Wall clock time and date at job start Sat Apr 11 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.69948 * 2 1 4 4 C 1.52764 * 109.51382 * 239.88182 * 2 1 3 5 5 C 1.53035 * 109.38663 * 185.70415 * 4 2 1 6 6 H 1.08999 * 109.46313 * 301.22157 * 5 4 2 7 7 N 1.46495 * 109.46289 * 181.25710 * 5 4 2 8 8 C 1.36939 * 119.99931 * 154.92726 * 7 5 4 9 9 H 1.07999 * 119.99993 * 0.02562 * 8 7 5 10 10 C 1.38808 * 119.99724 * 180.02562 * 8 7 5 11 11 N 1.31627 * 120.00215 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00047 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47318 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47645 * 120.00159 * 12 10 8 15 15 H 1.48505 * 109.47332 * 240.00535 * 12 10 8 16 16 C 1.53043 * 109.53808 * 61.23878 * 5 4 2 17 17 C 1.53196 * 109.31298 * 298.63788 * 16 5 4 18 18 N 1.46920 * 108.77660 * 54.63282 * 17 16 5 19 19 C 1.34776 * 120.63014 * 126.37331 * 18 17 16 20 20 O 1.21551 * 120.00109 * 185.83873 * 19 18 17 21 21 C 1.47867 * 120.00334 * 5.83218 * 19 18 17 22 22 C 1.38945 * 121.41956 * 53.78215 * 21 19 18 23 23 N 1.32583 * 120.33744 * 180.02562 * 22 21 19 24 24 N 1.28383 * 123.43487 * 359.97438 * 23 22 21 25 25 C 1.33474 * 121.85303 * 359.97438 * 24 23 22 26 26 C 1.40584 * 121.74807 * 179.97438 * 25 24 23 27 27 C 1.36108 * 119.61242 * 180.02562 * 26 25 24 28 28 C 1.39371 * 121.13149 * 359.96434 * 27 26 25 29 29 C 1.36340 * 120.88532 * 0.06089 * 28 27 26 30 30 C 1.39857 * 119.49889 * 359.95786 * 29 28 27 31 31 H 1.08993 * 109.47495 * 304.38133 * 1 2 3 32 32 H 1.08999 * 109.47622 * 64.38603 * 1 2 3 33 33 H 1.09008 * 109.47346 * 184.38307 * 1 2 3 34 34 H 1.08998 * 109.56108 * 65.66396 * 4 2 1 35 35 H 1.08998 * 109.38278 * 305.63439 * 4 2 1 36 36 H 0.96998 * 119.99966 * 334.94172 * 7 5 4 37 37 H 0.96996 * 119.99782 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.49717 * 178.68648 * 16 5 4 39 39 H 1.09002 * 109.49830 * 58.58431 * 16 5 4 40 40 H 1.09010 * 109.58401 * 294.84358 * 17 16 5 41 41 H 1.08993 * 109.70441 * 174.49389 * 17 16 5 42 42 H 1.07997 * 119.83276 * 0.02682 * 22 21 19 43 43 H 1.08005 * 120.19328 * 359.75350 * 26 25 24 44 44 H 1.08000 * 119.43441 * 179.97438 * 27 26 25 45 45 H 1.08011 * 119.55689 * 180.02562 * 28 27 26 46 46 H 1.08000 * 120.24985 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0402 -0.7225 -1.2455 5 6 3.5638 -0.8461 -1.1726 6 1 4.0057 0.1476 -1.0996 7 7 4.0578 -1.5121 -2.3803 8 6 5.3420 -1.2967 -2.8043 9 1 5.9907 -0.6363 -2.2481 10 6 5.8099 -1.9274 -3.9489 11 7 5.0191 -2.7319 -4.6271 12 14 7.5618 -1.6343 -4.5270 13 1 8.2395 -0.6957 -3.5968 14 1 8.2976 -2.9240 -4.5511 15 1 7.5415 -1.0503 -5.8922 16 6 3.9523 -1.6685 0.0582 17 6 3.4644 -0.9518 1.3211 18 7 2.0225 -0.6995 1.1945 19 6 1.1674 -1.1069 2.1532 20 8 -0.0311 -0.9879 1.9892 21 6 1.6870 -1.6987 3.4047 22 6 2.6289 -1.0367 4.1825 23 7 3.0806 -1.5876 5.3007 24 7 2.6933 -2.7334 5.7314 25 6 1.7917 -3.4653 5.0733 26 6 1.3696 -4.7199 5.5467 27 6 0.4479 -5.4299 4.8403 28 6 -0.0875 -4.9346 3.6527 29 6 0.2985 -3.7222 3.1630 30 6 1.2440 -2.9660 3.8632 31 1 -0.3634 0.5803 0.8481 32 1 -0.3634 0.4442 -0.9266 33 1 -0.3634 -1.0247 0.0785 34 1 1.7632 -0.1566 -2.1349 35 1 1.5964 -1.7169 -1.2942 36 1 3.4752 -2.1054 -2.8798 37 1 5.3460 -3.1723 -5.4271 38 1 5.0363 -1.7759 0.0966 39 1 3.4905 -2.6541 -0.0022 40 1 3.9928 -0.0047 1.4311 41 1 3.6506 -1.5775 2.1939 42 1 2.9950 -0.0684 3.8747 43 1 1.7774 -5.1199 6.4633 44 1 0.1260 -6.3936 5.2064 45 1 -0.8177 -5.5193 3.1128 46 1 -0.1228 -3.3484 2.2415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044758001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:11 Heat of formation + Delta-G solvation = 75.826362 kcal Electronic energy + Delta-G solvation = -29703.373129 eV Core-core repulsion = 25787.467525 eV Total energy + Delta-G solvation = -3915.905605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.88368 -40.35342 -38.18146 -37.59272 -34.71387 -34.40465 -32.47963 -32.05821 -31.94577 -30.64601 -29.38833 -27.25538 -26.10736 -24.74457 -24.39667 -23.40531 -23.03125 -21.78348 -20.39108 -19.55340 -18.90507 -18.54203 -17.35594 -17.12093 -16.17448 -16.08587 -15.63367 -15.42300 -15.05178 -14.91525 -14.71351 -14.32037 -14.04170 -13.93891 -13.76326 -13.38607 -13.18436 -12.75890 -12.71939 -12.67493 -12.32425 -12.26186 -12.16027 -11.70016 -11.59632 -11.16899 -11.01656 -10.98172 -10.90723 -10.88186 -10.55540 -10.34947 -10.26269 -9.92457 -9.78925 -9.72083 -9.22278 -8.99350 -8.72673 -8.63307 -7.05702 -5.84326 -3.14084 -0.53219 0.28198 1.28842 2.28483 2.46826 2.74799 3.38079 3.43965 3.46120 3.54894 3.63252 3.93467 3.97514 4.10771 4.42077 4.50908 4.53321 4.73253 4.79600 4.85229 5.00464 5.05329 5.15269 5.22065 5.23726 5.35441 5.42666 5.43998 5.53377 5.55370 5.67612 5.73182 5.78761 5.86445 5.88908 5.96934 6.00842 6.14790 6.21153 6.29375 6.32232 6.33882 6.42175 6.60004 6.77182 6.92621 7.22351 7.62662 7.87983 8.27611 8.33614 9.45243 10.01447 10.36009 11.38103 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.002966 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.005057 B = 9438.109950 C = 9917.447099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.147 3.853 3 H 0.077 0.923 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.050 0.950 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 C -0.150 4.150 17 C 0.101 3.899 18 N -0.588 5.588 19 C 0.563 3.437 20 O -0.519 6.519 21 C -0.094 4.094 22 C 0.043 3.957 23 N -0.220 5.220 24 N -0.194 5.194 25 C 0.063 3.937 26 C -0.078 4.078 27 C -0.096 4.096 28 C -0.089 4.089 29 C -0.096 4.096 30 C -0.030 4.030 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.178 0.822 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 -0.833 18.641 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.045 3.955 3 H 0.095 0.905 4 C -0.175 4.175 5 C 0.069 3.931 6 H 0.068 0.932 7 N -0.363 5.363 8 C -0.373 4.373 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.218 1.218 16 C -0.191 4.191 17 C -0.022 4.022 18 N -0.320 5.320 19 C 0.349 3.651 20 O -0.397 6.397 21 C -0.110 4.110 22 C -0.109 4.109 23 N -0.072 5.072 24 N -0.048 5.048 25 C -0.066 4.066 26 C -0.099 4.099 27 C -0.116 4.116 28 C -0.109 4.109 29 C -0.115 4.115 30 C -0.040 4.040 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.195 0.805 43 H 0.164 0.836 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.326 -0.504 19.704 22.252 hybrid contribution 0.086 -0.270 -1.802 1.824 sum -10.240 -0.774 17.902 20.638 Atomic orbital electron populations 1.22227 0.92626 1.03778 1.00762 1.21344 0.95586 0.95216 0.83382 0.90504 1.22238 0.97663 1.01112 0.96456 1.20161 0.90876 0.95035 0.87064 0.93243 1.42424 1.12952 1.54625 1.26316 1.19271 0.89041 1.22542 1.06422 0.91068 1.24755 0.98185 0.99754 0.98117 1.69673 1.35283 1.33697 1.19268 0.86140 0.84416 0.77333 0.78415 1.20503 1.21854 1.21824 1.22694 1.01990 1.00017 0.94439 1.22049 0.79061 1.01026 1.00058 1.48191 1.07849 1.56157 1.19810 1.17869 0.86283 0.78513 0.82467 1.90882 1.14687 1.55497 1.78611 1.21306 0.96982 0.95155 0.97508 1.24294 0.93151 1.01385 0.92052 1.73039 1.19061 1.04050 1.11049 1.73613 1.07235 0.99591 1.24370 1.20329 0.96381 0.97096 0.92793 1.20809 0.96882 0.91618 1.00575 1.21098 0.95768 1.00221 0.94540 1.21213 0.98743 0.95302 0.95612 1.21118 0.95691 0.94310 1.00387 1.18613 0.96741 0.93598 0.95002 0.91426 0.93389 0.91010 0.90239 0.91712 0.78233 0.93497 0.90322 0.92201 0.90656 0.90865 0.80547 0.83609 0.84344 0.84493 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.59 37.15 0.28 -1.46 16 2 C 0.15 1.91 3.47 -67.82 -0.24 1.68 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.14 -2.09 4.81 -26.83 -0.13 -2.22 16 5 C 0.18 3.24 2.73 -67.89 -0.19 3.05 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 7 N -0.72 -17.14 5.12 -53.39 -0.27 -17.42 16 8 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 12 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 17 C 0.10 1.26 5.64 -3.71 -0.02 1.24 16 18 N -0.59 -7.50 2.98 -166.57 -0.50 -8.00 16 19 C 0.56 7.43 6.51 -12.32 -0.08 7.35 16 20 O -0.52 -7.69 11.29 5.32 0.06 -7.63 16 21 C -0.09 -1.17 4.66 -104.31 -0.49 -1.65 16 22 C 0.04 0.50 9.10 -16.97 -0.15 0.35 16 23 N -0.22 -2.88 11.47 30.73 0.35 -2.53 16 24 N -0.19 -2.56 11.53 32.22 0.37 -2.19 16 25 C 0.06 0.76 6.69 -84.86 -0.57 0.19 16 26 C -0.08 -0.69 10.01 -39.46 -0.40 -1.08 16 27 C -0.10 -0.69 9.94 -39.93 -0.40 -1.08 16 28 C -0.09 -0.73 9.96 -39.84 -0.40 -1.13 16 29 C -0.10 -1.05 9.30 -39.66 -0.37 -1.42 16 30 C -0.03 -0.38 5.77 -106.50 -0.61 -0.99 16 31 H 0.07 0.89 6.81 -51.93 -0.35 0.54 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.01 6.68 -51.92 -0.35 0.67 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.38 9.83 7.80 -40.82 -0.32 9.51 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.07 0.87 5.39 -51.93 -0.28 0.59 16 42 H 0.18 1.59 7.79 -52.49 -0.41 1.18 16 43 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 44 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.14 1.65 6.63 -52.49 -0.35 1.31 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -31.50 370.08 -9.10 -40.60 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.25 Total: 8.26 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -4.15 Total: -6.74 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.68 Total: -56.84 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.06 Total: -7.63 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.50 -9.10 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.426 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds