Wall clock time and date at job start Sat Apr 11 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.59144 * 2 1 4 4 C 1.53198 * 109.58329 * 120.28744 * 2 1 3 5 5 C 1.53044 * 109.31107 * 174.56337 * 4 2 1 6 6 H 1.09003 * 109.45631 * 58.63727 * 5 4 2 7 7 N 1.46497 * 109.46071 * 178.61169 * 5 4 2 8 8 C 1.36935 * 120.00168 * 205.02435 * 7 5 4 9 9 H 1.07997 * 119.99921 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00015 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99868 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99833 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46825 * 90.00310 * 12 10 8 14 14 H 1.48497 * 109.47339 * 330.00939 * 12 10 8 15 15 H 1.48498 * 109.47384 * 210.00236 * 12 10 8 16 16 C 1.53039 * 109.52314 * 298.62681 * 5 4 2 17 17 C 1.53188 * 109.31600 * 61.38838 * 16 5 4 18 18 N 1.46921 * 109.70070 * 239.64357 * 2 1 3 19 19 C 1.34780 * 120.63415 * 6.55599 * 18 2 1 20 20 O 1.21594 * 119.99498 * 5.63551 * 19 18 2 21 21 C 1.47511 * 120.00128 * 185.63088 * 19 18 2 22 22 C 1.38669 * 120.33989 * 34.75190 * 21 19 18 23 23 C 1.38989 * 120.63242 * 179.97438 * 22 21 19 24 24 C 1.36215 * 121.14045 * 0.02801 * 23 22 21 25 25 C 1.40687 * 120.17165 * 359.97438 * 24 23 22 26 26 N 1.33760 * 120.97733 * 180.02562 * 25 24 23 27 27 C 1.31327 * 119.73410 * 179.97438 * 26 25 24 28 28 C 1.39646 * 120.68018 * 359.97438 * 27 26 25 29 29 N 1.31448 * 120.64303 * 0.02562 * 28 27 26 30 30 C 1.33495 * 119.72386 * 359.69148 * 29 28 27 31 31 H 1.09000 * 109.47119 * 292.68095 * 1 2 3 32 32 H 1.09000 * 109.47062 * 52.67261 * 1 2 3 33 33 H 1.08990 * 109.47502 * 172.67697 * 1 2 3 34 34 H 1.08995 * 109.49640 * 54.60874 * 4 2 1 35 35 H 1.09007 * 109.49249 * 294.51169 * 4 2 1 36 36 H 0.97000 * 119.99569 * 25.02693 * 7 5 4 37 37 H 0.96999 * 119.99954 * 359.97438 * 11 10 8 38 38 H 1.09000 * 109.49214 * 181.32648 * 16 5 4 39 39 H 1.09003 * 109.49872 * 301.41505 * 16 5 4 40 40 H 1.08999 * 109.58525 * 185.56680 * 17 16 5 41 41 H 1.08994 * 109.71622 * 65.19702 * 17 16 5 42 42 H 1.07997 * 119.68684 * 359.97438 * 22 21 19 43 43 H 1.08007 * 119.43007 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.91416 * 180.02562 * 24 23 22 45 45 H 1.08000 * 119.65877 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.67881 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7279 1.2464 5 6 3.5678 -0.8435 1.1729 6 1 4.0045 0.1527 1.1020 7 7 4.0654 -1.5098 2.3790 8 6 5.3488 -1.2897 2.8028 9 1 5.9940 -0.6246 2.2482 10 6 5.8201 -1.9206 3.9460 11 7 5.0335 -2.7308 4.6222 12 14 7.5710 -1.6209 4.5236 13 1 7.5941 -0.4633 5.4536 14 1 8.4362 -1.3317 3.3519 15 1 8.0747 -2.8292 5.2247 16 6 3.9599 -1.6611 -0.0599 17 6 3.4685 -0.9437 -1.3210 18 7 2.0253 -0.6990 -1.1936 19 6 1.1721 -1.1078 -2.1536 20 8 -0.0050 -0.8103 -2.0876 21 6 1.6664 -1.9161 -3.2842 22 6 2.6858 -2.8368 -3.0943 23 6 3.1558 -3.6019 -4.1552 24 6 2.6318 -3.4697 -5.4055 25 6 1.5962 -2.5478 -5.6443 26 7 1.0695 -2.4052 -6.8656 27 6 0.1032 -1.5376 -7.0609 28 6 -0.3816 -0.7615 -6.0061 29 7 0.1207 -0.8847 -4.7976 30 6 1.0998 -1.7643 -4.5743 31 1 -0.3633 0.3963 0.9482 32 1 -0.3633 0.6231 -0.8172 33 1 -0.3634 -1.0192 -0.1310 34 1 1.6048 -1.7247 1.2921 35 1 1.7638 -0.1655 2.1372 36 1 3.4857 -2.1069 2.8774 37 1 4.1244 -2.8867 4.3220 38 1 5.0444 -1.7631 -0.0988 39 1 3.5031 -2.6491 -0.0016 40 1 3.6575 -1.5685 -2.1939 41 1 3.9917 0.0061 -1.4312 42 1 3.1187 -2.9605 -2.1126 43 1 3.9503 -4.3135 -3.9852 44 1 3.0118 -4.0747 -6.2155 45 1 -0.3214 -1.4237 -8.0474 46 1 -1.1771 -0.0532 -6.1848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044791806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:31 Heat of formation + Delta-G solvation = 82.761233 kcal Electronic energy + Delta-G solvation = -29677.928068 eV Core-core repulsion = 25762.323182 eV Total energy + Delta-G solvation = -3915.604886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85344 -40.39876 -37.76241 -37.40063 -35.05394 -34.75791 -33.11329 -32.09178 -31.20418 -30.58791 -29.09044 -27.10689 -25.73776 -24.68917 -24.35100 -23.58186 -22.97662 -21.60837 -20.37642 -19.62304 -18.95642 -18.09938 -17.31655 -17.19713 -16.50004 -16.04538 -15.66793 -15.33518 -15.07448 -14.90239 -14.53758 -14.28212 -14.08262 -13.80319 -13.66153 -13.49411 -13.37408 -12.93521 -12.42816 -12.31054 -12.18881 -12.08732 -11.94628 -11.87464 -11.80955 -11.55861 -11.35309 -10.86197 -10.83098 -10.60484 -10.45814 -10.12527 -10.04711 -9.54237 -9.31322 -9.23754 -9.00442 -8.94950 -8.79167 -8.42149 -7.09364 -6.14342 -3.15014 -0.30073 0.20209 1.39911 2.31106 2.87603 3.01498 3.48390 3.52856 3.66402 3.66815 3.72354 3.80767 3.92551 4.33909 4.40180 4.58704 4.61635 4.71920 4.85011 4.90202 4.97923 5.08188 5.14141 5.24198 5.36331 5.42699 5.43346 5.50072 5.58626 5.61351 5.76026 5.78319 5.82206 5.84457 5.95341 6.05590 6.10941 6.23269 6.25146 6.36292 6.36756 6.46444 6.67077 6.80277 6.92481 6.95142 7.40999 7.50068 7.76261 8.25807 8.71263 9.17664 10.04189 10.19259 11.33930 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.002775 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.242936 B =10087.089734 C =11170.316789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.151 3.849 3 H 0.071 0.929 4 C -0.136 4.136 5 C 0.185 3.815 6 H 0.049 0.951 7 N -0.735 5.735 8 C -0.332 4.332 9 H 0.065 0.935 10 C -0.045 4.045 11 N -0.944 5.944 12 Si 1.081 2.919 13 H -0.295 1.295 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.151 4.151 17 C 0.081 3.919 18 N -0.599 5.599 19 C 0.560 3.440 20 O -0.505 6.505 21 C -0.095 4.095 22 C -0.070 4.070 23 C -0.104 4.104 24 C -0.064 4.064 25 C 0.071 3.929 26 N -0.425 5.425 27 C 0.073 3.927 28 C 0.076 3.924 29 N -0.398 5.398 30 C 0.113 3.887 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.367 0.633 37 H 0.256 0.744 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.158 0.842 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.175 0.825 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 1.903 -23.397 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.048 3.952 3 H 0.089 0.911 4 C -0.175 4.175 5 C 0.075 3.925 6 H 0.067 0.933 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.589 5.589 12 Si 0.912 3.088 13 H -0.223 1.223 14 H -0.221 1.221 15 H -0.214 1.214 16 C -0.192 4.192 17 C -0.042 4.042 18 N -0.333 5.333 19 C 0.347 3.653 20 O -0.381 6.381 21 C -0.100 4.100 22 C -0.090 4.090 23 C -0.124 4.124 24 C -0.083 4.083 25 C -0.053 4.053 26 N -0.139 5.139 27 C -0.102 4.102 28 C -0.099 4.099 29 N -0.112 5.112 30 C -0.012 4.012 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.200 0.800 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.175 0.825 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.192 0.808 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.989 1.745 -22.101 23.245 hybrid contribution -1.171 0.183 -1.154 1.654 sum -8.160 1.928 -23.254 24.720 Atomic orbital electron populations 1.22176 0.92751 1.03628 1.00723 1.21277 0.95459 0.95100 0.83352 0.91089 1.22328 0.97528 1.00944 0.96721 1.20081 0.90781 0.95009 0.86647 0.93271 1.42445 1.13178 1.54723 1.27307 1.20049 0.89673 1.26284 1.10258 0.91721 1.25762 1.06250 0.97589 0.94629 1.70849 1.08256 1.38303 1.41472 0.83212 0.74215 0.75957 0.75374 1.22318 1.22149 1.21406 1.22679 1.01891 0.99813 0.94846 1.22500 0.79770 1.01532 1.00371 1.48074 1.07360 1.57720 1.20101 1.17856 0.86017 0.79955 0.81483 1.90849 1.16338 1.55308 1.75580 1.19970 0.97548 0.99674 0.92765 1.22010 0.93036 0.92891 1.01096 1.21030 1.00276 0.99132 0.91974 1.20982 0.93546 0.95874 0.97930 1.19514 0.98016 0.98014 0.89806 1.68690 1.08177 1.16182 1.20829 1.24082 0.93084 0.91911 1.01143 1.24211 0.98899 0.98146 0.88677 1.68853 1.06026 1.14724 1.21565 1.19235 0.94202 0.94325 0.93455 0.93682 0.90718 0.91725 0.91883 0.90597 0.80015 0.93307 0.90362 0.92261 0.88759 0.91400 0.82487 0.83657 0.83846 0.80753 0.80765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.61 37.16 0.28 -1.72 16 2 C 0.15 2.23 3.49 -67.60 -0.24 1.99 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.24 4.84 -26.61 -0.13 -2.36 16 5 C 0.19 3.47 2.73 -67.89 -0.19 3.28 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 N -0.74 -17.59 5.12 -53.38 -0.27 -17.86 16 8 C -0.33 -8.95 9.93 -15.06 -0.15 -9.10 16 9 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 10 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 11 N -0.94 -28.68 13.70 55.49 0.76 -27.92 16 12 Si 1.08 25.38 29.92 -169.99 -5.09 20.29 16 13 H -0.30 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 C -0.15 -2.40 5.34 -26.61 -0.14 -2.54 16 17 C 0.08 1.05 5.53 -3.71 -0.02 1.03 16 18 N -0.60 -8.61 2.97 -166.45 -0.49 -9.11 16 19 C 0.56 8.60 7.07 -12.48 -0.09 8.51 16 20 O -0.50 -8.89 11.53 5.28 0.06 -8.83 16 21 C -0.09 -1.27 5.45 -104.63 -0.57 -1.84 16 22 C -0.07 -0.75 7.37 -39.14 -0.29 -1.03 16 23 C -0.10 -0.88 9.93 -40.03 -0.40 -1.28 16 24 C -0.06 -0.59 9.97 -39.39 -0.39 -0.98 16 25 C 0.07 0.82 6.59 -84.82 -0.56 0.26 16 26 N -0.42 -4.54 10.46 -10.82 -0.11 -4.65 16 27 C 0.07 0.59 11.21 -17.24 -0.19 0.40 16 28 C 0.08 0.70 11.22 -17.19 -0.19 0.51 16 29 N -0.40 -5.40 9.11 -10.59 -0.10 -5.50 16 30 C 0.11 1.52 6.57 -84.53 -0.56 0.97 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.17 6.69 -51.93 -0.35 0.82 16 33 H 0.06 1.05 6.82 -51.93 -0.35 0.69 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 36 H 0.37 9.20 6.63 -40.82 -0.27 8.93 16 37 H 0.26 7.65 6.77 -40.82 -0.28 7.38 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 0.96 7.64 -51.93 -0.40 0.56 16 40 H 0.09 1.04 3.56 -51.93 -0.19 0.86 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.16 1.61 5.11 -52.49 -0.27 1.34 16 43 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 44 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.18 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -34.90 364.67 -9.61 -44.52 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.95 Total: 8.82 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -3.91 Total: -5.25 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.22 Total: -65.04 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.06 Total: -8.83 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.09 Total: 20.29 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.90 -9.61 -44.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044791806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.278 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds