Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.70283 * 2 1 4 4 C 1.53189 * 109.58636 * 239.64649 * 2 1 3 5 5 C 1.53033 * 109.31467 * 294.84878 * 4 2 1 6 6 H 1.09004 * 109.46343 * 58.64097 * 5 4 2 7 7 N 1.46508 * 109.46201 * 178.61284 * 5 4 2 8 8 C 1.36933 * 119.99849 * 205.03000 * 7 5 4 9 9 H 1.07997 * 120.00536 * 359.97438 * 8 7 5 10 10 C 1.38814 * 119.99674 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00082 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99813 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46822 * 90.00407 * 12 10 8 14 14 H 1.48494 * 109.47606 * 330.00590 * 12 10 8 15 15 H 1.48504 * 109.47396 * 209.99946 * 12 10 8 16 16 C 1.53042 * 109.52854 * 298.62668 * 5 4 2 17 17 C 1.53193 * 109.30960 * 61.38345 * 16 5 4 18 18 N 1.46924 * 109.58873 * 120.35767 * 2 1 3 19 19 C 1.34775 * 120.63245 * 246.20388 * 18 2 1 20 20 O 1.21544 * 119.99993 * 354.20566 * 19 18 2 21 21 C 1.47874 * 119.99960 * 174.21297 * 19 18 2 22 22 C 1.38952 * 121.42261 * 306.18442 * 21 19 18 23 23 N 1.32573 * 120.34138 * 180.02562 * 22 21 19 24 24 N 1.28380 * 123.43301 * 359.97438 * 23 22 21 25 25 C 1.33466 * 121.85373 * 0.02562 * 24 23 22 26 26 C 1.40585 * 121.73895 * 179.97438 * 25 24 23 27 27 C 1.36114 * 119.61316 * 180.02562 * 26 25 24 28 28 C 1.39371 * 121.12718 * 0.02562 * 27 26 25 29 29 C 1.36343 * 120.89151 * 359.97438 * 28 27 26 30 30 C 1.39865 * 119.49405 * 359.72072 * 29 28 27 31 31 H 1.08991 * 109.46847 * 180.35420 * 1 2 3 32 32 H 1.09004 * 109.46640 * 300.35075 * 1 2 3 33 33 H 1.09001 * 109.47075 * 60.34950 * 1 2 3 34 34 H 1.09004 * 109.49835 * 174.89483 * 4 2 1 35 35 H 1.09008 * 109.49773 * 54.80181 * 4 2 1 36 36 H 0.96991 * 119.99438 * 25.02669 * 7 5 4 37 37 H 0.96995 * 119.99886 * 359.97438 * 11 10 8 38 38 H 1.09001 * 109.49750 * 181.31981 * 16 5 4 39 39 H 1.08999 * 109.49747 * 301.42138 * 16 5 4 40 40 H 1.08999 * 109.58232 * 185.56499 * 17 16 5 41 41 H 1.09004 * 109.71806 * 65.20610 * 17 16 5 42 42 H 1.07996 * 119.83030 * 359.97111 * 22 21 19 43 43 H 1.07997 * 120.19462 * 359.97438 * 26 25 24 44 44 H 1.07994 * 119.43609 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.55633 * 180.02562 * 28 27 26 46 46 H 1.07998 * 120.25792 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 1.6415 -2.2040 -1.1702 6 1 0.5565 -2.2814 -1.0992 7 7 2.1024 -2.8976 -2.3756 8 6 1.4646 -4.0334 -2.7980 9 1 0.6221 -4.4181 -2.2425 10 6 1.9010 -4.6903 -3.9404 11 7 2.9280 -4.2218 -4.6171 12 14 1.0314 -6.2400 -4.5162 13 1 -0.0669 -5.8747 -5.4467 14 1 0.4688 -6.9568 -3.3437 15 1 2.0009 -7.1206 -5.2163 16 6 2.2803 -2.8462 0.0633 17 6 1.7692 -2.1411 1.3236 18 7 2.0226 -0.6996 1.1944 19 6 2.6937 -0.0317 2.1536 20 8 2.9886 1.1358 1.9882 21 6 3.0713 -0.7193 3.4071 22 6 2.1271 -1.3790 4.1842 23 7 2.4893 -1.9881 5.3046 24 7 3.6975 -2.0122 5.7379 25 6 4.6936 -1.4149 5.0804 26 6 6.0158 -1.4423 5.5573 27 6 6.9983 -0.8179 4.8520 28 6 6.7171 -0.1492 3.6619 29 6 5.4469 -0.1017 3.1689 30 6 4.4139 -0.7380 3.8649 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3633 0.5193 0.8869 33 1 -0.3633 0.5084 -0.8931 34 1 3.1298 -0.6503 -1.2914 35 1 1.6075 -0.2783 -2.1369 36 1 2.8592 -2.5523 -2.8743 37 1 3.3797 -3.4173 -4.3179 38 1 2.0127 -3.9021 0.1035 39 1 3.3642 -2.7470 0.0049 40 1 2.2945 -2.5276 2.1969 41 1 0.6989 -2.3155 1.4341 42 1 1.0926 -1.3950 3.8743 43 1 6.2504 -1.9550 6.4784 44 1 8.0129 -0.8404 5.2212 45 1 7.5164 0.3373 3.1225 46 1 5.2406 0.4190 2.2456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044758003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = 61.740833 kcal Electronic energy + Delta-G solvation = -29694.538906 eV Core-core repulsion = 25778.022507 eV Total energy + Delta-G solvation = -3916.516399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.89958 -40.27000 -38.21907 -37.87696 -34.94577 -34.29747 -32.50858 -32.05500 -31.98389 -30.67718 -29.29093 -27.38623 -26.29856 -24.78186 -24.12726 -23.42044 -23.21146 -21.89181 -20.81209 -19.18483 -18.71187 -18.56689 -17.59150 -17.35371 -16.57950 -15.93455 -15.54870 -15.45010 -15.09117 -14.85136 -14.70932 -14.43969 -14.27260 -13.85115 -13.72267 -13.61963 -13.24442 -13.03118 -12.79478 -12.76249 -12.68752 -12.25087 -12.01551 -11.92170 -11.43758 -11.20459 -11.11115 -11.03586 -10.90319 -10.69300 -10.65001 -10.47606 -10.08882 -10.00188 -9.79938 -9.75440 -9.24375 -8.99147 -8.81494 -8.72148 -7.12852 -6.17070 -3.18123 -0.57151 0.24713 1.25155 2.23876 2.42980 2.68404 3.47230 3.51248 3.51498 3.59603 3.65529 3.88834 3.93466 4.06485 4.38673 4.49530 4.59277 4.69744 4.75574 4.79222 4.94164 5.01913 5.04359 5.12072 5.19244 5.27348 5.39485 5.40052 5.51204 5.51948 5.54981 5.62734 5.69841 5.73068 5.83266 5.85466 5.94027 5.98508 6.08432 6.15602 6.24134 6.26702 6.29055 6.39584 6.69078 6.84873 7.14855 7.73220 7.78604 8.23948 8.68401 9.14264 10.00788 10.15360 11.31085 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.002968 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.275135 B = 9432.139671 C = 9891.679937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.099 0.901 4 C -0.135 4.135 5 C 0.185 3.815 6 H 0.054 0.946 7 N -0.735 5.735 8 C -0.333 4.333 9 H 0.065 0.935 10 C -0.043 4.043 11 N -0.943 5.943 12 Si 1.081 2.919 13 H -0.295 1.295 14 H -0.294 1.294 15 H -0.288 1.288 16 C -0.149 4.149 17 C 0.101 3.899 18 N -0.587 5.587 19 C 0.565 3.435 20 O -0.528 6.528 21 C -0.093 4.093 22 C 0.045 3.955 23 N -0.219 5.219 24 N -0.192 5.192 25 C 0.063 3.937 26 C -0.077 4.077 27 C -0.096 4.096 28 C -0.088 4.088 29 C -0.098 4.098 30 C -0.030 4.030 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.366 0.634 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.178 0.822 43 H 0.147 0.853 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 9.311 18.891 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.117 0.883 4 C -0.174 4.174 5 C 0.074 3.926 6 H 0.072 0.928 7 N -0.376 5.376 8 C -0.464 4.464 9 H 0.083 0.917 10 C -0.241 4.241 11 N -0.588 5.588 12 Si 0.912 3.088 13 H -0.223 1.223 14 H -0.221 1.221 15 H -0.214 1.214 16 C -0.191 4.191 17 C -0.022 4.022 18 N -0.319 5.319 19 C 0.350 3.650 20 O -0.405 6.405 21 C -0.109 4.109 22 C -0.107 4.107 23 N -0.071 5.071 24 N -0.047 5.047 25 C -0.066 4.066 26 C -0.098 4.098 27 C -0.116 4.116 28 C -0.107 4.107 29 C -0.116 4.116 30 C -0.039 4.039 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.200 0.800 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.195 0.805 43 H 0.165 0.835 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.825 7.767 18.933 20.659 hybrid contribution 0.628 1.981 -0.176 2.085 sum 3.453 9.748 18.757 21.419 Atomic orbital electron populations 1.22161 0.94453 1.03077 1.02292 1.21293 0.94332 0.97111 0.83329 0.88270 1.22242 1.01325 0.97349 0.96467 1.20131 0.96984 0.88805 0.86655 0.92763 1.42439 1.37771 1.30116 1.27302 1.20045 1.12886 1.03173 1.10328 0.91684 1.25764 0.99346 1.04371 0.94623 1.70852 1.22104 1.24362 1.41448 0.83217 0.75030 0.75156 0.75402 1.22269 1.22115 1.21381 1.22667 1.01081 1.00777 0.94542 1.22028 1.01418 0.78790 0.99971 1.48221 1.53963 1.09795 1.19918 1.17843 0.78336 0.86221 0.82564 1.90803 1.54441 1.16005 1.79286 1.21174 0.94240 0.98167 0.97273 1.24290 1.01321 0.93096 0.92013 1.73045 1.10122 1.13025 1.10946 1.73610 0.94893 1.11696 1.24453 1.20329 0.96291 0.97298 0.92662 1.20817 0.89389 0.99012 1.00587 1.21105 1.00024 0.95953 0.94533 1.21217 0.96830 0.97115 0.95586 1.21121 0.91979 0.98058 1.00477 1.18620 0.93251 0.97048 0.95011 0.91426 0.92628 0.90935 0.91894 0.90304 0.80038 0.93340 0.90310 0.92367 0.90858 0.90610 0.80516 0.83543 0.84281 0.84455 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.02 37.16 0.34 -1.51 16 2 C 0.14 1.86 3.22 -67.60 -0.22 1.64 16 3 H 0.10 1.34 7.00 -51.93 -0.36 0.98 16 4 C -0.13 -2.08 5.02 -26.62 -0.13 -2.21 16 5 C 0.18 3.34 2.52 -67.89 -0.17 3.17 16 6 H 0.05 1.00 6.44 -51.93 -0.33 0.67 16 7 N -0.73 -17.38 5.12 -53.38 -0.27 -17.66 16 8 C -0.33 -8.94 9.93 -15.06 -0.15 -9.09 16 9 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 10 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 11 N -0.94 -28.50 13.70 55.49 0.76 -27.74 16 12 Si 1.08 25.31 29.92 -169.99 -5.09 20.23 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 17 C 0.10 1.27 5.22 -3.71 -0.02 1.26 16 18 N -0.59 -7.61 2.68 -166.31 -0.45 -8.06 16 19 C 0.56 7.75 6.60 -12.32 -0.08 7.67 16 20 O -0.53 -8.47 15.32 5.33 0.08 -8.38 16 21 C -0.09 -1.18 4.66 -104.30 -0.49 -1.67 16 22 C 0.05 0.53 9.11 -16.97 -0.15 0.37 16 23 N -0.22 -2.88 11.47 30.73 0.35 -2.53 16 24 N -0.19 -2.54 11.52 32.21 0.37 -2.17 16 25 C 0.06 0.76 6.69 -84.87 -0.57 0.19 16 26 C -0.08 -0.68 10.01 -39.46 -0.39 -1.08 16 27 C -0.10 -0.69 9.94 -39.92 -0.40 -1.08 16 28 C -0.09 -0.73 9.96 -39.84 -0.40 -1.12 16 29 C -0.10 -1.09 9.30 -39.66 -0.37 -1.46 16 30 C -0.03 -0.38 5.77 -106.50 -0.61 -0.99 16 31 H 0.07 0.80 5.72 -51.93 -0.30 0.50 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 36 H 0.37 9.10 6.63 -40.82 -0.27 8.83 16 37 H 0.26 7.60 6.77 -40.82 -0.28 7.32 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.88 5.39 -51.93 -0.28 0.60 16 41 H 0.08 0.84 7.49 -51.93 -0.39 0.45 16 42 H 0.18 1.60 7.79 -52.49 -0.41 1.20 16 43 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.14 1.70 6.63 -52.49 -0.35 1.35 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -32.98 369.88 -8.71 -41.69 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.98 Total: 8.86 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -4.06 Total: -9.82 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.76 Total: -58.15 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.09 Total: 20.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.98 -8.71 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.433 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds