Wall clock time and date at job start Sat Apr 11 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.59144 * 2 1 4 4 C 1.53198 * 109.58329 * 120.28744 * 2 1 3 5 5 C 1.53044 * 109.31107 * 174.56337 * 4 2 1 6 6 H 1.09003 * 109.45631 * 58.63727 * 5 4 2 7 7 N 1.46497 * 109.46071 * 178.61169 * 5 4 2 8 8 C 1.36935 * 120.00168 * 205.02435 * 7 5 4 9 9 H 1.07997 * 119.99921 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00015 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99868 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99833 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46825 * 90.00310 * 12 10 8 14 14 H 1.48497 * 109.47339 * 330.00939 * 12 10 8 15 15 H 1.48498 * 109.47384 * 210.00236 * 12 10 8 16 16 C 1.53039 * 109.52314 * 298.62681 * 5 4 2 17 17 C 1.53188 * 109.31600 * 61.38838 * 16 5 4 18 18 N 1.46921 * 109.70070 * 239.64357 * 2 1 3 19 19 C 1.34780 * 120.63415 * 6.55599 * 18 2 1 20 20 O 1.21594 * 119.99498 * 5.63551 * 19 18 2 21 21 C 1.47511 * 120.00128 * 185.63088 * 19 18 2 22 22 C 1.38669 * 120.33989 * 34.75190 * 21 19 18 23 23 C 1.38989 * 120.63242 * 179.97438 * 22 21 19 24 24 C 1.36215 * 121.14045 * 0.02801 * 23 22 21 25 25 C 1.40687 * 120.17165 * 359.97438 * 24 23 22 26 26 N 1.33760 * 120.97733 * 180.02562 * 25 24 23 27 27 C 1.31327 * 119.73410 * 179.97438 * 26 25 24 28 28 C 1.39646 * 120.68018 * 359.97438 * 27 26 25 29 29 N 1.31448 * 120.64303 * 0.02562 * 28 27 26 30 30 C 1.33495 * 119.72386 * 359.69148 * 29 28 27 31 31 H 1.09000 * 109.47119 * 292.68095 * 1 2 3 32 32 H 1.09000 * 109.47062 * 52.67261 * 1 2 3 33 33 H 1.08990 * 109.47502 * 172.67697 * 1 2 3 34 34 H 1.08995 * 109.49640 * 54.60874 * 4 2 1 35 35 H 1.09007 * 109.49249 * 294.51169 * 4 2 1 36 36 H 0.97000 * 119.99569 * 25.02693 * 7 5 4 37 37 H 0.96999 * 119.99954 * 359.97438 * 11 10 8 38 38 H 1.09000 * 109.49214 * 181.32648 * 16 5 4 39 39 H 1.09003 * 109.49872 * 301.41505 * 16 5 4 40 40 H 1.08999 * 109.58525 * 185.56680 * 17 16 5 41 41 H 1.08994 * 109.71622 * 65.19702 * 17 16 5 42 42 H 1.07997 * 119.68684 * 359.97438 * 22 21 19 43 43 H 1.08007 * 119.43007 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.91416 * 180.02562 * 24 23 22 45 45 H 1.08000 * 119.65877 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.67881 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7279 1.2464 5 6 3.5678 -0.8435 1.1729 6 1 4.0045 0.1527 1.1020 7 7 4.0654 -1.5098 2.3790 8 6 5.3488 -1.2897 2.8028 9 1 5.9940 -0.6246 2.2482 10 6 5.8201 -1.9206 3.9460 11 7 5.0335 -2.7308 4.6222 12 14 7.5710 -1.6209 4.5236 13 1 7.5941 -0.4633 5.4536 14 1 8.4362 -1.3317 3.3519 15 1 8.0747 -2.8292 5.2247 16 6 3.9599 -1.6611 -0.0599 17 6 3.4685 -0.9437 -1.3210 18 7 2.0253 -0.6990 -1.1936 19 6 1.1721 -1.1078 -2.1536 20 8 -0.0050 -0.8103 -2.0876 21 6 1.6664 -1.9161 -3.2842 22 6 2.6858 -2.8368 -3.0943 23 6 3.1558 -3.6019 -4.1552 24 6 2.6318 -3.4697 -5.4055 25 6 1.5962 -2.5478 -5.6443 26 7 1.0695 -2.4052 -6.8656 27 6 0.1032 -1.5376 -7.0609 28 6 -0.3816 -0.7615 -6.0061 29 7 0.1207 -0.8847 -4.7976 30 6 1.0998 -1.7643 -4.5743 31 1 -0.3633 0.3963 0.9482 32 1 -0.3633 0.6231 -0.8172 33 1 -0.3634 -1.0192 -0.1310 34 1 1.6048 -1.7247 1.2921 35 1 1.7638 -0.1655 2.1372 36 1 3.4857 -2.1069 2.8774 37 1 4.1244 -2.8867 4.3220 38 1 5.0444 -1.7631 -0.0988 39 1 3.5031 -2.6491 -0.0016 40 1 3.6575 -1.5685 -2.1939 41 1 3.9917 0.0061 -1.4312 42 1 3.1187 -2.9605 -2.1126 43 1 3.9503 -4.3135 -3.9852 44 1 3.0118 -4.0747 -6.2155 45 1 -0.3214 -1.4237 -8.0474 46 1 -1.1771 -0.0532 -6.1848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044791806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:30 Heat of formation + Delta-G solvation = 59.447184 kcal Electronic energy + Delta-G solvation = -29678.939041 eV Core-core repulsion = 25762.323182 eV Total energy + Delta-G solvation = -3916.615859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.67084 -41.49763 -38.86311 -38.45876 -36.46676 -35.83637 -34.28956 -33.77746 -31.94021 -31.54359 -30.72028 -28.48511 -26.53235 -25.91891 -25.41695 -25.00231 -24.25813 -22.80124 -21.74827 -20.55562 -19.89769 -19.35554 -18.93394 -18.01376 -17.52937 -17.16961 -16.85193 -16.39251 -16.19473 -16.08617 -15.73219 -15.43695 -15.29095 -15.07620 -14.91632 -14.77325 -14.64543 -14.18438 -13.57971 -13.36734 -13.23493 -13.09750 -12.97985 -12.86708 -12.76778 -12.67173 -12.63615 -12.55897 -12.36526 -12.10158 -11.89815 -11.84604 -11.62213 -11.19056 -10.89760 -10.46418 -10.04173 -9.96179 -9.77333 -9.55122 -9.10721 -8.35606 -5.30239 -1.06868 -0.52824 0.57358 1.55417 1.60398 1.70413 1.78824 1.84230 1.98558 2.72926 2.93299 3.00115 3.09538 3.12109 3.42545 3.46890 3.57124 3.68258 3.75415 3.89854 3.91215 3.98440 4.02849 4.15144 4.21611 4.23637 4.33032 4.45885 4.50502 4.54083 4.56295 4.66459 4.72683 4.76380 4.90218 4.93053 4.95932 5.06451 5.08876 5.15721 5.21428 5.32364 5.41184 5.54947 5.62024 5.63730 6.21426 6.34361 6.52098 6.70212 7.11184 7.11412 8.01304 8.14049 9.16260 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.002775 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.242936 B =10087.089734 C =11170.316789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.154 3.846 3 H 0.081 0.919 4 C -0.123 4.123 5 C 0.179 3.821 6 H 0.044 0.956 7 N -0.748 5.748 8 C -0.322 4.322 9 H 0.070 0.930 10 C -0.107 4.107 11 N -0.979 5.979 12 Si 1.127 2.873 13 H -0.289 1.289 14 H -0.269 1.269 15 H -0.296 1.296 16 C -0.138 4.138 17 C 0.090 3.910 18 N -0.600 5.600 19 C 0.557 3.443 20 O -0.536 6.536 21 C -0.126 4.126 22 C -0.063 4.063 23 C -0.099 4.099 24 C -0.057 4.057 25 C 0.052 3.948 26 N -0.441 5.441 27 C 0.085 3.915 28 C 0.080 3.920 29 N -0.448 5.448 30 C 0.089 3.911 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.357 0.643 37 H 0.244 0.756 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.119 0.881 41 H 0.078 0.922 42 H 0.159 0.841 43 H 0.181 0.819 44 H 0.169 0.831 45 H 0.221 0.779 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 2.051 -26.264 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 H 0.099 0.901 4 C -0.162 4.162 5 C 0.071 3.929 6 H 0.062 0.938 7 N -0.389 5.389 8 C -0.454 4.454 9 H 0.088 0.912 10 C -0.298 4.298 11 N -0.628 5.628 12 Si 0.953 3.047 13 H -0.216 1.216 14 H -0.194 1.194 15 H -0.223 1.223 16 C -0.178 4.178 17 C -0.032 4.032 18 N -0.333 5.333 19 C 0.346 3.654 20 O -0.414 6.414 21 C -0.131 4.131 22 C -0.083 4.083 23 C -0.118 4.118 24 C -0.076 4.076 25 C -0.071 4.071 26 N -0.155 5.155 27 C -0.091 4.091 28 C -0.095 4.095 29 N -0.162 5.162 30 C -0.035 4.035 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.189 0.811 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.096 0.904 42 H 0.177 0.823 43 H 0.198 0.802 44 H 0.186 0.814 45 H 0.237 0.763 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.067 1.911 -25.016 25.812 hybrid contribution -1.595 0.192 -0.443 1.667 sum -7.662 2.103 -25.459 26.670 Atomic orbital electron populations 1.21999 0.92622 1.02339 1.00965 1.21208 0.95454 0.95345 0.82859 0.90096 1.22163 0.95877 1.00617 0.97538 1.20313 0.91992 0.94621 0.85977 0.93796 1.42656 1.12347 1.54999 1.28940 1.20375 0.90688 1.24765 1.09535 0.91246 1.27121 1.09377 0.97762 0.95502 1.70963 1.08208 1.40744 1.42877 0.82617 0.70675 0.75566 0.75855 1.21570 1.19437 1.22298 1.22427 1.01376 0.99334 0.94696 1.22497 0.78905 1.02159 0.99643 1.48108 1.07843 1.57567 1.19832 1.18235 0.85664 0.79627 0.81865 1.90817 1.17571 1.56563 1.76410 1.19887 0.99598 1.01279 0.92322 1.22102 0.92078 0.92288 1.01858 1.21355 1.00604 0.98935 0.90928 1.21345 0.92364 0.94980 0.98907 1.19809 0.98897 0.98524 0.89829 1.68779 1.09217 1.17203 1.20264 1.24817 0.91647 0.90052 1.02620 1.24889 0.98710 0.98128 0.87786 1.68816 1.07346 1.16170 1.23868 1.19404 0.94877 0.95263 0.93962 0.92431 0.91588 0.93521 0.92781 0.91116 0.81106 0.94597 0.91028 0.92660 0.86332 0.90399 0.82331 0.80175 0.81384 0.76253 0.77549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.66 7.61 71.98 0.55 -3.11 16 2 C 0.15 4.56 3.49 44.98 0.16 4.72 16 3 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.12 -4.08 4.84 30.68 0.15 -3.93 16 5 C 0.18 6.72 2.73 45.02 0.12 6.84 16 6 H 0.04 1.70 8.08 -2.39 -0.02 1.68 16 7 N -0.75 -36.30 5.12 -322.81 -1.65 -37.95 16 8 C -0.32 -17.39 9.93 84.03 0.83 -16.55 16 9 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 10 C -0.11 -6.06 5.50 84.86 0.47 -5.59 16 11 N -0.98 -60.75 13.70 21.65 0.30 -60.46 16 12 Si 1.13 50.91 29.92 68.60 2.05 52.96 16 13 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 15 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 16 C -0.14 -4.27 5.34 30.67 0.16 -4.11 16 17 C 0.09 2.23 5.53 86.36 0.48 2.71 16 18 N -0.60 -17.13 2.97 -798.77 -2.37 -19.50 16 19 C 0.56 17.34 7.07 86.69 0.61 17.95 16 20 O -0.54 -19.47 11.53 -4.01 -0.05 -19.51 16 21 C -0.13 -3.35 5.45 -19.87 -0.11 -3.46 16 22 C -0.06 -1.26 7.37 22.55 0.17 -1.09 16 23 C -0.10 -1.40 9.93 21.98 0.22 -1.18 16 24 C -0.06 -0.90 9.97 22.40 0.22 -0.68 16 25 C 0.05 1.15 6.59 40.28 0.27 1.41 16 26 N -0.44 -8.45 10.46 -188.16 -1.97 -10.42 16 27 C 0.08 1.13 11.21 85.11 0.95 2.09 16 28 C 0.08 1.35 11.22 85.09 0.95 2.30 16 29 N -0.45 -12.06 9.11 -187.41 -1.71 -13.76 16 30 C 0.09 2.37 6.57 40.58 0.27 2.64 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 2.11 6.69 -2.39 -0.02 2.09 16 33 H 0.05 1.56 6.82 -2.39 -0.02 1.54 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.36 18.50 6.63 -92.71 -0.61 17.89 16 37 H 0.24 15.09 6.77 -92.71 -0.63 14.46 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 1.76 7.64 -2.39 -0.02 1.75 16 40 H 0.12 2.43 3.56 -2.39 -0.01 2.42 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.16 3.01 5.11 -2.91 -0.01 3.00 16 43 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 45 H 0.22 0.70 8.06 -2.91 -0.02 0.68 16 46 H 0.21 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -78.45 364.67 1.62 -76.83 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.55 Total: 30.87 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 6.47 Total: 0.94 kcal Atomic # 7 Polarization: -134.68 SS G_CDS: -7.40 Total: -142.09 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.51 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -78.45 1.62 -76.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044791806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.275 kcal (2) G-P(sol) polarization free energy of solvation -78.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds