Wall clock time and date at job start Sat Apr 11 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 109.58659 * 2 1 4 4 C 1.53189 * 109.70349 * 239.64122 * 2 1 3 5 5 C 1.53038 * 109.31234 * 294.78233 * 4 2 1 6 6 H 1.08999 * 109.46581 * 58.65421 * 5 4 2 7 7 N 1.46510 * 109.46050 * 178.61417 * 5 4 2 8 8 C 1.36935 * 120.00001 * 204.99982 * 7 5 4 9 9 H 1.08000 * 120.00130 * 359.97438 * 8 7 5 10 10 C 1.38814 * 119.99731 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99821 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99947 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47127 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47222 * 119.99850 * 12 10 8 15 15 H 1.48496 * 109.47039 * 239.99831 * 12 10 8 16 16 C 1.53040 * 109.53921 * 298.62953 * 5 4 2 17 17 C 1.52764 * 109.38058 * 61.24528 * 16 5 4 18 18 N 1.46928 * 109.58292 * 120.28334 * 2 1 3 19 19 C 1.34778 * 120.62993 * 246.29593 * 18 2 1 20 20 O 1.21491 * 119.99705 * 0.16600 * 19 18 2 21 21 C 1.48378 * 120.00109 * 180.17331 * 19 18 2 22 22 C 1.40210 * 119.21989 * 158.05610 * 21 19 18 23 23 C 1.36640 * 119.90081 * 180.02562 * 22 21 19 24 24 C 1.40558 * 118.11316 * 0.02562 * 23 22 21 25 25 C 1.40403 * 122.05682 * 179.97438 * 24 23 22 26 26 N 1.31245 * 119.87195 * 180.02562 * 25 24 23 27 27 C 1.32598 * 122.68190 * 0.02562 * 26 25 24 28 28 C 1.36103 * 121.99458 * 359.97438 * 27 26 25 29 29 C 1.40940 * 118.77300 * 0.02562 * 28 27 26 30 30 N 1.31986 * 119.21633 * 338.07286 * 21 19 18 31 31 H 1.09000 * 109.46610 * 299.71974 * 1 2 3 32 32 H 1.09002 * 109.47072 * 59.71283 * 1 2 3 33 33 H 1.08994 * 109.47011 * 179.71680 * 1 2 3 34 34 H 1.09004 * 109.49459 * 54.72871 * 4 2 1 35 35 H 1.08996 * 109.50131 * 174.79473 * 4 2 1 36 36 H 0.96997 * 119.99741 * 24.98970 * 7 5 4 37 37 H 0.97009 * 119.99577 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.50053 * 181.31560 * 16 5 4 39 39 H 1.08994 * 109.50000 * 301.38557 * 16 5 4 40 40 H 1.09001 * 109.50912 * 185.70793 * 17 16 5 41 41 H 1.08998 * 109.43124 * 65.42015 * 17 16 5 42 42 H 1.07992 * 120.04677 * 359.97438 * 22 21 19 43 43 H 1.08010 * 120.94165 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.06607 * 0.02562 * 25 24 23 45 45 H 1.08000 * 119.00087 * 180.27807 * 27 26 25 46 46 H 1.08009 * 120.61281 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0466 -0.7289 -1.2444 5 6 1.6473 -2.2043 -1.1690 6 1 0.5624 -2.2839 -1.0994 7 7 2.1110 -2.8977 -2.3734 8 6 1.4764 -4.0353 -2.7957 9 1 0.6343 -4.4216 -2.2407 10 6 1.9154 -4.6919 -3.9372 11 7 2.9414 -4.2208 -4.6138 12 14 1.0502 -6.2441 -4.5130 13 1 -0.0652 -6.5621 -3.5856 14 1 0.5113 -6.0322 -5.8804 15 1 2.0164 -7.3716 -4.5310 16 6 2.2857 -2.8449 0.0656 17 6 1.7768 -2.1411 1.3223 18 7 2.0225 -0.6981 1.1954 19 6 2.6920 -0.0285 2.1546 20 8 2.8906 1.1642 2.0369 21 6 3.1864 -0.7482 3.3543 22 6 4.2415 -0.1980 4.0960 23 6 4.7081 -0.8492 5.2029 24 6 4.1020 -2.0661 5.5601 25 6 4.5159 -2.8041 6.6805 26 7 3.9198 -3.9359 6.9744 27 6 2.9244 -4.4298 6.2509 28 6 2.4497 -3.7913 5.1466 29 6 3.0377 -2.5688 4.7644 30 7 2.6229 -1.8912 3.6977 31 1 -0.3632 0.5095 0.8925 32 1 -0.3633 0.5183 -0.8874 33 1 -0.3633 -1.0276 -0.0051 34 1 1.6106 -0.2792 -2.1366 35 1 3.1325 -0.6473 -1.2895 36 1 2.8674 -2.5509 -2.8718 37 1 3.2484 -4.6799 -5.4113 38 1 2.0200 -3.9012 0.1060 39 1 3.3695 -2.7443 0.0084 40 1 2.3050 -2.5264 2.1945 41 1 0.7073 -2.3214 1.4310 42 1 4.6851 0.7386 3.7924 43 1 5.5197 -0.4405 5.7868 44 1 5.3232 -2.4412 7.2994 45 1 2.4736 -5.3645 6.5497 46 1 1.6379 -4.2142 4.5732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044748832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:33 Heat of formation + Delta-G solvation = 62.873143 kcal Electronic energy + Delta-G solvation = -29428.585311 eV Core-core repulsion = 25512.118013 eV Total energy + Delta-G solvation = -3916.467298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75883 -40.24465 -38.37601 -37.50270 -34.69612 -34.12191 -32.75698 -31.84065 -31.52020 -30.83111 -29.34204 -27.31267 -26.18524 -24.66045 -24.13799 -23.26573 -22.70931 -22.14589 -20.86645 -19.00640 -18.74252 -17.85055 -17.57124 -17.01575 -16.44318 -15.97265 -15.63052 -15.18991 -14.93105 -14.81862 -14.64730 -14.33386 -14.06265 -13.81307 -13.51483 -13.48792 -13.40751 -13.11252 -12.98731 -12.76073 -12.51371 -12.42071 -11.80762 -11.61900 -11.27806 -11.09886 -10.93150 -10.85634 -10.79343 -10.54629 -10.34344 -10.17112 -10.10431 -9.77714 -9.71194 -9.61751 -9.33825 -8.95268 -8.77123 -8.51814 -6.96791 -5.78346 -3.07105 -0.34974 0.16589 1.40084 2.15952 2.82298 2.98801 3.41347 3.46957 3.49281 3.57421 3.70900 3.92217 4.06764 4.22742 4.25189 4.37027 4.56799 4.69473 4.87315 5.04644 5.17646 5.22228 5.23695 5.30580 5.34434 5.42762 5.47978 5.52972 5.59824 5.63614 5.75064 5.80742 5.83861 5.93413 6.00339 6.11290 6.17026 6.28566 6.35747 6.44763 6.49259 6.55197 6.65484 6.92085 7.07321 7.14751 7.45351 7.47926 7.68280 8.04236 8.40011 9.51251 10.09245 10.43937 11.44347 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.003098 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.681688 B = 9036.854105 C =10618.395738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.096 0.904 4 C -0.133 4.133 5 C 0.178 3.822 6 H 0.051 0.949 7 N -0.725 5.725 8 C -0.237 4.237 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.152 4.152 17 C 0.076 3.924 18 N -0.572 5.572 19 C 0.563 3.437 20 O -0.538 6.538 21 C 0.147 3.853 22 C -0.131 4.131 23 C -0.036 4.036 24 C -0.155 4.155 25 C 0.159 3.841 26 N -0.484 5.484 27 C 0.088 3.912 28 C -0.133 4.133 29 C 0.146 3.854 30 N -0.433 5.433 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.169 0.831 45 H 0.162 0.838 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 6.837 23.137 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.115 0.885 4 C -0.172 4.172 5 C 0.068 3.932 6 H 0.069 0.931 7 N -0.365 5.365 8 C -0.368 4.368 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.193 4.193 17 C -0.046 4.046 18 N -0.302 5.302 19 C 0.348 3.652 20 O -0.415 6.415 21 C -0.007 4.007 22 C -0.151 4.151 23 C -0.064 4.064 24 C -0.159 4.159 25 C -0.015 4.015 26 N -0.191 5.191 27 C -0.055 4.055 28 C -0.153 4.153 29 C 0.019 3.981 30 N -0.146 5.146 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.172 0.828 43 H 0.171 0.829 44 H 0.186 0.814 45 H 0.179 0.821 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.780 6.298 23.240 24.091 hybrid contribution 0.217 -0.180 -0.957 0.998 sum 0.997 6.119 22.283 23.129 Atomic orbital electron populations 1.22129 0.94672 1.02966 1.01951 1.21312 0.94315 0.97103 0.83727 0.88548 1.22211 1.01325 0.97363 0.96272 1.20230 0.96811 0.89051 0.87140 0.93099 1.42449 1.37996 1.29179 1.26861 1.19273 1.10204 1.00941 1.06422 0.91148 1.24743 0.98542 0.99480 0.98226 1.69676 1.27649 1.41217 1.19537 0.86146 0.78647 0.83202 0.78379 1.20549 1.21898 1.21918 1.22616 1.00874 1.00595 0.95199 1.22837 1.02054 0.78158 1.01566 1.48161 1.52357 1.10382 1.19303 1.17907 0.78756 0.86276 0.82222 1.90771 1.58421 1.14000 1.78332 1.21662 0.93225 0.90590 0.95233 1.21791 0.96455 1.01799 0.95071 1.21454 0.97634 0.92136 0.95204 1.19938 0.98984 0.97956 0.99046 1.23253 0.96627 0.89288 0.92308 1.67500 1.08380 1.12632 1.30631 1.22302 0.92469 0.99556 0.91176 1.21844 1.01408 0.93629 0.98456 1.19067 0.92973 0.95157 0.90874 1.68103 1.27813 1.05768 1.12878 0.92836 0.91172 0.91510 0.90398 0.91856 0.78346 0.93582 0.90766 0.92721 0.85414 0.91568 0.82782 0.82887 0.81428 0.82058 0.83108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.04 37.16 0.34 -1.73 16 2 C 0.14 2.03 3.20 -67.60 -0.22 1.81 16 3 H 0.10 1.44 7.00 -51.93 -0.36 1.07 16 4 C -0.13 -2.22 5.03 -26.61 -0.13 -2.35 16 5 C 0.18 3.42 2.53 -67.88 -0.17 3.25 16 6 H 0.05 0.99 6.44 -51.93 -0.33 0.66 16 7 N -0.72 -17.83 5.12 -53.38 -0.27 -18.10 16 8 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 9 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 11 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 12 Si 0.90 22.17 29.55 -169.99 -5.02 17.14 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 C -0.15 -2.66 5.64 -26.83 -0.15 -2.81 16 17 C 0.08 1.11 5.54 -3.93 -0.02 1.08 16 18 N -0.57 -8.42 2.68 -166.38 -0.45 -8.87 16 19 C 0.56 8.36 7.61 -12.08 -0.09 8.27 16 20 O -0.54 -8.98 15.90 5.37 0.09 -8.89 16 21 C 0.15 1.86 6.46 -82.89 -0.54 1.32 16 22 C -0.13 -1.29 9.53 -39.42 -0.38 -1.66 16 23 C -0.04 -0.27 9.92 -39.28 -0.39 -0.66 16 24 C -0.16 -1.40 5.75 -106.74 -0.61 -2.01 16 25 C 0.16 1.22 11.05 -16.99 -0.19 1.04 16 26 N -0.48 -4.49 10.30 -13.18 -0.14 -4.63 16 27 C 0.09 0.75 11.05 -17.99 -0.20 0.55 16 28 C -0.13 -1.23 10.08 -39.33 -0.40 -1.63 16 29 C 0.15 1.60 6.63 -84.86 -0.56 1.04 16 30 N -0.43 -5.35 6.33 -7.49 -0.05 -5.39 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.90 5.76 -51.93 -0.30 0.60 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.38 10.14 7.80 -40.82 -0.32 9.83 16 37 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.13 1.79 4.00 -79.54 -0.32 1.47 16 41 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16 42 H 0.15 1.35 7.76 -52.49 -0.41 0.95 16 43 H 0.15 0.54 8.06 -52.48 -0.42 0.11 16 44 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -33.12 372.26 -9.67 -42.79 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.21 Total: 9.23 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -3.96 Total: -1.61 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.18 Total: -64.27 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.12 -9.67 -42.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044748832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.659 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds