Wall clock time and date at job start Sat Apr 11 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.70291 * 2 1 4 4 C 1.53197 * 109.58350 * 239.62974 * 2 1 3 5 5 C 1.53035 * 109.31113 * 185.56442 * 4 2 1 6 6 H 1.09005 * 109.46154 * 301.37598 * 5 4 2 7 7 N 1.46500 * 109.46126 * 181.40235 * 5 4 2 8 8 C 1.36937 * 120.00383 * 154.97211 * 7 5 4 9 9 H 1.08001 * 119.99765 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00406 * 180.02562 * 8 7 5 11 11 N 1.31627 * 119.99883 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00487 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.46802 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.46914 * 240.00244 * 12 10 8 15 15 H 1.48494 * 109.47092 * 119.99903 * 12 10 8 16 16 C 1.53046 * 109.52911 * 61.38765 * 5 4 2 17 17 C 1.53187 * 109.31155 * 298.62975 * 16 5 4 18 18 N 1.46924 * 108.77751 * 54.63296 * 17 16 5 19 19 C 1.34778 * 120.63257 * 126.41318 * 18 17 16 20 20 O 1.21491 * 120.00166 * 175.13166 * 19 18 17 21 21 C 1.48377 * 119.99716 * 355.13504 * 19 18 17 22 22 C 1.40213 * 119.21779 * 206.66884 * 21 19 18 23 23 C 1.36640 * 119.90740 * 179.97438 * 22 21 19 24 24 C 1.40559 * 118.10994 * 0.02562 * 23 22 21 25 25 C 1.40397 * 122.06688 * 180.02562 * 24 23 22 26 26 N 1.31247 * 119.87408 * 179.97438 * 25 24 23 27 27 C 1.32588 * 122.68592 * 359.95810 * 26 25 24 28 28 C 1.36101 * 121.99389 * 0.04182 * 27 26 25 29 29 C 1.40943 * 118.76763 * 359.97438 * 28 27 26 30 30 N 1.31984 * 119.22249 * 26.40622 * 21 19 18 31 31 H 1.09002 * 109.47266 * 309.75002 * 1 2 3 32 32 H 1.08995 * 109.47413 * 69.74991 * 1 2 3 33 33 H 1.09004 * 109.47424 * 189.75345 * 1 2 3 34 34 H 1.08997 * 109.48301 * 65.62410 * 4 2 1 35 35 H 1.08994 * 109.50845 * 305.52576 * 4 2 1 36 36 H 0.96998 * 119.99703 * 334.97631 * 7 5 4 37 37 H 0.97001 * 119.99937 * 0.02562 * 11 10 8 38 38 H 1.09000 * 109.49015 * 58.57641 * 16 5 4 39 39 H 1.09000 * 109.49811 * 178.67404 * 16 5 4 40 40 H 1.08997 * 109.58808 * 174.41942 * 17 16 5 41 41 H 1.09003 * 109.58706 * 294.84276 * 17 16 5 42 42 H 1.08003 * 120.04729 * 359.96530 * 22 21 19 43 43 H 1.07997 * 120.94584 * 179.97438 * 23 22 21 44 44 H 1.08005 * 120.06216 * 359.97438 * 25 24 23 45 45 H 1.08002 * 119.00666 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.61910 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0435 -0.7297 -1.2453 5 6 3.5674 -0.8480 -1.1702 6 1 4.0059 0.1474 -1.0992 7 7 4.0651 -1.5158 -2.3754 8 6 5.3493 -1.2981 -2.7980 9 1 5.9954 -0.6345 -2.2425 10 6 5.8208 -1.9304 -3.9403 11 7 5.0335 -2.7396 -4.6170 12 14 7.5728 -1.6341 -4.5164 13 1 8.2461 -0.6904 -3.5882 14 1 7.5530 -1.0538 -5.8831 15 1 8.3119 -2.9219 -4.5359 16 6 3.9569 -1.6658 0.0635 17 6 3.4650 -0.9471 1.3237 18 7 2.0225 -0.6997 1.1945 19 6 1.1674 -1.1063 2.1536 20 8 -0.0106 -0.8189 2.0788 21 6 1.6648 -1.9050 3.3009 22 6 0.7865 -2.7770 3.9598 23 6 1.2298 -3.5196 5.0176 24 6 2.5718 -3.3773 5.4107 25 6 3.1143 -4.0996 6.4853 26 7 4.3738 -3.9335 6.8152 27 6 5.1788 -3.1001 6.1707 28 6 4.7501 -2.3544 5.1159 29 6 3.4089 -2.4759 4.6999 30 7 2.9249 -1.7818 3.6737 31 1 -0.3634 0.6571 0.7901 32 1 -0.3634 0.3557 -0.9641 33 1 -0.3634 -1.0128 0.1741 34 1 1.7658 -0.1673 -2.1366 35 1 1.6030 -1.7257 -1.2911 36 1 3.4849 -2.1120 -2.8742 37 1 4.1238 -2.8938 -4.3177 38 1 3.4982 -2.6529 0.0051 39 1 5.0412 -1.7697 0.1036 40 1 3.6518 -1.5719 2.1971 41 1 3.9903 0.0019 1.4317 42 1 -0.2390 -2.8615 3.6317 43 1 0.5676 -4.1961 5.5375 44 1 2.4965 -4.7907 7.0395 45 1 6.2058 -3.0101 6.4925 46 1 5.4250 -1.6821 4.6071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044748833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:05 Heat of formation + Delta-G solvation = 54.915364 kcal Electronic energy + Delta-G solvation = -29490.928963 eV Core-core repulsion = 25574.116590 eV Total energy + Delta-G solvation = -3916.812374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.59707 -41.46587 -39.28125 -38.68956 -36.55615 -35.00811 -34.08923 -33.83585 -32.45954 -31.53658 -30.83090 -28.50422 -26.89397 -25.86691 -25.35954 -24.67543 -23.67869 -23.38810 -21.93313 -20.88637 -19.65802 -19.39079 -18.61518 -18.35743 -17.24775 -17.22453 -16.91699 -16.58202 -16.09698 -15.90197 -15.66074 -15.56553 -15.41970 -15.31505 -14.93749 -14.76618 -14.47114 -14.18280 -14.06102 -13.86751 -13.61475 -13.35745 -13.19647 -13.14821 -12.78024 -12.66211 -12.42767 -12.12738 -12.11233 -11.87276 -11.75809 -11.71882 -11.24009 -11.08953 -10.79242 -10.71037 -10.49649 -10.09253 -9.73117 -9.57645 -9.12422 -8.40093 -5.34243 -1.08340 -0.55679 0.69674 1.26583 1.57184 1.68527 1.69607 1.80111 2.06613 2.68215 2.71581 2.93084 3.32895 3.34742 3.39211 3.43750 3.54926 3.58430 3.69658 3.76997 3.92654 3.97376 4.03966 4.16403 4.22332 4.25053 4.44439 4.49425 4.51618 4.58118 4.63213 4.72651 4.75427 4.81701 4.87472 4.88454 4.90924 5.02997 5.08641 5.15067 5.29153 5.32481 5.36188 5.51485 5.58968 5.63934 6.20582 6.36332 6.48066 6.83811 6.90890 7.07441 7.97380 8.09961 9.11828 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.003190 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.362691 B = 8774.178074 C =10683.227074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.147 3.853 3 H 0.085 0.915 4 C -0.122 4.122 5 C 0.178 3.822 6 H 0.044 0.956 7 N -0.749 5.749 8 C -0.325 4.325 9 H 0.067 0.933 10 C -0.106 4.106 11 N -0.978 5.978 12 Si 1.131 2.869 13 H -0.270 1.270 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.136 4.136 17 C 0.086 3.914 18 N -0.581 5.581 19 C 0.561 3.439 20 O -0.541 6.541 21 C 0.125 3.875 22 C -0.147 4.147 23 C -0.008 4.008 24 C -0.166 4.166 25 C 0.171 3.829 26 N -0.505 5.505 27 C 0.093 3.907 28 C -0.153 4.153 29 C 0.126 3.874 30 N -0.458 5.458 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.357 0.643 37 H 0.243 0.757 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.145 0.855 41 H 0.074 0.926 42 H 0.163 0.837 43 H 0.201 0.799 44 H 0.209 0.791 45 H 0.184 0.816 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 -0.156 25.901 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.044 3.956 3 H 0.103 0.897 4 C -0.161 4.161 5 C 0.070 3.930 6 H 0.062 0.938 7 N -0.390 5.390 8 C -0.457 4.457 9 H 0.085 0.915 10 C -0.297 4.297 11 N -0.626 5.626 12 Si 0.956 3.044 13 H -0.195 1.195 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.177 4.177 17 C -0.037 4.037 18 N -0.312 5.312 19 C 0.348 3.652 20 O -0.419 6.419 21 C -0.028 4.028 22 C -0.167 4.167 23 C -0.036 4.036 24 C -0.170 4.170 25 C -0.002 4.002 26 N -0.213 5.213 27 C -0.050 4.050 28 C -0.173 4.173 29 C -0.001 4.001 30 N -0.171 5.171 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.189 0.811 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.161 0.839 41 H 0.092 0.908 42 H 0.181 0.819 43 H 0.218 0.782 44 H 0.225 0.775 45 H 0.201 0.799 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.928 -0.013 25.081 25.772 hybrid contribution -1.911 0.168 -0.031 1.919 sum -7.839 0.155 25.050 26.249 Atomic orbital electron populations 1.22058 0.91800 1.03063 1.01274 1.21383 0.96122 0.95432 0.82634 0.89672 1.22150 0.95410 1.00672 0.97875 1.20362 0.92481 0.94459 0.85739 0.93784 1.42666 1.12278 1.55078 1.29012 1.20413 0.90674 1.24999 1.09586 0.91473 1.27178 1.09505 0.97619 0.95406 1.70935 1.08124 1.40740 1.42811 0.82568 0.70320 0.75891 0.75589 1.19496 1.21863 1.21912 1.22427 1.00522 0.98886 0.95846 1.22890 0.78217 1.02323 1.00244 1.48161 1.08361 1.55234 1.19488 1.18280 0.85356 0.79403 0.82153 1.90824 1.16697 1.57413 1.77002 1.21659 0.90151 0.95582 0.95400 1.21921 1.01948 0.96069 0.96786 1.21954 0.93369 0.95246 0.92985 1.20207 0.96694 1.00136 1.00010 1.23909 0.91238 0.94222 0.90873 1.67598 1.05791 1.18074 1.29808 1.22676 1.00799 0.90390 0.91102 1.21976 0.93786 1.02341 0.99181 1.19392 0.95696 0.93433 0.91625 1.67761 1.12804 1.23710 1.12835 0.91290 0.92125 0.92526 0.90646 0.92840 0.81114 0.94622 0.94348 0.92334 0.83907 0.90779 0.81916 0.78161 0.77457 0.79860 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.39 7.63 71.98 0.55 -2.84 16 2 C 0.15 4.28 3.49 44.97 0.16 4.43 16 3 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.12 -4.15 4.82 30.67 0.15 -4.01 16 5 C 0.18 7.15 2.73 45.02 0.12 7.27 16 6 H 0.04 1.82 8.08 -2.38 -0.02 1.80 16 7 N -0.75 -38.19 5.12 -322.81 -1.65 -39.84 16 8 C -0.33 -18.32 9.93 84.03 0.83 -17.48 16 9 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 10 C -0.11 -6.20 5.50 84.86 0.47 -5.74 16 11 N -0.98 -61.87 13.70 21.65 0.30 -61.57 16 12 Si 1.13 52.40 29.92 68.60 2.05 54.45 16 13 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 15 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 16 C -0.14 -4.96 5.66 30.67 0.17 -4.79 16 17 C 0.09 2.53 6.07 86.36 0.52 3.05 16 18 N -0.58 -17.03 2.97 -797.81 -2.37 -19.40 16 19 C 0.56 16.03 7.38 86.94 0.64 16.67 16 20 O -0.54 -16.57 12.14 -3.69 -0.04 -16.62 16 21 C 0.12 3.04 6.44 42.30 0.27 3.32 16 22 C -0.15 -2.57 9.53 22.38 0.21 -2.36 16 23 C -0.01 -0.09 9.92 22.46 0.22 0.13 16 24 C -0.17 -2.58 5.75 -21.24 -0.12 -2.70 16 25 C 0.17 2.06 11.05 85.31 0.94 3.00 16 26 N -0.50 -8.13 10.30 -195.62 -2.02 -10.15 16 27 C 0.09 1.43 11.05 84.08 0.93 2.36 16 28 C -0.15 -2.73 10.08 22.44 0.23 -2.51 16 29 C 0.13 2.63 6.63 40.58 0.27 2.90 16 30 N -0.46 -11.15 6.40 -177.61 -1.14 -12.29 16 31 H 0.07 1.91 6.88 -2.39 -0.02 1.89 16 32 H 0.06 1.47 8.12 -2.39 -0.02 1.45 16 33 H 0.06 1.68 6.60 -2.39 -0.02 1.67 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.36 19.23 6.63 -92.71 -0.61 18.61 16 37 H 0.24 15.40 6.78 -92.71 -0.63 14.78 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.14 4.05 3.91 -58.50 -0.23 3.83 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.16 2.46 7.83 -2.91 -0.02 2.44 16 43 H 0.20 0.29 8.06 -2.91 -0.02 0.27 16 44 H 0.21 0.67 8.06 -2.91 -0.02 0.64 16 45 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -74.84 369.27 2.02 -72.82 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.32 Total: 31.89 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 6.57 Total: 0.72 kcal Atomic # 7 Polarization: -136.38 SS G_CDS: -6.88 Total: -143.26 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.04 Total: -16.62 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.05 Total: 54.45 kcal Total: -74.84 2.02 -72.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044748833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.736 kcal (2) G-P(sol) polarization free energy of solvation -74.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds