Wall clock time and date at job start Sat Apr 11 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.70244 * 2 1 4 4 C 1.53188 * 109.58691 * 120.36294 * 2 1 3 5 5 C 1.53037 * 109.31122 * 174.42211 * 4 2 1 6 6 H 1.09000 * 109.46544 * 58.65279 * 5 4 2 7 7 N 1.46504 * 109.46127 * 178.61170 * 5 4 2 8 8 C 1.36935 * 120.00061 * 204.99939 * 7 5 4 9 9 H 1.08002 * 119.99865 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00056 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99875 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99946 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47146 * 89.99919 * 12 10 8 14 14 H 1.48502 * 109.46892 * 209.99576 * 12 10 8 15 15 H 1.48498 * 109.47192 * 329.99499 * 12 10 8 16 16 C 1.53081 * 109.65686 * 298.69397 * 5 4 2 17 17 C 1.53186 * 109.29531 * 61.15696 * 16 5 4 18 18 N 1.46925 * 109.58191 * 239.64781 * 2 1 3 19 19 C 1.34781 * 120.63516 * 6.62746 * 18 2 1 20 20 O 1.21553 * 119.99679 * 354.82573 * 19 18 2 21 21 C 1.47868 * 120.00250 * 174.83183 * 19 18 2 22 22 C 1.38951 * 121.41891 * 310.96346 * 21 19 18 23 23 N 1.32577 * 120.33639 * 180.02562 * 22 21 19 24 24 N 1.28381 * 123.43568 * 359.97438 * 23 22 21 25 25 C 1.33464 * 121.85418 * 0.02562 * 24 23 22 26 26 C 1.40572 * 121.73962 * 179.97438 * 25 24 23 27 27 C 1.36118 * 119.61680 * 180.02562 * 26 25 24 28 28 C 1.39377 * 121.12209 * 0.02562 * 27 26 25 29 29 C 1.36338 * 120.88860 * 0.02562 * 28 27 26 30 30 C 1.39855 * 119.50196 * 359.72761 * 29 28 27 31 31 H 1.09004 * 109.47395 * 176.98196 * 1 2 3 32 32 H 1.09004 * 109.46956 * 296.98448 * 1 2 3 33 33 H 1.08998 * 109.47465 * 56.97967 * 1 2 3 34 34 H 1.09001 * 109.49158 * 294.36616 * 4 2 1 35 35 H 1.08992 * 109.50256 * 54.43070 * 4 2 1 36 36 H 0.97001 * 119.99762 * 24.99655 * 7 5 4 37 37 H 0.97001 * 119.99848 * 180.02562 * 11 10 8 38 38 H 1.08991 * 109.38674 * 301.27475 * 16 5 4 39 39 H 1.09003 * 109.61850 * 181.17423 * 16 5 4 40 40 H 1.08992 * 109.59083 * 185.72211 * 17 16 5 41 41 H 1.09000 * 109.59016 * 65.43026 * 17 16 5 42 42 H 1.07998 * 119.83522 * 359.97438 * 22 21 19 43 43 H 1.08005 * 120.19542 * 359.97438 * 26 25 24 44 44 H 1.07992 * 119.44010 * 180.02562 * 27 26 25 45 45 H 1.07997 * 119.55402 * 180.02562 * 28 27 26 46 46 H 1.08006 * 120.25163 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0435 -0.7295 1.2453 5 6 3.5674 -0.8481 1.1700 6 1 4.0061 0.1472 1.0992 7 7 4.0652 -1.5160 2.3751 8 6 5.3497 -1.2990 2.7971 9 1 5.9960 -0.6358 2.2413 10 6 5.8212 -1.9314 3.9394 11 7 7.0560 -1.7232 4.3447 12 14 4.7036 -3.0790 4.9004 13 1 4.8458 -4.4614 4.3770 14 1 5.0828 -3.0517 6.3359 15 1 3.2940 -2.6361 4.7522 16 6 3.9600 -1.6643 -0.0642 17 6 3.4650 -0.9470 -1.3239 18 7 2.0224 -0.6995 -1.1945 19 6 1.1673 -1.1061 -2.1537 20 8 -0.0309 -0.9798 -1.9929 21 6 1.6867 -1.7058 -3.4015 22 6 2.7035 -1.0988 -4.1284 23 7 3.1527 -1.6552 -5.2448 24 7 2.6966 -2.7577 -5.7188 25 6 1.7200 -3.4350 -5.1117 26 6 1.2221 -4.6417 -5.6332 27 6 0.2245 -5.2967 -4.9784 28 6 -0.3148 -4.7912 -3.7968 29 6 0.1424 -3.6233 -3.2622 30 6 1.1702 -2.9269 -3.9060 31 1 -0.3634 -1.0263 -0.0541 32 1 -0.3633 0.4663 0.9158 33 1 -0.3634 0.5600 -0.8616 34 1 1.7661 -0.1669 2.1367 35 1 1.6025 -1.7251 1.2915 36 1 3.4849 -2.1118 2.8742 37 1 7.3856 -2.1654 5.1426 38 1 3.5036 -2.6522 -0.0048 39 1 5.0445 -1.7660 -0.1058 40 1 3.6516 -1.5717 -2.1973 41 1 3.9899 0.0019 -1.4344 42 1 3.1296 -0.1686 -3.7826 43 1 1.6281 -5.0465 -6.5485 44 1 -0.1556 -6.2237 -5.3814 45 1 -1.1054 -5.3320 -3.2980 46 1 -0.2827 -3.2413 -2.3457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044758007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:20 Heat of formation + Delta-G solvation = 81.129940 kcal Electronic energy + Delta-G solvation = -29756.451971 eV Core-core repulsion = 25840.776347 eV Total energy + Delta-G solvation = -3915.675624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93436 -40.41105 -38.22920 -37.68659 -34.86571 -34.47869 -32.52524 -32.08627 -31.98706 -30.69433 -29.89283 -27.43990 -26.15394 -24.80741 -24.43609 -23.43761 -22.84338 -21.78316 -20.42614 -19.66595 -18.97242 -18.59734 -17.71540 -17.23645 -16.20443 -16.15176 -15.71229 -15.47326 -15.10913 -14.91932 -14.75344 -14.38850 -14.21135 -14.04259 -13.79980 -13.46696 -13.07269 -12.83061 -12.75740 -12.63688 -12.48171 -12.34792 -12.20861 -12.01871 -11.70849 -11.20660 -11.12905 -11.07265 -10.99242 -10.97735 -10.62826 -10.44348 -10.30630 -10.01025 -9.75931 -9.66970 -9.27659 -9.02080 -8.77879 -8.68883 -7.37316 -5.84772 -3.21363 -0.57969 0.24672 1.24052 2.25342 2.43813 2.69430 3.31331 3.34378 3.39985 3.51758 3.59828 3.88956 3.93726 4.06730 4.37991 4.49723 4.51867 4.68776 4.75448 4.78076 4.84230 4.97186 5.06410 5.11804 5.19469 5.26257 5.37136 5.39526 5.46245 5.52017 5.59009 5.65778 5.71687 5.78032 5.82607 5.88790 5.93033 5.94842 6.10897 6.17421 6.22925 6.25974 6.29306 6.51299 6.66375 6.81304 7.15674 7.82306 7.89912 8.24528 8.34061 9.11668 9.84390 10.03535 11.33281 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.003064 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.540214 B = 9135.142869 C = 9378.739984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.080 0.920 4 C -0.139 4.139 5 C 0.184 3.816 6 H 0.058 0.942 7 N -0.747 5.747 8 C -0.247 4.247 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.884 3.116 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.277 1.277 16 C -0.150 4.150 17 C 0.099 3.901 18 N -0.589 5.589 19 C 0.563 3.437 20 O -0.520 6.520 21 C -0.097 4.097 22 C 0.045 3.955 23 N -0.220 5.220 24 N -0.192 5.192 25 C 0.062 3.938 26 C -0.077 4.077 27 C -0.097 4.097 28 C -0.090 4.090 29 C -0.097 4.097 30 C -0.029 4.029 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.179 0.821 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.795 -2.749 -18.476 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.045 3.955 3 H 0.098 0.902 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.377 4.377 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.579 5.579 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.191 4.191 17 C -0.024 4.024 18 N -0.321 5.321 19 C 0.349 3.651 20 O -0.397 6.397 21 C -0.113 4.113 22 C -0.108 4.108 23 N -0.072 5.072 24 N -0.046 5.046 25 C -0.067 4.067 26 C -0.098 4.098 27 C -0.117 4.117 28 C -0.109 4.109 29 C -0.116 4.116 30 C -0.038 4.038 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.196 0.804 43 H 0.164 0.836 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.124 -2.433 -19.499 24.797 hybrid contribution -1.412 -0.990 2.018 2.654 sum -16.536 -3.423 -17.481 24.305 Atomic orbital electron populations 1.22232 0.92561 1.03616 1.00995 1.21413 0.95615 0.95289 0.83164 0.90235 1.22350 0.97566 1.01040 0.96856 1.20144 0.90695 0.95455 0.86336 0.92373 1.42778 1.13118 1.55080 1.27903 1.19055 0.87433 1.23668 1.07526 0.89117 1.24674 0.96073 1.00036 0.98154 1.69698 1.15041 1.46999 1.26166 0.86570 0.80497 0.81558 0.79992 1.21126 1.21676 1.20330 1.22657 1.02412 0.99747 0.94329 1.22111 0.78966 1.01260 1.00102 1.48193 1.07866 1.56239 1.19821 1.17864 0.86254 0.78529 0.82418 1.90872 1.14708 1.55495 1.78656 1.21291 0.96834 0.95598 0.97541 1.24359 0.92942 1.01074 0.92381 1.73055 1.20760 1.03692 1.09677 1.73618 1.06354 1.00564 1.24089 1.20336 0.95941 0.97374 0.93037 1.20815 0.96239 0.92289 1.00478 1.21100 0.95626 1.00089 0.94889 1.21212 0.99138 0.95207 0.95374 1.21153 0.94988 0.94752 1.00680 1.18613 0.96472 0.93862 0.94865 0.91242 0.93420 0.91072 0.90193 0.91801 0.80621 0.92977 0.92302 0.89761 0.90543 0.90374 0.80428 0.83586 0.84356 0.84551 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 7.59 37.16 0.28 -1.36 16 2 C 0.15 1.81 3.49 -67.60 -0.24 1.57 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.14 -2.00 4.84 -26.62 -0.13 -2.12 16 5 C 0.18 3.16 2.73 -67.87 -0.19 2.97 16 6 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 7 N -0.75 -16.58 4.93 -53.36 -0.26 -16.84 16 8 C -0.25 -6.63 10.41 -15.06 -0.16 -6.79 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.54 13.97 55.49 0.78 -27.77 16 12 Si 0.88 21.55 27.74 -169.99 -4.71 16.84 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 16 C -0.15 -2.31 5.67 -26.59 -0.15 -2.46 16 17 C 0.10 1.17 5.36 -3.71 -0.02 1.15 16 18 N -0.59 -7.14 2.97 -166.32 -0.49 -7.64 16 19 C 0.56 7.12 6.68 -12.32 -0.08 7.04 16 20 O -0.52 -7.35 10.96 5.32 0.06 -7.29 16 21 C -0.10 -1.17 4.86 -104.31 -0.51 -1.67 16 22 C 0.04 0.50 8.88 -16.97 -0.15 0.35 16 23 N -0.22 -2.84 11.47 30.73 0.35 -2.49 16 24 N -0.19 -2.49 11.52 32.21 0.37 -2.12 16 25 C 0.06 0.73 6.69 -84.87 -0.57 0.16 16 26 C -0.08 -0.66 10.01 -39.46 -0.39 -1.06 16 27 C -0.10 -0.66 9.94 -39.92 -0.40 -1.05 16 28 C -0.09 -0.69 9.96 -39.84 -0.40 -1.09 16 29 C -0.10 -1.01 9.26 -39.66 -0.37 -1.38 16 30 C -0.03 -0.35 5.77 -106.50 -0.61 -0.96 16 31 H 0.07 0.92 6.80 -51.93 -0.35 0.57 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.90 6.69 -51.93 -0.35 0.55 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.36 8.01 5.66 -40.82 -0.23 7.78 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.08 0.86 5.14 -51.93 -0.27 0.59 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.18 1.56 7.41 -52.49 -0.39 1.17 16 43 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 44 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 45 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.15 1.59 6.45 -52.48 -0.34 1.25 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -32.40 365.71 -8.74 -41.13 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.17 Total: 7.27 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -4.17 Total: -6.61 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.74 Total: -56.86 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.06 Total: -7.29 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.40 -8.74 -41.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.265 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds