Wall clock time and date at job start Sat Apr 11 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.70197 * 2 1 4 4 C 1.53195 * 109.58442 * 120.35384 * 2 1 3 5 5 C 1.53031 * 109.31462 * 65.15280 * 4 2 1 6 6 H 1.09004 * 109.44824 * 301.35014 * 5 4 2 7 7 N 1.46498 * 109.46244 * 181.38689 * 5 4 2 8 8 C 1.36936 * 120.00148 * 154.92932 * 7 5 4 9 9 H 1.07997 * 120.00147 * 359.72725 * 8 7 5 10 10 C 1.38816 * 119.99990 * 179.72170 * 8 7 5 11 11 N 1.31614 * 119.99966 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99872 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47074 * 60.00368 * 12 10 8 14 14 H 1.48503 * 109.47055 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46966 * 299.99957 * 12 10 8 16 16 C 1.53036 * 109.54028 * 61.36270 * 5 4 2 17 17 C 1.53195 * 109.31502 * 298.64078 * 16 5 4 18 18 N 1.46918 * 109.58984 * 239.64099 * 2 1 3 19 19 C 1.34783 * 120.63097 * 113.84506 * 18 2 1 20 20 O 1.21540 * 119.99853 * 355.99547 * 19 18 2 21 21 C 1.47865 * 120.00012 * 175.99851 * 19 18 2 22 22 C 1.38956 * 121.42560 * 53.26973 * 21 19 18 23 23 N 1.32578 * 120.34150 * 179.97438 * 22 21 19 24 24 N 1.28378 * 123.43280 * 0.03037 * 23 22 21 25 25 C 1.33463 * 121.85498 * 359.97438 * 24 23 22 26 26 C 1.40587 * 121.73850 * 179.97438 * 25 24 23 27 27 C 1.36113 * 119.61012 * 180.02562 * 26 25 24 28 28 C 1.39367 * 121.12775 * 359.97438 * 27 26 25 29 29 C 1.36338 * 120.89536 * 359.97438 * 28 27 26 30 30 C 1.39860 * 119.49602 * 359.76505 * 29 28 27 31 31 H 1.08993 * 109.47347 * 180.35642 * 1 2 3 32 32 H 1.08997 * 109.46862 * 300.35953 * 1 2 3 33 33 H 1.09001 * 109.46831 * 60.35458 * 1 2 3 34 34 H 1.09004 * 109.49465 * 305.19807 * 4 2 1 35 35 H 1.09002 * 109.49914 * 185.10880 * 4 2 1 36 36 H 0.97004 * 120.00209 * 334.65771 * 7 5 4 37 37 H 0.97010 * 120.00026 * 180.02562 * 11 10 8 38 38 H 1.09010 * 109.49461 * 58.58955 * 16 5 4 39 39 H 1.08996 * 109.50238 * 178.68006 * 16 5 4 40 40 H 1.08995 * 109.58625 * 174.41951 * 17 16 5 41 41 H 1.09000 * 109.58259 * 294.70265 * 17 16 5 42 42 H 1.08000 * 119.82804 * 359.97438 * 22 21 19 43 43 H 1.07993 * 120.19039 * 359.97438 * 26 25 24 44 44 H 1.07997 * 119.43028 * 180.02562 * 27 26 25 45 45 H 1.08001 * 119.55314 * 180.02562 * 28 27 26 46 46 H 1.07991 * 120.25818 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2455 5 6 1.6414 -2.2040 1.1703 6 1 0.5564 -2.2812 1.0993 7 7 2.1022 -2.8977 2.3755 8 6 1.4639 -4.0330 2.7984 9 1 0.6181 -4.4146 2.2459 10 6 1.9042 -4.6935 3.9372 11 7 2.9348 -4.2282 4.6108 12 14 1.0339 -6.2426 4.5137 13 1 1.1057 -7.2758 3.4495 14 1 1.6922 -6.7517 5.7436 15 1 -0.3883 -5.9315 4.8066 16 6 2.2800 -2.8464 -0.0633 17 6 1.7692 -2.1410 -1.3236 18 7 2.0226 -0.6996 -1.1943 19 6 2.6946 -0.0318 -2.1531 20 8 2.8350 1.1726 -2.0701 21 6 3.2608 -0.7645 -3.3059 22 6 2.4762 -1.6044 -4.0868 23 7 3.0061 -2.2507 -5.1159 24 7 4.2406 -2.1512 -5.4539 25 6 5.0946 -1.3760 -4.7821 26 6 6.4461 -1.2693 -5.1540 27 6 7.2794 -0.4661 -4.4376 28 6 6.8162 0.2554 -3.3389 29 6 5.5119 0.1774 -2.9496 30 6 4.6266 -0.6341 -3.6664 31 1 -0.3634 -1.0276 0.0064 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5083 -0.8932 34 1 1.6074 -0.2783 2.1369 35 1 3.1297 -0.6503 1.2915 36 1 2.8620 -2.5550 2.8719 37 1 3.2427 -4.6900 5.4064 38 1 3.3640 -2.7474 -0.0050 39 1 2.0123 -3.9022 -0.1034 40 1 2.2945 -2.5275 -2.1969 41 1 0.6992 -2.3177 -1.4329 42 1 1.4292 -1.7314 -3.8541 43 1 6.8212 -1.8220 -6.0026 44 1 8.3170 -0.3860 -4.7261 45 1 7.4995 0.8854 -2.7888 46 1 5.1638 0.7413 -2.0969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044758005.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:18 Heat of formation + Delta-G solvation = 63.584179 kcal Electronic energy + Delta-G solvation = -29682.009087 eV Core-core repulsion = 25765.572621 eV Total energy + Delta-G solvation = -3916.436465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.87346 -40.21537 -38.19064 -37.80151 -34.73932 -34.24872 -32.41882 -31.96771 -31.91357 -30.62209 -29.45849 -27.43791 -26.26020 -24.79007 -24.28128 -23.42433 -23.10665 -21.77854 -20.69188 -19.14505 -18.68675 -18.57160 -17.53246 -17.10041 -16.48142 -15.88306 -15.51937 -15.41298 -15.02687 -14.94484 -14.67016 -14.26030 -14.10623 -13.83785 -13.63495 -13.54994 -13.08432 -12.92859 -12.76206 -12.70003 -12.62610 -12.22299 -11.92636 -11.76455 -11.42101 -11.16804 -11.06579 -10.99232 -10.93707 -10.86474 -10.64104 -10.51572 -10.28770 -9.84622 -9.73869 -9.73047 -9.69059 -8.97568 -8.77512 -8.67181 -7.05369 -5.83755 -3.13489 -0.53237 0.28200 1.29123 2.28146 2.46316 2.74613 3.38982 3.43846 3.44722 3.55010 3.63168 3.93543 3.97042 4.09853 4.42069 4.51511 4.52971 4.73552 4.79558 4.84771 4.99668 5.08215 5.11195 5.19412 5.22527 5.32918 5.42444 5.45669 5.52370 5.55566 5.61460 5.69743 5.74377 5.79032 5.86890 5.92807 5.97644 6.07507 6.16553 6.26665 6.29767 6.33233 6.39664 6.48083 6.76915 6.93324 7.20260 7.61830 7.83571 8.27649 8.34177 9.45613 10.02009 10.36461 11.38548 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013333 B = 0.003004 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.609014 B = 9318.587118 C = 9808.452014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.098 0.902 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.053 0.947 7 N -0.723 5.723 8 C -0.243 4.243 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.285 1.285 16 C -0.151 4.151 17 C 0.095 3.905 18 N -0.585 5.585 19 C 0.564 3.436 20 O -0.529 6.529 21 C -0.092 4.092 22 C 0.043 3.957 23 N -0.220 5.220 24 N -0.192 5.192 25 C 0.063 3.937 26 C -0.077 4.077 27 C -0.096 4.096 28 C -0.088 4.088 29 C -0.097 4.097 30 C -0.029 4.029 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.179 0.821 43 H 0.147 0.853 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 9.987 -17.810 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.116 0.884 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.071 0.929 7 N -0.363 5.363 8 C -0.374 4.374 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.192 4.192 17 C -0.028 4.028 18 N -0.317 5.317 19 C 0.350 3.650 20 O -0.407 6.407 21 C -0.108 4.108 22 C -0.109 4.109 23 N -0.072 5.072 24 N -0.047 5.047 25 C -0.066 4.066 26 C -0.098 4.098 27 C -0.116 4.116 28 C -0.108 4.108 29 C -0.116 4.116 30 C -0.038 4.038 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.217 0.783 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.196 0.804 43 H 0.164 0.836 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.827 9.452 -18.856 21.436 hybrid contribution 0.026 0.010 1.726 1.727 sum 3.853 9.461 -17.129 19.944 Atomic orbital electron populations 1.22150 0.94517 1.03047 1.02220 1.21309 0.94432 0.97022 0.83290 0.88387 1.22236 1.01406 0.97348 0.96304 1.20192 0.96905 0.89029 0.86993 0.92883 1.42416 1.37706 1.29531 1.26659 1.19173 1.10112 1.01263 1.06866 0.91198 1.24746 0.98368 0.99430 0.98167 1.69649 1.27232 1.41343 1.19731 0.86289 0.78846 0.83201 0.77959 1.21229 1.21683 1.21212 1.22702 1.01233 1.00728 0.94553 1.22159 1.01455 0.78917 1.00297 1.48218 1.53604 1.09895 1.19969 1.17822 0.78545 0.86771 0.81883 1.90799 1.59540 1.13256 1.77082 1.21174 0.94373 0.97611 0.97654 1.24325 1.02068 0.92396 0.92138 1.73045 1.05238 1.16701 1.12198 1.73603 0.97189 1.12130 1.21752 1.20327 0.96534 0.96033 0.93692 1.20812 0.90029 0.98645 1.00339 1.21099 1.00549 0.95332 0.94656 1.21209 0.95608 0.97864 0.96118 1.21123 0.93144 0.97420 0.99884 1.18602 0.92903 0.96779 0.95525 0.91432 0.90995 0.92682 0.90165 0.91810 0.78270 0.93396 0.92258 0.90356 0.90554 0.90498 0.80421 0.83573 0.84314 0.84469 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.03 37.16 0.34 -1.51 16 2 C 0.14 1.86 3.20 -67.60 -0.22 1.64 16 3 H 0.10 1.32 7.03 -51.93 -0.36 0.96 16 4 C -0.13 -2.05 5.02 -26.61 -0.13 -2.19 16 5 C 0.18 3.21 2.52 -67.90 -0.17 3.03 16 6 H 0.05 0.95 6.43 -51.93 -0.33 0.62 16 7 N -0.72 -17.06 5.12 -53.39 -0.27 -17.33 16 8 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 12 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 C -0.15 -2.43 5.66 -26.61 -0.15 -2.58 16 17 C 0.09 1.18 5.14 -3.71 -0.02 1.16 16 18 N -0.59 -7.59 2.68 -166.33 -0.45 -8.04 16 19 C 0.56 7.76 6.64 -12.32 -0.08 7.68 16 20 O -0.53 -8.46 15.29 5.33 0.08 -8.38 16 21 C -0.09 -1.19 4.96 -104.31 -0.52 -1.71 16 22 C 0.04 0.51 8.74 -16.96 -0.15 0.36 16 23 N -0.22 -2.93 11.47 30.73 0.35 -2.58 16 24 N -0.19 -2.58 11.52 32.22 0.37 -2.21 16 25 C 0.06 0.77 6.69 -84.86 -0.57 0.20 16 26 C -0.08 -0.70 10.01 -39.46 -0.39 -1.09 16 27 C -0.10 -0.70 9.94 -39.92 -0.40 -1.10 16 28 C -0.09 -0.74 9.96 -39.85 -0.40 -1.13 16 29 C -0.10 -1.09 9.29 -39.66 -0.37 -1.46 16 30 C -0.03 -0.37 5.77 -106.50 -0.61 -0.98 16 31 H 0.07 0.79 5.73 -51.93 -0.30 0.50 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.38 9.79 7.80 -40.82 -0.32 9.47 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 0.90 4.70 -51.93 -0.24 0.65 16 41 H 0.08 0.84 7.51 -51.93 -0.39 0.45 16 42 H 0.18 1.63 7.34 -52.49 -0.39 1.25 16 43 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 46 H 0.14 1.70 6.61 -52.49 -0.35 1.36 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -31.95 370.33 -8.75 -40.71 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.03 Total: 8.81 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -4.09 Total: -6.63 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.73 Total: -56.82 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.95 -8.75 -40.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758005.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.289 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds