Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.70283 * 2 1 4 4 C 1.53189 * 109.58636 * 239.64649 * 2 1 3 5 5 C 1.53033 * 109.31467 * 294.84878 * 4 2 1 6 6 H 1.09004 * 109.46343 * 58.64097 * 5 4 2 7 7 N 1.46508 * 109.46201 * 178.61284 * 5 4 2 8 8 C 1.36933 * 119.99849 * 205.03000 * 7 5 4 9 9 H 1.07997 * 120.00536 * 359.97438 * 8 7 5 10 10 C 1.38814 * 119.99674 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00082 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99813 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46822 * 90.00407 * 12 10 8 14 14 H 1.48494 * 109.47606 * 330.00590 * 12 10 8 15 15 H 1.48504 * 109.47396 * 209.99946 * 12 10 8 16 16 C 1.53042 * 109.52854 * 298.62668 * 5 4 2 17 17 C 1.53193 * 109.30960 * 61.38345 * 16 5 4 18 18 N 1.46924 * 109.58873 * 120.35767 * 2 1 3 19 19 C 1.34775 * 120.63245 * 246.20388 * 18 2 1 20 20 O 1.21544 * 119.99993 * 354.20566 * 19 18 2 21 21 C 1.47874 * 119.99960 * 174.21297 * 19 18 2 22 22 C 1.38952 * 121.42261 * 306.18442 * 21 19 18 23 23 N 1.32573 * 120.34138 * 180.02562 * 22 21 19 24 24 N 1.28380 * 123.43301 * 359.97438 * 23 22 21 25 25 C 1.33466 * 121.85373 * 0.02562 * 24 23 22 26 26 C 1.40585 * 121.73895 * 179.97438 * 25 24 23 27 27 C 1.36114 * 119.61316 * 180.02562 * 26 25 24 28 28 C 1.39371 * 121.12718 * 0.02562 * 27 26 25 29 29 C 1.36343 * 120.89151 * 359.97438 * 28 27 26 30 30 C 1.39865 * 119.49405 * 359.72072 * 29 28 27 31 31 H 1.08991 * 109.46847 * 180.35420 * 1 2 3 32 32 H 1.09004 * 109.46640 * 300.35075 * 1 2 3 33 33 H 1.09001 * 109.47075 * 60.34950 * 1 2 3 34 34 H 1.09004 * 109.49835 * 174.89483 * 4 2 1 35 35 H 1.09008 * 109.49773 * 54.80181 * 4 2 1 36 36 H 0.96991 * 119.99438 * 25.02669 * 7 5 4 37 37 H 0.96995 * 119.99886 * 359.97438 * 11 10 8 38 38 H 1.09001 * 109.49750 * 181.31981 * 16 5 4 39 39 H 1.08999 * 109.49747 * 301.42138 * 16 5 4 40 40 H 1.08999 * 109.58232 * 185.56499 * 17 16 5 41 41 H 1.09004 * 109.71806 * 65.20610 * 17 16 5 42 42 H 1.07996 * 119.83030 * 359.97111 * 22 21 19 43 43 H 1.07997 * 120.19462 * 359.97438 * 26 25 24 44 44 H 1.07994 * 119.43609 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.55633 * 180.02562 * 28 27 26 46 46 H 1.07998 * 120.25792 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 1.6415 -2.2040 -1.1702 6 1 0.5565 -2.2814 -1.0992 7 7 2.1024 -2.8976 -2.3756 8 6 1.4646 -4.0334 -2.7980 9 1 0.6221 -4.4181 -2.2425 10 6 1.9010 -4.6903 -3.9404 11 7 2.9280 -4.2218 -4.6171 12 14 1.0314 -6.2400 -4.5162 13 1 -0.0669 -5.8747 -5.4467 14 1 0.4688 -6.9568 -3.3437 15 1 2.0009 -7.1206 -5.2163 16 6 2.2803 -2.8462 0.0633 17 6 1.7692 -2.1411 1.3236 18 7 2.0226 -0.6996 1.1944 19 6 2.6937 -0.0317 2.1536 20 8 2.9886 1.1358 1.9882 21 6 3.0713 -0.7193 3.4071 22 6 2.1271 -1.3790 4.1842 23 7 2.4893 -1.9881 5.3046 24 7 3.6975 -2.0122 5.7379 25 6 4.6936 -1.4149 5.0804 26 6 6.0158 -1.4423 5.5573 27 6 6.9983 -0.8179 4.8520 28 6 6.7171 -0.1492 3.6619 29 6 5.4469 -0.1017 3.1689 30 6 4.4139 -0.7380 3.8649 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3633 0.5193 0.8869 33 1 -0.3633 0.5084 -0.8931 34 1 3.1298 -0.6503 -1.2914 35 1 1.6075 -0.2783 -2.1369 36 1 2.8592 -2.5523 -2.8743 37 1 3.3797 -3.4173 -4.3179 38 1 2.0127 -3.9021 0.1035 39 1 3.3642 -2.7470 0.0049 40 1 2.2945 -2.5276 2.1969 41 1 0.6989 -2.3155 1.4341 42 1 1.0926 -1.3950 3.8743 43 1 6.2504 -1.9550 6.4784 44 1 8.0129 -0.8404 5.2212 45 1 7.5164 0.3373 3.1225 46 1 5.2406 0.4190 2.2456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044758003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = 40.990215 kcal Electronic energy + Delta-G solvation = -29695.438720 eV Core-core repulsion = 25778.022507 eV Total energy + Delta-G solvation = -3917.416213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.79711 -41.36048 -39.19969 -38.93888 -36.60923 -35.28360 -33.93648 -33.36209 -32.80045 -31.51503 -30.88553 -28.66466 -27.21462 -25.81820 -25.58203 -24.66793 -24.36704 -23.12983 -21.97480 -20.10836 -19.75045 -19.54475 -19.27883 -18.58964 -17.68297 -16.83845 -16.59935 -16.39067 -16.22931 -16.18907 -16.00863 -15.53757 -15.50851 -15.20670 -15.03977 -14.72335 -14.52220 -14.21051 -13.94567 -13.59268 -13.49523 -13.37138 -13.05222 -12.92736 -12.80045 -12.66060 -12.42657 -12.20004 -12.08875 -12.03984 -11.94899 -11.88208 -11.66763 -11.51858 -11.09256 -10.92617 -10.77221 -10.52837 -9.93919 -9.54052 -9.13236 -8.37587 -5.32391 -1.43114 -0.55936 0.44732 1.20682 1.53518 1.59019 1.68997 1.72833 1.82540 2.69337 2.71041 2.75936 2.92604 3.09778 3.23687 3.40385 3.54583 3.62467 3.67608 3.71904 3.84370 3.93135 4.02585 4.09483 4.09920 4.17271 4.26627 4.39408 4.41866 4.42397 4.49429 4.60934 4.65697 4.69403 4.80076 4.88639 4.91714 4.93254 4.94543 5.13517 5.16639 5.21169 5.24032 5.36650 5.45699 5.60176 5.61883 6.05547 6.50033 6.70863 7.09224 7.33729 7.99003 8.11605 9.14155 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.002968 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.275135 B = 9432.139671 C = 9891.679937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 H 0.097 0.903 4 C -0.124 4.124 5 C 0.181 3.819 6 H 0.059 0.941 7 N -0.749 5.749 8 C -0.324 4.324 9 H 0.071 0.929 10 C -0.106 4.106 11 N -0.979 5.979 12 Si 1.127 2.873 13 H -0.285 1.285 14 H -0.271 1.271 15 H -0.297 1.297 16 C -0.140 4.140 17 C 0.112 3.888 18 N -0.585 5.585 19 C 0.571 3.429 20 O -0.555 6.555 21 C -0.112 4.112 22 C 0.050 3.950 23 N -0.241 5.241 24 N -0.206 5.206 25 C 0.047 3.953 26 C -0.081 4.081 27 C -0.083 4.083 28 C -0.068 4.068 29 C -0.131 4.131 30 C -0.043 4.043 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.356 0.644 37 H 0.243 0.757 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.201 0.799 43 H 0.169 0.831 44 H 0.182 0.818 45 H 0.167 0.833 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.473 9.327 20.837 23.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 H 0.115 0.885 4 C -0.163 4.163 5 C 0.073 3.927 6 H 0.076 0.924 7 N -0.390 5.390 8 C -0.455 4.455 9 H 0.089 0.911 10 C -0.297 4.297 11 N -0.627 5.627 12 Si 0.952 3.048 13 H -0.212 1.212 14 H -0.196 1.196 15 H -0.224 1.224 16 C -0.181 4.181 17 C -0.010 4.010 18 N -0.316 5.316 19 C 0.358 3.642 20 O -0.434 6.434 21 C -0.127 4.127 22 C -0.102 4.102 23 N -0.093 5.093 24 N -0.060 5.060 25 C -0.083 4.083 26 C -0.102 4.102 27 C -0.103 4.103 28 C -0.088 4.088 29 C -0.150 4.150 30 C -0.052 4.052 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.188 0.812 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.217 0.783 43 H 0.187 0.813 44 H 0.200 0.800 45 H 0.185 0.815 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.854 7.798 20.945 22.531 hybrid contribution 0.753 2.061 -0.704 2.305 sum 3.607 9.859 20.241 22.802 Atomic orbital electron populations 1.22121 0.92519 1.03296 1.03441 1.21232 0.95703 0.96449 0.82126 0.88486 1.22102 1.00506 0.95799 0.97927 1.20361 0.97117 0.89963 0.85281 0.92354 1.42680 1.37442 1.29911 1.28995 1.20384 1.12206 1.03389 1.09555 0.91137 1.27108 0.99782 1.07231 0.95560 1.70963 1.24015 1.24870 1.42859 0.82626 0.74157 0.72153 0.75852 1.21234 1.19638 1.22413 1.22444 0.99842 1.00210 0.95569 1.21955 1.02868 0.78113 0.98111 1.48203 1.53796 1.09807 1.19775 1.17942 0.77535 0.85835 0.82857 1.90781 1.55360 1.17242 1.79969 1.21112 0.94971 0.99435 0.97194 1.24559 1.02093 0.92219 0.91316 1.72987 1.10398 1.14151 1.11752 1.73506 0.95297 1.12145 1.25067 1.20697 0.97355 0.97540 0.92661 1.21217 0.88288 0.99114 1.01546 1.21575 1.01577 0.93876 0.93290 1.21673 0.96266 0.95284 0.95553 1.21126 0.93267 0.99847 1.00770 1.18858 0.93564 0.97314 0.95485 0.91570 0.91190 0.90160 0.93251 0.90451 0.81211 0.94631 0.91714 0.94167 0.89833 0.88063 0.78257 0.81306 0.80028 0.81547 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 9.02 71.98 0.65 -2.59 16 2 C 0.15 3.75 3.22 44.98 0.14 3.89 16 3 H 0.10 2.58 7.00 -2.39 -0.02 2.56 16 4 C -0.12 -3.85 5.02 30.67 0.15 -3.70 16 5 C 0.18 6.55 2.52 45.01 0.11 6.66 16 6 H 0.06 2.09 6.44 -2.38 -0.02 2.07 16 7 N -0.75 -36.09 5.12 -322.80 -1.65 -37.74 16 8 C -0.32 -17.43 9.93 84.03 0.83 -16.59 16 9 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 10 C -0.11 -6.00 5.50 84.86 0.47 -5.54 16 11 N -0.98 -60.61 13.70 21.65 0.30 -60.32 16 12 Si 1.13 50.97 29.92 68.60 2.05 53.02 16 13 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 15 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 16 C -0.14 -4.55 5.66 30.67 0.17 -4.38 16 17 C 0.11 2.69 5.22 86.36 0.45 3.14 16 18 N -0.58 -14.69 2.68 -798.37 -2.14 -16.83 16 19 C 0.57 15.53 6.60 86.80 0.57 16.10 16 20 O -0.55 -17.90 15.32 -3.86 -0.06 -17.95 16 21 C -0.11 -2.80 4.66 -19.66 -0.09 -2.90 16 22 C 0.05 1.14 9.11 84.75 0.77 1.91 16 23 N -0.24 -6.21 11.47 -56.69 -0.65 -6.86 16 24 N -0.21 -5.34 11.52 -51.99 -0.60 -5.94 16 25 C 0.05 1.09 6.69 40.38 0.27 1.36 16 26 C -0.08 -1.23 10.01 22.35 0.22 -1.01 16 27 C -0.08 -0.89 9.94 22.05 0.22 -0.67 16 28 C -0.07 -0.96 9.96 22.10 0.22 -0.74 16 29 C -0.13 -2.87 9.30 22.22 0.21 -2.66 16 30 C -0.04 -1.06 5.77 -21.08 -0.12 -1.19 16 31 H 0.07 1.40 5.72 -2.39 -0.01 1.39 16 32 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.36 18.37 6.63 -92.71 -0.61 17.76 16 37 H 0.24 15.04 6.77 -92.71 -0.63 14.42 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.91 5.39 -2.39 -0.01 1.89 16 41 H 0.10 1.98 7.49 -2.38 -0.02 1.97 16 42 H 0.20 3.28 7.79 -2.91 -0.02 3.26 16 43 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 45 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.13 3.12 6.63 -2.91 -0.02 3.10 16 Total: -1.00 -73.70 369.88 3.06 -70.64 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.55 Total: 30.85 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.26 Total: -8.88 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -4.74 Total: -127.68 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.06 Total: -17.95 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.02 kcal Total: -73.70 3.06 -70.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.635 kcal (2) G-P(sol) polarization free energy of solvation -73.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds