Wall clock time and date at job start Sat Apr 11 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.70618 * 2 1 4 4 C 1.53189 * 109.58744 * 239.64849 * 2 1 3 5 5 C 1.53041 * 109.31195 * 294.84549 * 4 2 1 6 6 H 1.08999 * 109.45950 * 58.64453 * 5 4 2 7 7 N 1.46504 * 109.46183 * 178.61302 * 5 4 2 8 8 C 1.36932 * 120.00244 * 205.00065 * 7 5 4 9 9 H 1.08000 * 120.00007 * 359.72556 * 8 7 5 10 10 C 1.38815 * 120.00352 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99665 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 119.99957 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47621 * 0.02562 * 12 10 8 14 14 H 1.48512 * 109.47204 * 120.00131 * 12 10 8 15 15 H 1.48500 * 109.47053 * 239.99838 * 12 10 8 16 16 C 1.53035 * 109.54056 * 298.63531 * 5 4 2 17 17 C 1.53188 * 109.31316 * 61.36302 * 16 5 4 18 18 N 1.46926 * 109.59001 * 120.35622 * 2 1 3 19 19 C 1.34774 * 120.63292 * 246.20071 * 18 2 1 20 20 O 1.21591 * 120.00311 * 354.19377 * 19 18 2 21 21 C 1.47511 * 119.99698 * 174.19522 * 19 18 2 22 22 C 1.38668 * 120.34143 * 306.15438 * 21 19 18 23 23 C 1.38991 * 120.63299 * 179.72106 * 22 21 19 24 24 C 1.36217 * 121.14059 * 0.56543 * 23 22 21 25 25 C 1.40695 * 120.16943 * 359.71491 * 24 23 22 26 26 N 1.33759 * 120.97872 * 179.97438 * 25 24 23 27 27 C 1.31331 * 119.73128 * 180.02562 * 26 25 24 28 28 C 1.39651 * 120.68544 * 0.02562 * 27 26 25 29 29 N 1.31447 * 120.63562 * 359.97438 * 28 27 26 30 30 C 1.33492 * 119.72683 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.46896 * 180.35253 * 1 2 3 32 32 H 1.09000 * 109.46650 * 300.35392 * 1 2 3 33 33 H 1.08994 * 109.47228 * 60.35358 * 1 2 3 34 34 H 1.08998 * 109.50250 * 174.89844 * 4 2 1 35 35 H 1.09000 * 109.50111 * 54.80081 * 4 2 1 36 36 H 0.97001 * 119.99718 * 24.99753 * 7 5 4 37 37 H 0.96994 * 120.00071 * 180.02562 * 11 10 8 38 38 H 1.09004 * 109.49952 * 181.31584 * 16 5 4 39 39 H 1.08999 * 109.49569 * 301.41135 * 16 5 4 40 40 H 1.09002 * 109.58609 * 185.58198 * 17 16 5 41 41 H 1.09000 * 109.70440 * 65.22179 * 17 16 5 42 42 H 1.07996 * 119.68342 * 359.97438 * 22 21 19 43 43 H 1.08000 * 119.43412 * 180.30194 * 23 22 21 44 44 H 1.08000 * 119.91797 * 179.70533 * 24 23 22 45 45 H 1.08004 * 119.65882 * 180.02562 * 27 26 25 46 46 H 1.07993 * 119.67619 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 1.6415 -2.2040 -1.1702 6 1 0.5566 -2.2814 -1.0992 7 7 2.1023 -2.8977 -2.3755 8 6 1.4650 -4.0338 -2.7976 9 1 0.6254 -4.4210 -2.2395 10 6 1.9014 -4.6908 -3.9400 11 7 2.9280 -4.2219 -4.6171 12 14 1.0315 -6.2401 -4.5161 13 1 -0.0840 -6.5558 -3.5880 14 1 0.4919 -6.0258 -5.8830 15 1 1.9946 -7.3703 -4.5357 16 6 2.2800 -2.8464 0.0633 17 6 1.7692 -2.1411 1.3236 18 7 2.0226 -0.6995 1.1944 19 6 2.6937 -0.0316 2.1535 20 8 2.9890 1.1362 1.9880 21 6 3.0701 -0.7175 3.4041 22 6 2.1089 -1.3682 4.1628 23 6 2.4577 -2.0212 5.3391 24 6 3.7450 -2.0311 5.7842 25 6 4.7522 -1.3788 5.0496 26 7 6.0214 -1.3779 5.4719 27 6 6.9419 -0.7608 4.7671 28 6 6.6097 -0.1043 3.5801 29 7 5.3691 -0.0922 3.1459 30 6 4.4167 -0.7128 3.8458 31 1 -0.3633 -1.0276 0.0063 32 1 -0.3632 0.5193 0.8868 33 1 -0.3633 0.5083 -0.8931 34 1 3.1297 -0.6503 -1.2914 35 1 1.6075 -0.2783 -2.1368 36 1 2.8589 -2.5521 -2.8746 37 1 3.2327 -4.6807 -5.4155 38 1 2.0123 -3.9023 0.1035 39 1 3.3639 -2.7474 0.0050 40 1 2.2945 -2.5276 2.1970 41 1 0.6989 -2.3155 1.4341 42 1 1.0801 -1.3711 3.8343 43 1 1.6942 -2.5260 5.9123 44 1 3.9932 -2.5407 6.7035 45 1 7.9664 -0.7611 5.1090 46 1 7.3796 0.3982 3.0136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044791802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:25 Heat of formation + Delta-G solvation = 28.451278 kcal Electronic energy + Delta-G solvation = -29654.557727 eV Core-core repulsion = 25736.597785 eV Total energy + Delta-G solvation = -3917.959942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.58784 -41.31890 -39.03981 -38.24525 -36.24755 -35.80662 -34.02247 -33.45372 -31.90223 -31.68048 -30.89147 -28.62445 -26.56673 -26.04413 -25.33078 -24.93732 -24.31520 -22.89909 -21.63185 -20.07450 -19.79419 -19.21097 -18.80930 -18.04823 -17.88278 -16.92062 -16.73107 -16.27495 -16.06682 -15.91766 -15.67134 -15.38027 -15.19718 -15.13020 -14.92197 -14.71105 -14.43305 -14.09100 -13.87162 -13.22704 -13.20879 -13.02299 -12.91251 -12.87839 -12.85178 -12.79854 -12.69971 -12.62070 -12.45019 -12.10641 -12.09440 -11.97540 -11.70352 -11.16641 -11.08196 -10.88624 -10.11920 -10.03936 -9.75418 -9.59930 -9.01013 -7.92537 -5.21770 -1.00197 -0.50305 0.63533 1.48680 1.49220 1.52640 1.59183 1.73367 2.00642 2.57273 2.93069 3.02467 3.11388 3.13194 3.40783 3.47106 3.74761 3.75978 3.84164 3.92265 3.96741 4.07358 4.10148 4.22816 4.26543 4.30637 4.34745 4.51549 4.52953 4.56835 4.65989 4.73522 4.79963 4.83214 4.98365 5.01688 5.03609 5.05167 5.14119 5.18374 5.26478 5.31822 5.52165 5.54168 5.59287 5.62838 6.20859 6.28527 6.34433 6.68360 7.06339 7.34315 8.09508 8.33023 9.31621 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.002967 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.366699 B = 9436.053201 C = 9883.888137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.178 3.822 6 H 0.064 0.936 7 N -0.739 5.739 8 C -0.232 4.232 9 H 0.083 0.917 10 C -0.080 4.080 11 N -0.974 5.974 12 Si 0.971 3.029 13 H -0.260 1.260 14 H -0.297 1.297 15 H -0.298 1.298 16 C -0.141 4.141 17 C 0.113 3.887 18 N -0.593 5.593 19 C 0.567 3.433 20 O -0.567 6.567 21 C -0.124 4.124 22 C -0.047 4.047 23 C -0.090 4.090 24 C -0.065 4.065 25 C 0.054 3.946 26 N -0.439 5.439 27 C 0.083 3.917 28 C 0.077 3.923 29 N -0.463 5.463 30 C 0.082 3.918 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.368 0.632 37 H 0.249 0.751 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.168 0.832 43 H 0.189 0.811 44 H 0.168 0.832 45 H 0.220 0.780 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 5.713 25.297 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.101 0.899 4 C -0.162 4.162 5 C 0.070 3.930 6 H 0.081 0.919 7 N -0.378 5.378 8 C -0.364 4.364 9 H 0.101 0.899 10 C -0.272 4.272 11 N -0.625 5.625 12 Si 0.801 3.199 13 H -0.184 1.184 14 H -0.224 1.224 15 H -0.225 1.225 16 C -0.182 4.182 17 C -0.009 4.009 18 N -0.325 5.325 19 C 0.356 3.644 20 O -0.447 6.447 21 C -0.128 4.128 22 C -0.068 4.068 23 C -0.109 4.109 24 C -0.084 4.084 25 C -0.070 4.070 26 N -0.153 5.153 27 C -0.093 4.093 28 C -0.098 4.098 29 N -0.177 5.177 30 C -0.043 4.043 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.199 0.801 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.186 0.814 43 H 0.207 0.793 44 H 0.185 0.815 45 H 0.236 0.764 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.949 6.118 25.217 25.966 hybrid contribution 0.785 -0.466 -1.421 1.689 sum -0.164 5.652 23.795 24.458 Atomic orbital electron populations 1.22081 0.92317 1.03395 1.03119 1.21116 0.95741 0.96041 0.82756 0.89934 1.22076 0.99896 0.96421 0.97848 1.20414 0.97246 0.89687 0.85698 0.91853 1.42709 1.37476 1.29302 1.28318 1.19699 1.09839 1.01056 1.05765 0.89875 1.25577 0.99680 1.02900 0.99027 1.69845 1.29695 1.42962 1.20024 0.85093 0.77852 0.79215 0.77748 1.18374 1.22447 1.22545 1.22464 0.99377 1.00422 0.95927 1.21978 1.02723 0.78033 0.98182 1.48187 1.54720 1.09889 1.19741 1.18293 0.76590 0.85884 0.83612 1.90736 1.54963 1.18467 1.80498 1.19781 0.92838 1.03044 0.97169 1.21921 0.99863 0.91308 0.93667 1.21400 0.96989 0.97481 0.95073 1.21369 0.91234 0.96073 0.99735 1.19876 0.93615 0.99507 0.93988 1.68775 1.00132 1.15438 1.30978 1.24749 1.01640 0.91449 0.91437 1.24794 0.93721 0.95682 0.95603 1.68723 1.02358 1.14807 1.31830 1.19513 0.93717 0.97267 0.93756 0.91100 0.91380 0.90514 0.94339 0.90736 0.80133 0.94267 0.91155 0.95166 0.88987 0.87944 0.81430 0.79337 0.81490 0.76360 0.78015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.02 71.98 0.65 -2.79 16 2 C 0.15 4.31 3.22 44.97 0.14 4.46 16 3 H 0.08 2.69 7.00 -2.39 -0.02 2.67 16 4 C -0.12 -4.31 5.02 30.67 0.15 -4.15 16 5 C 0.18 6.73 2.52 45.02 0.11 6.85 16 6 H 0.06 2.28 6.44 -2.39 -0.02 2.27 16 7 N -0.74 -36.95 5.12 -322.81 -1.65 -38.60 16 8 C -0.23 -12.48 9.93 84.04 0.83 -11.65 16 9 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 10 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 11 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 12 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 13 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 14 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 15 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 16 C -0.14 -4.78 5.66 30.67 0.17 -4.61 16 17 C 0.11 2.79 5.14 86.36 0.44 3.23 16 18 N -0.59 -16.93 2.68 -798.78 -2.14 -19.07 16 19 C 0.57 18.17 6.84 86.69 0.59 18.76 16 20 O -0.57 -22.61 16.17 -4.00 -0.06 -22.67 16 21 C -0.12 -3.26 4.64 -19.87 -0.09 -3.35 16 22 C -0.05 -0.77 7.75 22.55 0.17 -0.60 16 23 C -0.09 -1.00 9.93 21.98 0.22 -0.78 16 24 C -0.06 -0.99 9.97 22.40 0.22 -0.76 16 25 C 0.05 1.23 6.59 40.28 0.27 1.50 16 26 N -0.44 -9.33 10.46 -188.15 -1.97 -11.30 16 27 C 0.08 1.37 11.21 85.11 0.95 2.32 16 28 C 0.08 1.60 11.22 85.09 0.95 2.56 16 29 N -0.46 -14.17 9.66 -187.42 -1.81 -15.98 16 30 C 0.08 2.32 6.58 40.58 0.27 2.59 16 31 H 0.07 1.55 5.72 -2.39 -0.01 1.53 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.37 20.42 7.80 -92.71 -0.72 19.69 16 37 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 2.02 5.39 -2.39 -0.01 2.00 16 41 H 0.10 1.91 7.49 -2.39 -0.02 1.89 16 42 H 0.17 1.79 7.73 -2.91 -0.02 1.77 16 43 H 0.19 0.40 8.06 -2.91 -0.02 0.38 16 44 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 46 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -82.28 373.54 1.51 -80.78 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.30 Total: 29.69 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.54 Total: 9.49 kcal Atomic # 7 Polarization: -137.48 SS G_CDS: -7.29 Total: -144.77 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.06 Total: -22.67 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -82.28 1.51 -80.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044791802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.228 kcal (2) G-P(sol) polarization free energy of solvation -82.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds