Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.58642 * 2 1 4 4 C 1.53188 * 109.58679 * 120.28560 * 2 1 3 5 5 C 1.53040 * 109.31416 * 174.56766 * 4 2 1 6 6 H 1.09000 * 109.46561 * 58.65220 * 5 4 2 7 7 N 1.46498 * 109.46215 * 178.62801 * 5 4 2 8 8 C 1.36940 * 120.00143 * 204.99894 * 7 5 4 9 9 H 1.07998 * 120.00111 * 359.97438 * 8 7 5 10 10 C 1.38816 * 120.00065 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99914 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 120.00001 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47091 * 90.00308 * 12 10 8 14 14 H 1.48502 * 109.47204 * 210.00102 * 12 10 8 15 15 H 1.48502 * 109.47143 * 330.00058 * 12 10 8 16 16 C 1.53044 * 109.53585 * 298.63049 * 5 4 2 17 17 C 1.53195 * 109.31029 * 61.36542 * 16 5 4 18 18 N 1.46923 * 108.77602 * 305.36474 * 17 16 5 19 19 C 1.34777 * 120.63303 * 233.59009 * 18 17 16 20 20 O 1.21544 * 120.00105 * 186.28080 * 19 18 17 21 21 C 1.47860 * 119.99660 * 6.27294 * 19 18 17 22 22 C 1.40625 * 119.75879 * 33.69848 * 21 19 18 23 23 C 1.35729 * 120.83998 * 179.97438 * 22 21 19 24 24 C 1.40710 * 120.07893 * 359.97438 * 23 22 21 25 25 N 1.33798 * 120.85553 * 180.02562 * 24 23 22 26 26 C 1.31324 * 119.76244 * 179.97438 * 25 24 23 27 27 C 1.39754 * 120.71279 * 0.02562 * 26 25 24 28 28 N 1.31284 * 120.67153 * 359.97438 * 27 26 25 29 29 C 1.33822 * 119.73669 * 359.94987 * 28 27 26 30 30 C 1.38414 * 119.75756 * 213.42065 * 21 19 18 31 31 H 1.09003 * 109.46914 * 292.56461 * 1 2 3 32 32 H 1.08995 * 109.47060 * 52.56261 * 1 2 3 33 33 H 1.08996 * 109.46870 * 172.56063 * 1 2 3 34 34 H 1.09003 * 109.49457 * 294.51433 * 4 2 1 35 35 H 1.08997 * 109.50244 * 54.57945 * 4 2 1 36 36 H 0.97005 * 119.99842 * 24.99130 * 7 5 4 37 37 H 0.96998 * 120.00108 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.50056 * 181.31704 * 16 5 4 39 39 H 1.08997 * 109.49653 * 301.41670 * 16 5 4 40 40 H 1.09002 * 109.58399 * 65.15470 * 17 16 5 41 41 H 1.09004 * 109.58536 * 185.43603 * 17 16 5 42 42 H 1.08001 * 119.57293 * 359.96696 * 22 21 19 43 43 H 1.07999 * 119.95575 * 180.02562 * 23 22 21 44 44 H 1.07997 * 119.64508 * 179.97438 * 26 25 24 45 45 H 1.07995 * 119.66647 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.24837 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5678 -0.8433 1.1729 6 1 4.0046 0.1528 1.1022 7 7 4.0654 -1.5099 2.3788 8 6 5.3490 -1.2902 2.8024 9 1 5.9946 -0.6259 2.2473 10 6 5.8203 -1.9214 3.9454 11 7 7.0542 -1.7107 4.3523 12 14 4.7035 -3.0699 4.9060 13 1 4.8479 -4.4525 4.3836 14 1 5.0812 -3.0414 6.3419 15 1 3.2933 -2.6290 4.7563 16 6 3.9604 -1.6608 -0.0599 17 6 3.4685 -0.9436 -1.3211 18 7 2.0254 -0.6991 -1.1936 19 6 1.1722 -1.1078 -2.1535 20 8 -0.0023 -0.8009 -2.0936 21 6 1.6651 -1.9296 -3.2796 22 6 2.7068 -2.8504 -3.0682 23 6 3.1758 -3.6161 -4.0860 24 6 2.6199 -3.4959 -5.3731 25 7 3.0699 -4.2433 -6.3875 26 6 2.5351 -4.1140 -7.5799 27 6 1.4994 -3.2024 -7.8026 28 7 1.0405 -2.4578 -6.8235 29 6 1.5682 -2.5724 -5.5991 30 6 1.0940 -1.7910 -4.5328 31 1 -0.3633 0.3944 0.9490 32 1 -0.3633 0.6247 -0.8159 33 1 -0.3633 -1.0190 -0.1331 34 1 1.7638 -0.1654 2.1371 35 1 1.6045 -1.7244 1.2924 36 1 3.4856 -2.1068 2.8773 37 1 7.3835 -2.1514 5.1511 38 1 5.0449 -1.7626 -0.0988 39 1 3.5037 -2.6488 -0.0018 40 1 3.9921 0.0064 -1.4288 41 1 3.6599 -1.5673 -2.1943 42 1 3.1390 -2.9493 -2.0835 43 1 3.9760 -4.3190 -3.9076 44 1 2.9001 -4.7179 -8.3974 45 1 1.0722 -3.1096 -8.7901 46 1 0.2908 -1.0862 -4.6897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044851548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = 82.693689 kcal Electronic energy + Delta-G solvation = -29295.054705 eV Core-core repulsion = 25379.446890 eV Total energy + Delta-G solvation = -3915.607815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86065 -40.70239 -37.90440 -37.37508 -35.18605 -34.76486 -33.16509 -32.03186 -31.04051 -30.93535 -29.85229 -27.33476 -26.12825 -24.96892 -24.29981 -23.06808 -22.73607 -21.84549 -20.53637 -20.00600 -18.92034 -18.14003 -17.60996 -17.30005 -16.47127 -16.22572 -15.48367 -15.44207 -15.21349 -14.81914 -14.64760 -14.33070 -14.15238 -14.06729 -13.65554 -13.62042 -13.21683 -12.73949 -12.57936 -12.45862 -12.33014 -12.16657 -12.08137 -12.05749 -11.94880 -11.82817 -11.40503 -11.07988 -10.98167 -10.90071 -10.57445 -10.35304 -9.99009 -9.65793 -9.53859 -9.39308 -9.18953 -9.00479 -8.94111 -8.57675 -7.35459 -5.83493 -3.19842 -0.28570 0.03440 1.46834 2.02855 2.76850 2.92049 3.33002 3.36222 3.41619 3.60091 3.62475 3.71743 3.84651 4.18187 4.40495 4.51371 4.53359 4.63351 4.76773 4.90128 4.90902 4.97044 5.06160 5.16933 5.32130 5.35024 5.44939 5.46919 5.49453 5.60126 5.68625 5.72875 5.74104 5.83731 5.85648 5.96041 5.99218 6.16625 6.17992 6.25616 6.30258 6.36280 6.58674 6.71724 6.83065 6.85359 7.29188 7.34004 7.91576 8.03785 8.35438 9.13354 9.86113 10.05473 11.34567 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.002787 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.014282 B =10045.583676 C =11300.778779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.148 3.852 3 H 0.076 0.924 4 C -0.139 4.139 5 C 0.184 3.816 6 H 0.058 0.942 7 N -0.747 5.747 8 C -0.246 4.246 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.932 5.932 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.154 4.154 17 C 0.079 3.921 18 N -0.593 5.593 19 C 0.558 3.442 20 O -0.527 6.527 21 C -0.106 4.106 22 C -0.083 4.083 23 C -0.087 4.087 24 C 0.092 3.908 25 N -0.426 5.426 26 C 0.082 3.918 27 C 0.072 3.928 28 N -0.418 5.418 29 C 0.070 3.930 30 C -0.022 4.022 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.159 0.841 43 H 0.148 0.852 44 H 0.177 0.823 45 H 0.177 0.823 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 -1.900 -23.238 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 H 0.094 0.906 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.376 4.376 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.195 4.195 17 C -0.044 4.044 18 N -0.326 5.326 19 C 0.346 3.654 20 O -0.406 6.406 21 C -0.111 4.111 22 C -0.103 4.103 23 C -0.106 4.106 24 C -0.032 4.032 25 N -0.140 5.140 26 C -0.094 4.094 27 C -0.104 4.104 28 N -0.132 5.132 29 C -0.054 4.054 30 C -0.043 4.043 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.176 0.824 43 H 0.166 0.834 44 H 0.194 0.806 45 H 0.194 0.806 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.624 -1.561 -22.873 25.705 hybrid contribution -0.442 -1.030 0.674 1.307 sum -12.066 -2.591 -22.200 25.399 Atomic orbital electron populations 1.22188 0.92739 1.03657 1.00892 1.21328 0.95470 0.95352 0.83286 0.90642 1.22356 0.97531 1.01059 0.96887 1.20122 0.90737 0.95421 0.86276 0.92435 1.42791 1.13207 1.55019 1.27899 1.19052 0.87508 1.23526 1.07468 0.89154 1.24677 0.96087 1.00085 0.98156 1.69697 1.15129 1.47063 1.26081 0.86566 0.80525 0.81542 0.79965 1.21112 1.21746 1.20307 1.22690 1.02438 0.99733 0.94632 1.22579 0.79320 1.01896 1.00561 1.48106 1.07606 1.56901 1.19963 1.18130 0.85769 0.79708 0.81810 1.90841 1.16746 1.56695 1.76291 1.20129 0.97713 0.98855 0.94439 1.21518 0.94120 0.93601 1.01026 1.20755 1.00583 0.99623 0.89676 1.19691 0.94758 0.94096 0.94635 1.68746 1.25246 1.20374 0.99617 1.24157 0.93421 0.96458 0.95371 1.24102 0.94570 0.92347 0.99355 1.68677 1.24803 1.20638 0.99079 1.19420 0.95740 0.97442 0.92767 1.21118 0.97400 0.96575 0.89190 0.93466 0.90750 0.91681 0.90330 0.91797 0.80609 0.93003 0.89764 0.92122 0.90902 0.88322 0.82408 0.83413 0.80643 0.80638 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.62 37.16 0.28 -1.51 16 2 C 0.15 1.94 3.49 -67.60 -0.24 1.70 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -2.05 4.84 -26.61 -0.13 -2.18 16 5 C 0.18 3.17 2.73 -67.89 -0.19 2.98 16 6 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 7 N -0.75 -16.47 4.92 -53.38 -0.26 -16.73 16 8 C -0.25 -6.55 10.41 -15.06 -0.16 -6.71 16 9 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 10 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 11 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 12 Si 0.88 21.51 27.73 -169.99 -4.71 16.79 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 15 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 16 C -0.15 -2.24 5.31 -26.61 -0.14 -2.38 16 17 C 0.08 0.92 5.51 -3.71 -0.02 0.90 16 18 N -0.59 -7.50 2.97 -166.32 -0.49 -8.00 16 19 C 0.56 7.41 7.19 -12.32 -0.09 7.32 16 20 O -0.53 -8.12 12.35 5.33 0.07 -8.05 16 21 C -0.11 -1.23 5.44 -104.99 -0.57 -1.80 16 22 C -0.08 -0.85 7.28 -39.58 -0.29 -1.13 16 23 C -0.09 -0.87 9.95 -39.55 -0.39 -1.27 16 24 C 0.09 1.02 6.59 -84.72 -0.56 0.46 16 25 N -0.43 -4.33 10.46 -10.74 -0.11 -4.44 16 26 C 0.08 0.56 11.21 -17.20 -0.19 0.37 16 27 C 0.07 0.50 11.22 -17.22 -0.19 0.31 16 28 N -0.42 -4.37 10.46 -10.81 -0.11 -4.49 16 29 C 0.07 0.80 6.58 -84.82 -0.56 0.24 16 30 C -0.02 -0.26 9.56 -38.69 -0.37 -0.63 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.02 6.68 -51.93 -0.35 0.68 16 33 H 0.06 0.94 6.83 -51.93 -0.35 0.58 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.36 7.97 5.66 -40.82 -0.23 7.74 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 0.88 7.58 -51.93 -0.39 0.49 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.99 3.54 -51.93 -0.18 0.81 16 42 H 0.16 1.52 4.94 -52.49 -0.26 1.26 16 43 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.18 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.18 0.50 8.06 -52.49 -0.42 0.07 16 46 H 0.15 1.71 7.95 -52.49 -0.42 1.29 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -33.36 364.67 -9.26 -42.62 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.00 Total: 7.74 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -3.89 Total: -3.26 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.21 Total: -61.34 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.07 Total: -8.05 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.36 -9.26 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044851548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.316 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds