Wall clock time and date at job start Sat Apr 11 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.70618 * 2 1 4 4 C 1.53189 * 109.58744 * 239.64849 * 2 1 3 5 5 C 1.53041 * 109.31195 * 294.84549 * 4 2 1 6 6 H 1.08999 * 109.45950 * 58.64453 * 5 4 2 7 7 N 1.46504 * 109.46183 * 178.61302 * 5 4 2 8 8 C 1.36932 * 120.00244 * 205.00065 * 7 5 4 9 9 H 1.08000 * 120.00007 * 359.72556 * 8 7 5 10 10 C 1.38815 * 120.00352 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99665 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 119.99957 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47621 * 0.02562 * 12 10 8 14 14 H 1.48512 * 109.47204 * 120.00131 * 12 10 8 15 15 H 1.48500 * 109.47053 * 239.99838 * 12 10 8 16 16 C 1.53035 * 109.54056 * 298.63531 * 5 4 2 17 17 C 1.53188 * 109.31316 * 61.36302 * 16 5 4 18 18 N 1.46926 * 109.59001 * 120.35622 * 2 1 3 19 19 C 1.34774 * 120.63292 * 246.20071 * 18 2 1 20 20 O 1.21591 * 120.00311 * 354.19377 * 19 18 2 21 21 C 1.47511 * 119.99698 * 174.19522 * 19 18 2 22 22 C 1.38668 * 120.34143 * 306.15438 * 21 19 18 23 23 C 1.38991 * 120.63299 * 179.72106 * 22 21 19 24 24 C 1.36217 * 121.14059 * 0.56543 * 23 22 21 25 25 C 1.40695 * 120.16943 * 359.71491 * 24 23 22 26 26 N 1.33759 * 120.97872 * 179.97438 * 25 24 23 27 27 C 1.31331 * 119.73128 * 180.02562 * 26 25 24 28 28 C 1.39651 * 120.68544 * 0.02562 * 27 26 25 29 29 N 1.31447 * 120.63562 * 359.97438 * 28 27 26 30 30 C 1.33492 * 119.72683 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.46896 * 180.35253 * 1 2 3 32 32 H 1.09000 * 109.46650 * 300.35392 * 1 2 3 33 33 H 1.08994 * 109.47228 * 60.35358 * 1 2 3 34 34 H 1.08998 * 109.50250 * 174.89844 * 4 2 1 35 35 H 1.09000 * 109.50111 * 54.80081 * 4 2 1 36 36 H 0.97001 * 119.99718 * 24.99753 * 7 5 4 37 37 H 0.96994 * 120.00071 * 180.02562 * 11 10 8 38 38 H 1.09004 * 109.49952 * 181.31584 * 16 5 4 39 39 H 1.08999 * 109.49569 * 301.41135 * 16 5 4 40 40 H 1.09002 * 109.58609 * 185.58198 * 17 16 5 41 41 H 1.09000 * 109.70440 * 65.22179 * 17 16 5 42 42 H 1.07996 * 119.68342 * 359.97438 * 22 21 19 43 43 H 1.08000 * 119.43412 * 180.30194 * 23 22 21 44 44 H 1.08000 * 119.91797 * 179.70533 * 24 23 22 45 45 H 1.08004 * 119.65882 * 180.02562 * 27 26 25 46 46 H 1.07993 * 119.67619 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 1.6415 -2.2040 -1.1702 6 1 0.5566 -2.2814 -1.0992 7 7 2.1023 -2.8977 -2.3755 8 6 1.4650 -4.0338 -2.7976 9 1 0.6254 -4.4210 -2.2395 10 6 1.9014 -4.6908 -3.9400 11 7 2.9280 -4.2219 -4.6171 12 14 1.0315 -6.2401 -4.5161 13 1 -0.0840 -6.5558 -3.5880 14 1 0.4919 -6.0258 -5.8830 15 1 1.9946 -7.3703 -4.5357 16 6 2.2800 -2.8464 0.0633 17 6 1.7692 -2.1411 1.3236 18 7 2.0226 -0.6995 1.1944 19 6 2.6937 -0.0316 2.1535 20 8 2.9890 1.1362 1.9880 21 6 3.0701 -0.7175 3.4041 22 6 2.1089 -1.3682 4.1628 23 6 2.4577 -2.0212 5.3391 24 6 3.7450 -2.0311 5.7842 25 6 4.7522 -1.3788 5.0496 26 7 6.0214 -1.3779 5.4719 27 6 6.9419 -0.7608 4.7671 28 6 6.6097 -0.1043 3.5801 29 7 5.3691 -0.0922 3.1459 30 6 4.4167 -0.7128 3.8458 31 1 -0.3633 -1.0276 0.0063 32 1 -0.3632 0.5193 0.8868 33 1 -0.3633 0.5083 -0.8931 34 1 3.1297 -0.6503 -1.2914 35 1 1.6075 -0.2783 -2.1368 36 1 2.8589 -2.5521 -2.8746 37 1 3.2327 -4.6807 -5.4155 38 1 2.0123 -3.9023 0.1035 39 1 3.3639 -2.7474 0.0050 40 1 2.2945 -2.5276 2.1970 41 1 0.6989 -2.3155 1.4341 42 1 1.0801 -1.3711 3.8343 43 1 1.6942 -2.5260 5.9123 44 1 3.9932 -2.5407 6.7035 45 1 7.9664 -0.7611 5.1090 46 1 7.3796 0.3982 3.0136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044791802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:25 Heat of formation + Delta-G solvation = 53.034959 kcal Electronic energy + Delta-G solvation = -29653.491699 eV Core-core repulsion = 25736.597785 eV Total energy + Delta-G solvation = -3916.893914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77122 -40.16225 -37.87473 -37.28413 -34.97431 -34.53723 -32.69609 -31.82039 -31.16978 -30.71623 -29.26962 -27.29687 -25.77150 -24.64490 -24.40718 -23.66193 -22.96348 -21.56206 -20.44678 -19.26325 -18.65993 -18.04732 -17.21000 -17.04102 -16.76107 -15.82972 -15.42811 -15.31130 -14.99361 -14.91090 -14.35313 -14.30575 -14.03802 -13.77340 -13.53457 -13.44694 -12.95269 -12.82727 -12.61299 -12.48405 -12.18094 -12.14507 -11.91412 -11.86430 -11.76585 -11.58693 -11.27084 -10.94671 -10.87882 -10.75607 -10.45246 -10.17956 -9.95182 -9.74292 -9.62037 -9.31116 -9.27449 -8.94632 -8.81750 -8.47011 -6.98646 -5.78867 -3.08009 -0.23850 0.24098 1.47826 2.36583 2.74161 3.06592 3.40770 3.46054 3.48683 3.69974 3.72886 3.84374 3.96477 4.36310 4.41957 4.56008 4.61774 4.74321 4.90527 4.92804 5.04954 5.15674 5.25494 5.31451 5.34855 5.45224 5.47139 5.56362 5.61900 5.63273 5.75217 5.80869 5.83482 5.85231 5.91984 6.06596 6.17665 6.25554 6.29726 6.39704 6.47482 6.54232 6.65618 6.90364 6.98562 7.04905 7.44381 7.51883 7.67019 8.22596 8.39302 9.50528 10.08584 10.43170 11.43779 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.002967 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.366699 B = 9436.053201 C = 9883.888137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.096 0.904 4 C -0.133 4.133 5 C 0.180 3.820 6 H 0.051 0.949 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.071 0.929 10 C -0.013 4.013 11 N -0.931 5.931 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.150 4.150 17 C 0.103 3.897 18 N -0.595 5.595 19 C 0.567 3.433 20 O -0.522 6.522 21 C -0.083 4.083 22 C -0.065 4.065 23 C -0.102 4.102 24 C -0.067 4.067 25 C 0.074 3.926 26 N -0.425 5.425 27 C 0.077 3.923 28 C 0.080 3.920 29 N -0.407 5.407 30 C 0.110 3.890 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.177 0.823 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 7.080 22.221 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.114 0.886 4 C -0.172 4.172 5 C 0.070 3.930 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.089 0.911 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.191 4.191 17 C -0.020 4.020 18 N -0.328 5.328 19 C 0.354 3.646 20 O -0.399 6.399 21 C -0.088 4.088 22 C -0.086 4.086 23 C -0.122 4.122 24 C -0.086 4.086 25 C -0.050 4.050 26 N -0.139 5.139 27 C -0.099 4.099 28 C -0.095 4.095 29 N -0.120 5.120 30 C -0.015 4.015 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.194 0.806 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.025 7.496 22.078 23.339 hybrid contribution 0.093 -0.953 -0.549 1.104 sum 1.118 6.543 21.529 22.529 Atomic orbital electron populations 1.22149 0.94919 1.02797 1.01967 1.21207 0.93884 0.97185 0.83733 0.88556 1.22206 1.01479 0.97164 0.96362 1.20189 0.96719 0.89164 0.86966 0.93064 1.42449 1.37977 1.29329 1.26677 1.19267 1.10323 1.01034 1.06370 0.91140 1.24748 0.98483 0.99467 0.98241 1.69673 1.27580 1.41288 1.19431 0.86148 0.78648 0.83169 0.78395 1.20556 1.21879 1.21921 1.22666 1.01253 1.00411 0.94803 1.21953 1.00767 0.79341 0.99909 1.48141 1.54995 1.09483 1.20131 1.17850 0.77699 0.86314 0.82742 1.90780 1.53382 1.16396 1.79300 1.19830 0.91833 1.00024 0.97078 1.21525 0.99658 0.93454 0.93961 1.20935 0.96563 0.98728 0.95980 1.20950 0.91254 0.97040 0.99401 1.19503 0.92502 0.98925 0.94091 1.68696 0.99970 1.14700 1.30530 1.24097 1.00203 0.93126 0.92475 1.24204 0.94287 0.96136 0.94889 1.68774 1.00578 1.12780 1.29853 1.19238 0.93431 0.96218 0.92660 0.91589 0.92906 0.91193 0.91808 0.90501 0.78283 0.93551 0.90679 0.92331 0.90695 0.91292 0.83893 0.83855 0.83892 0.80622 0.80612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.02 37.16 0.34 -1.65 16 2 C 0.14 2.10 3.22 -67.60 -0.22 1.89 16 3 H 0.10 1.51 7.00 -51.93 -0.36 1.15 16 4 C -0.13 -2.26 5.02 -26.61 -0.13 -2.39 16 5 C 0.18 3.42 2.52 -67.89 -0.17 3.25 16 6 H 0.05 0.97 6.44 -51.93 -0.33 0.64 16 7 N -0.72 -17.76 5.12 -53.39 -0.27 -18.04 16 8 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 11 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 12 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 C -0.15 -2.57 5.66 -26.62 -0.15 -2.73 16 17 C 0.10 1.38 5.14 -3.71 -0.02 1.36 16 18 N -0.59 -8.65 2.68 -166.45 -0.45 -9.09 16 19 C 0.57 8.97 6.84 -12.48 -0.09 8.89 16 20 O -0.52 -9.95 16.17 5.29 0.09 -9.86 16 21 C -0.08 -1.12 4.64 -104.63 -0.49 -1.60 16 22 C -0.07 -0.63 7.75 -39.14 -0.30 -0.93 16 23 C -0.10 -0.78 9.93 -40.03 -0.40 -1.18 16 24 C -0.07 -0.61 9.97 -39.38 -0.39 -1.00 16 25 C 0.07 0.89 6.59 -84.82 -0.56 0.33 16 26 N -0.42 -4.79 10.46 -10.82 -0.11 -4.90 16 27 C 0.08 0.68 11.21 -17.24 -0.19 0.49 16 28 C 0.08 0.83 11.22 -17.19 -0.19 0.63 16 29 N -0.41 -5.96 9.66 -10.59 -0.10 -6.07 16 30 C 0.11 1.54 6.58 -84.53 -0.56 0.99 16 31 H 0.07 0.83 5.72 -51.93 -0.30 0.53 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 37 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 0.91 5.39 -51.93 -0.28 0.63 16 41 H 0.07 0.79 7.49 -51.93 -0.39 0.40 16 42 H 0.14 1.08 7.73 -52.49 -0.41 0.67 16 43 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.18 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -35.46 373.54 -9.45 -44.91 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.16 Total: 8.36 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -3.77 Total: -0.73 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -0.21 Total: -65.32 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.46 -9.45 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044791802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.940 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds