Wall clock time and date at job start Sat Apr 11 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.70244 * 2 1 4 4 C 1.53188 * 109.58691 * 120.36294 * 2 1 3 5 5 C 1.53037 * 109.31122 * 174.42211 * 4 2 1 6 6 H 1.09000 * 109.46544 * 58.65279 * 5 4 2 7 7 N 1.46504 * 109.46127 * 178.61170 * 5 4 2 8 8 C 1.36935 * 120.00061 * 204.99939 * 7 5 4 9 9 H 1.08002 * 119.99865 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00056 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99875 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99946 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47146 * 89.99919 * 12 10 8 14 14 H 1.48502 * 109.46892 * 209.99576 * 12 10 8 15 15 H 1.48498 * 109.47192 * 329.99499 * 12 10 8 16 16 C 1.53081 * 109.65686 * 298.69397 * 5 4 2 17 17 C 1.53186 * 109.29531 * 61.15696 * 16 5 4 18 18 N 1.46925 * 109.58191 * 239.64781 * 2 1 3 19 19 C 1.34781 * 120.63516 * 6.62746 * 18 2 1 20 20 O 1.21553 * 119.99679 * 354.82573 * 19 18 2 21 21 C 1.47868 * 120.00250 * 174.83183 * 19 18 2 22 22 C 1.38951 * 121.41891 * 310.96346 * 21 19 18 23 23 N 1.32577 * 120.33639 * 180.02562 * 22 21 19 24 24 N 1.28381 * 123.43568 * 359.97438 * 23 22 21 25 25 C 1.33464 * 121.85418 * 0.02562 * 24 23 22 26 26 C 1.40572 * 121.73962 * 179.97438 * 25 24 23 27 27 C 1.36118 * 119.61680 * 180.02562 * 26 25 24 28 28 C 1.39377 * 121.12209 * 0.02562 * 27 26 25 29 29 C 1.36338 * 120.88860 * 0.02562 * 28 27 26 30 30 C 1.39855 * 119.50196 * 359.72761 * 29 28 27 31 31 H 1.09004 * 109.47395 * 176.98196 * 1 2 3 32 32 H 1.09004 * 109.46956 * 296.98448 * 1 2 3 33 33 H 1.08998 * 109.47465 * 56.97967 * 1 2 3 34 34 H 1.09001 * 109.49158 * 294.36616 * 4 2 1 35 35 H 1.08992 * 109.50256 * 54.43070 * 4 2 1 36 36 H 0.97001 * 119.99762 * 24.99655 * 7 5 4 37 37 H 0.97001 * 119.99848 * 180.02562 * 11 10 8 38 38 H 1.08991 * 109.38674 * 301.27475 * 16 5 4 39 39 H 1.09003 * 109.61850 * 181.17423 * 16 5 4 40 40 H 1.08992 * 109.59083 * 185.72211 * 17 16 5 41 41 H 1.09000 * 109.59016 * 65.43026 * 17 16 5 42 42 H 1.07998 * 119.83522 * 359.97438 * 22 21 19 43 43 H 1.08005 * 120.19542 * 359.97438 * 26 25 24 44 44 H 1.07992 * 119.44010 * 180.02562 * 27 26 25 45 45 H 1.07997 * 119.55402 * 180.02562 * 28 27 26 46 46 H 1.08006 * 120.25163 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0435 -0.7295 1.2453 5 6 3.5674 -0.8481 1.1700 6 1 4.0061 0.1472 1.0992 7 7 4.0652 -1.5160 2.3751 8 6 5.3497 -1.2990 2.7971 9 1 5.9960 -0.6358 2.2413 10 6 5.8212 -1.9314 3.9394 11 7 7.0560 -1.7232 4.3447 12 14 4.7036 -3.0790 4.9004 13 1 4.8458 -4.4614 4.3770 14 1 5.0828 -3.0517 6.3359 15 1 3.2940 -2.6361 4.7522 16 6 3.9600 -1.6643 -0.0642 17 6 3.4650 -0.9470 -1.3239 18 7 2.0224 -0.6995 -1.1945 19 6 1.1673 -1.1061 -2.1537 20 8 -0.0309 -0.9798 -1.9929 21 6 1.6867 -1.7058 -3.4015 22 6 2.7035 -1.0988 -4.1284 23 7 3.1527 -1.6552 -5.2448 24 7 2.6966 -2.7577 -5.7188 25 6 1.7200 -3.4350 -5.1117 26 6 1.2221 -4.6417 -5.6332 27 6 0.2245 -5.2967 -4.9784 28 6 -0.3148 -4.7912 -3.7968 29 6 0.1424 -3.6233 -3.2622 30 6 1.1702 -2.9269 -3.9060 31 1 -0.3634 -1.0263 -0.0541 32 1 -0.3633 0.4663 0.9158 33 1 -0.3634 0.5600 -0.8616 34 1 1.7661 -0.1669 2.1367 35 1 1.6025 -1.7251 1.2915 36 1 3.4849 -2.1118 2.8742 37 1 7.3856 -2.1654 5.1426 38 1 3.5036 -2.6522 -0.0048 39 1 5.0445 -1.7660 -0.1058 40 1 3.6516 -1.5717 -2.1973 41 1 3.9899 0.0019 -1.4344 42 1 3.1296 -0.1686 -3.7826 43 1 1.6281 -5.0465 -6.5485 44 1 -0.1556 -6.2237 -5.3814 45 1 -1.1054 -5.3320 -3.2980 46 1 -0.2827 -3.2413 -2.3457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044758007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:19 Heat of formation + Delta-G solvation = 60.459759 kcal Electronic energy + Delta-G solvation = -29757.348297 eV Core-core repulsion = 25840.776347 eV Total energy + Delta-G solvation = -3916.571950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.78612 -41.39933 -39.03909 -38.82265 -36.37914 -35.41999 -33.92461 -33.46546 -32.75604 -31.73993 -31.25544 -28.62253 -27.02609 -25.95171 -25.54211 -24.37799 -24.24771 -22.81575 -21.78412 -20.72863 -19.81300 -19.57193 -19.38721 -18.18483 -17.22242 -17.00069 -16.76504 -16.60950 -16.17153 -16.09236 -15.88401 -15.58186 -15.25052 -15.12405 -14.89950 -14.68584 -14.60957 -14.09890 -13.84510 -13.51811 -13.47360 -13.40717 -13.21686 -13.02069 -12.92954 -12.82120 -12.64995 -12.13015 -12.10035 -12.06617 -11.94462 -11.85679 -11.78904 -11.44524 -11.22170 -10.96220 -10.49089 -10.25017 -9.77199 -9.49695 -9.32313 -8.02322 -5.35685 -1.39141 -0.51814 0.48903 1.31965 1.36941 1.39145 1.46728 1.59815 1.80274 2.47729 2.74131 2.80307 2.98951 3.14743 3.28502 3.29317 3.45524 3.67136 3.71954 3.76616 3.90938 3.98655 4.07263 4.13804 4.15566 4.26916 4.30829 4.44809 4.47051 4.53029 4.55878 4.66671 4.72727 4.80083 4.85826 4.92186 4.97745 4.99655 5.10582 5.17833 5.21063 5.28116 5.35814 5.41144 5.59985 5.64176 5.77780 6.15234 6.21772 6.84147 7.07638 7.38123 7.83893 8.01746 9.19022 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.003064 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.540214 B = 9135.142869 C = 9378.739984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.151 3.849 3 H 0.096 0.904 4 C -0.128 4.128 5 C 0.177 3.823 6 H 0.054 0.946 7 N -0.752 5.752 8 C -0.225 4.225 9 H 0.062 0.938 10 C -0.063 4.063 11 N -0.984 5.984 12 Si 0.950 3.050 13 H -0.283 1.283 14 H -0.298 1.298 15 H -0.251 1.251 16 C -0.142 4.142 17 C 0.109 3.891 18 N -0.588 5.588 19 C 0.569 3.431 20 O -0.535 6.535 21 C -0.112 4.112 22 C 0.047 3.953 23 N -0.245 5.245 24 N -0.210 5.210 25 C 0.046 3.954 26 C -0.085 4.085 27 C -0.083 4.083 28 C -0.071 4.071 29 C -0.126 4.126 30 C -0.042 4.042 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.363 0.637 37 H 0.257 0.743 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.199 0.801 43 H 0.166 0.834 44 H 0.180 0.820 45 H 0.168 0.832 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.520 -4.041 -19.587 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 H 0.114 0.886 4 C -0.167 4.167 5 C 0.069 3.931 6 H 0.072 0.928 7 N -0.394 5.394 8 C -0.356 4.356 9 H 0.080 0.920 10 C -0.255 4.255 11 N -0.634 5.634 12 Si 0.778 3.222 13 H -0.209 1.209 14 H -0.225 1.225 15 H -0.176 1.176 16 C -0.183 4.183 17 C -0.014 4.014 18 N -0.320 5.320 19 C 0.356 3.644 20 O -0.414 6.414 21 C -0.128 4.128 22 C -0.106 4.106 23 N -0.096 5.096 24 N -0.064 5.064 25 C -0.084 4.084 26 C -0.105 4.105 27 C -0.103 4.103 28 C -0.090 4.090 29 C -0.145 4.145 30 C -0.051 4.051 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.196 0.804 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.216 0.784 43 H 0.183 0.817 44 H 0.198 0.802 45 H 0.185 0.815 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.892 -3.706 -20.670 27.588 hybrid contribution -0.636 -0.639 2.247 2.421 sum -18.528 -4.346 -18.423 26.487 Atomic orbital electron populations 1.22098 0.92024 1.02790 1.01457 1.21426 0.95896 0.95706 0.82124 0.88601 1.22219 0.94915 1.01292 0.98260 1.20395 0.92715 0.94916 0.85070 0.92769 1.42821 1.11485 1.55551 1.29532 1.19030 0.88759 1.21459 1.06347 0.92018 1.25448 0.97576 1.02609 0.99847 1.69874 1.17359 1.49164 1.27037 0.85482 0.79798 0.79235 0.77691 1.20941 1.22491 1.17585 1.22444 1.01102 0.99446 0.95259 1.22021 0.78974 1.02045 0.98343 1.48161 1.07765 1.56206 1.19828 1.17893 0.85955 0.78004 0.82548 1.90863 1.15378 1.56038 1.79108 1.21271 0.97672 0.96285 0.97582 1.24600 0.92655 1.01506 0.91831 1.72983 1.21759 1.04266 1.10628 1.73509 1.07124 1.00928 1.24819 1.20714 0.95999 0.98470 0.93244 1.21187 0.96664 0.91318 1.01366 1.21567 0.94102 1.00851 0.93799 1.21672 0.98527 0.93752 0.95088 1.21184 0.95834 0.96355 1.01099 1.18856 0.96945 0.94080 0.95213 0.92590 0.92007 0.91600 0.89796 0.92170 0.80384 0.93455 0.93140 0.91803 0.89657 0.88286 0.78438 0.81655 0.80240 0.81482 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 7.59 71.98 0.55 -2.26 16 2 C 0.15 3.40 3.49 44.97 0.16 3.56 16 3 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.13 -3.45 4.84 30.67 0.15 -3.30 16 5 C 0.18 5.95 2.73 45.03 0.12 6.07 16 6 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 7 N -0.75 -32.91 4.93 -322.75 -1.59 -34.50 16 8 C -0.22 -12.24 10.41 84.03 0.87 -11.36 16 9 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 10 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 11 N -0.98 -62.01 13.97 21.65 0.30 -61.71 16 12 Si 0.95 44.63 27.74 68.60 1.90 46.53 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 15 H -0.25 -10.58 6.52 99.48 0.65 -9.93 16 16 C -0.14 -4.30 5.67 30.68 0.17 -4.12 16 17 C 0.11 2.45 5.36 86.36 0.46 2.91 16 18 N -0.59 -13.41 2.97 -798.39 -2.37 -15.78 16 19 C 0.57 13.87 6.68 86.79 0.58 14.45 16 20 O -0.54 -14.72 10.96 -3.88 -0.04 -14.76 16 21 C -0.11 -2.65 4.86 -19.66 -0.10 -2.75 16 22 C 0.05 1.03 8.88 84.75 0.75 1.78 16 23 N -0.24 -6.32 11.47 -56.68 -0.65 -6.97 16 24 N -0.21 -5.42 11.52 -52.00 -0.60 -6.02 16 25 C 0.05 1.03 6.69 40.38 0.27 1.30 16 26 C -0.08 -1.25 10.01 22.35 0.22 -1.02 16 27 C -0.08 -0.81 9.94 22.05 0.22 -0.59 16 28 C -0.07 -0.87 9.96 22.10 0.22 -0.65 16 29 C -0.13 -2.46 9.26 22.22 0.21 -2.26 16 30 C -0.04 -0.97 5.77 -21.08 -0.12 -1.09 16 31 H 0.06 1.40 6.80 -2.38 -0.02 1.39 16 32 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.07 1.56 6.69 -2.39 -0.02 1.54 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.36 15.55 5.66 -92.71 -0.52 15.02 16 37 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.09 1.83 5.14 -2.39 -0.01 1.82 16 41 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.20 3.25 7.41 -2.91 -0.02 3.23 16 43 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 44 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 45 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 46 H 0.13 2.87 6.45 -2.91 -0.02 2.85 16 Total: -1.00 -72.71 365.71 2.59 -70.12 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.43 Total: 25.62 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.21 Total: -2.52 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -4.91 Total: -124.99 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.04 Total: -14.76 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Total: -72.71 2.59 -70.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.576 kcal (2) G-P(sol) polarization free energy of solvation -72.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds