 -0.40 -1.71 16 29 C 0.15 1.68 6.63 -84.86 -0.56 1.12 16 30 N -0.43 -5.61 6.49 -7.49 -0.05 -5.66 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.14 6.68 -51.93 -0.35 0.79 16 33 H 0.06 0.96 6.84 -51.93 -0.36 0.61 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.36 8.12 3.92 -40.82 -0.16 7.96 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.13 1.92 3.93 -76.91 -0.30 1.62 16 41 H 0.07 1.31 7.74 -51.93 -0.40 0.91 16 42 H 0.15 1.35 7.76 -52.49 -0.41 0.94 16 43 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 44 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -32.80 363.63 -9.48 -42.28 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.13 Total: 9.02 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -4.05 Total: -0.27 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.12 Total: -65.23 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.80 -9.48 -42.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044748827.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.618 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds