Wall clock time and date at job start Sat Apr 11 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.58714 * 2 1 4 4 C 1.53193 * 109.58813 * 239.71654 * 2 1 3 5 5 C 1.53044 * 109.34158 * 185.56335 * 4 2 1 6 6 H 1.09003 * 109.45301 * 301.35838 * 5 4 2 7 7 N 1.46500 * 109.45960 * 181.40185 * 5 4 2 8 8 C 1.36933 * 119.99702 * 154.99819 * 7 5 4 9 9 H 1.07999 * 120.00660 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99916 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99721 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00223 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47071 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47388 * 120.00143 * 12 10 8 15 15 H 1.48502 * 109.47202 * 240.00004 * 12 10 8 16 16 C 1.53104 * 109.50257 * 61.34251 * 5 4 2 17 17 C 1.53191 * 109.33400 * 298.65837 * 16 5 4 18 18 N 1.46927 * 108.77402 * 54.63705 * 17 16 5 19 19 C 1.34775 * 120.63026 * 126.41186 * 18 17 16 20 20 O 1.21557 * 119.99814 * 186.17446 * 19 18 17 21 21 C 1.47856 * 120.00044 * 6.17748 * 19 18 17 22 22 C 1.40621 * 119.76012 * 29.03923 * 21 19 18 23 23 C 1.35727 * 120.84273 * 179.97438 * 22 21 19 24 24 C 1.40714 * 120.07602 * 359.97438 * 23 22 21 25 25 N 1.33801 * 120.85433 * 180.02562 * 24 23 22 26 26 C 1.31332 * 119.76101 * 179.97438 * 25 24 23 27 27 C 1.39755 * 120.70894 * 359.97438 * 26 25 24 28 28 N 1.31272 * 120.67721 * 359.97438 * 27 26 25 29 29 C 1.33831 * 119.73718 * 0.04482 * 28 27 26 30 30 C 1.38418 * 119.75677 * 208.76767 * 21 19 18 31 31 H 1.08996 * 109.47405 * 183.20205 * 1 2 3 32 32 H 1.09006 * 109.47291 * 303.20635 * 1 2 3 33 33 H 1.09000 * 109.47422 * 63.20162 * 1 2 3 34 34 H 1.08998 * 109.49366 * 305.53120 * 4 2 1 35 35 H 1.08999 * 109.49743 * 65.59487 * 4 2 1 36 36 H 0.96996 * 119.99955 * 334.99665 * 7 5 4 37 37 H 0.96999 * 119.99615 * 179.97438 * 11 10 8 38 38 H 1.09006 * 109.48692 * 178.69884 * 16 5 4 39 39 H 1.09003 * 109.48851 * 58.61959 * 16 5 4 40 40 H 1.09002 * 109.58720 * 294.85027 * 17 16 5 41 41 H 1.08999 * 109.58533 * 174.42274 * 17 16 5 42 42 H 1.08006 * 119.57737 * 0.02562 * 22 21 19 43 43 H 1.07996 * 119.96170 * 180.02562 * 23 22 21 44 44 H 1.07999 * 119.64393 * 180.02562 * 26 25 24 45 45 H 1.08005 * 119.66156 * 180.02562 * 27 26 25 46 46 H 1.08002 * 120.24979 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8465 -1.1720 6 1 4.0061 0.1488 -1.1000 7 7 4.0646 -1.5125 -2.3785 8 6 5.3488 -1.2948 -2.8009 9 1 5.9955 -0.6325 -2.2444 10 6 5.8200 -1.9262 -3.9438 11 7 5.0322 -2.7338 -4.6217 12 14 7.5721 -1.6299 -4.5196 13 1 8.2457 -0.6872 -3.5906 14 1 8.3109 -2.9178 -4.5404 15 1 7.5525 -1.0484 -5.8859 16 6 3.9569 -1.6657 0.0614 17 6 3.4650 -0.9485 1.3226 18 7 2.0225 -0.7010 1.1936 19 6 1.1674 -1.1088 2.1523 20 8 -0.0314 -0.9995 1.9838 21 6 1.6876 -1.6891 3.4088 22 6 2.9469 -1.2919 3.8922 23 6 3.4454 -1.8100 5.0434 24 6 2.7011 -2.7570 5.7709 25 7 3.1773 -3.2775 6.9079 26 6 2.4642 -4.1596 7.5699 27 6 1.2109 -4.5615 7.1002 28 7 0.7216 -4.0647 5.9880 29 6 1.4293 -3.1647 5.2951 30 6 0.9290 -2.6153 4.1035 31 1 -0.3634 -1.0260 0.0574 32 1 -0.3634 0.5628 0.8599 33 1 -0.3634 0.4633 -0.9173 34 1 1.6029 -1.7236 -1.2935 35 1 1.7655 -0.1644 -2.1371 36 1 3.4840 -2.1076 -2.8781 37 1 5.3614 -3.1747 -5.4205 38 1 5.0412 -1.7697 0.1015 39 1 3.4983 -2.6528 0.0020 40 1 3.9903 0.0003 1.4317 41 1 3.6518 -1.5744 2.1952 42 1 3.5245 -0.5646 3.3409 43 1 4.4140 -1.4945 5.4019 44 1 2.8502 -4.5781 8.4876 45 1 0.6386 -5.2878 7.6584 46 1 -0.0398 -2.9141 3.7312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044851550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:41 Heat of formation + Delta-G solvation = 58.247636 kcal Electronic energy + Delta-G solvation = -29169.064175 eV Core-core repulsion = 25252.396300 eV Total energy + Delta-G solvation = -3916.667875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.58763 -41.66287 -38.95788 -38.25924 -36.25368 -35.84376 -34.23092 -33.68969 -31.78983 -31.74917 -30.94114 -28.45992 -26.85473 -26.10386 -25.65390 -24.39168 -23.89375 -22.79474 -21.84971 -20.90785 -19.83672 -19.17650 -18.80525 -18.08367 -17.21243 -17.01413 -16.72960 -16.57896 -16.05473 -15.98002 -15.56631 -15.47247 -15.37790 -15.27531 -14.84971 -14.64614 -14.44283 -14.01660 -13.60686 -13.53755 -13.26005 -13.13974 -13.01712 -12.90238 -12.88634 -12.82411 -12.74509 -12.60919 -12.29192 -12.10183 -12.02802 -11.93938 -11.65957 -11.35115 -10.89033 -10.31823 -10.17236 -10.00099 -9.77319 -9.59217 -8.99562 -7.92431 -5.21144 -1.00874 -0.64324 0.71744 1.27602 1.49044 1.49319 1.59208 1.75656 2.09671 2.57467 2.91252 2.95497 3.08702 3.17885 3.32634 3.41466 3.71641 3.74693 3.76871 3.91858 3.96108 4.03151 4.08565 4.13424 4.25148 4.33040 4.42160 4.54427 4.61944 4.64608 4.69026 4.71463 4.76214 4.84942 4.86221 4.99074 5.02527 5.06701 5.13993 5.16448 5.27386 5.42538 5.49213 5.51226 5.55631 5.68039 6.19171 6.29012 6.33291 6.65392 7.02758 7.35091 8.10979 8.33568 9.31621 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.002676 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.523975 B =10459.152077 C =11698.760790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.153 3.847 3 H 0.097 0.903 4 C -0.125 4.125 5 C 0.173 3.827 6 H 0.056 0.944 7 N -0.739 5.739 8 C -0.230 4.230 9 H 0.083 0.917 10 C -0.081 4.081 11 N -0.974 5.974 12 Si 0.970 3.030 13 H -0.261 1.261 14 H -0.298 1.298 15 H -0.298 1.298 16 C -0.142 4.142 17 C 0.092 3.908 18 N -0.593 5.593 19 C 0.556 3.444 20 O -0.556 6.556 21 C -0.116 4.116 22 C -0.084 4.084 23 C -0.083 4.083 24 C 0.075 3.925 25 N -0.449 5.449 26 C 0.095 3.905 27 C 0.084 3.916 28 N -0.453 5.453 29 C 0.049 3.951 30 C -0.034 4.034 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.369 0.631 37 H 0.248 0.752 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.178 0.822 43 H 0.170 0.830 44 H 0.223 0.777 45 H 0.219 0.781 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 1.913 27.331 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 H 0.115 0.885 4 C -0.164 4.164 5 C 0.065 3.935 6 H 0.074 0.926 7 N -0.378 5.378 8 C -0.362 4.362 9 H 0.101 0.899 10 C -0.273 4.273 11 N -0.625 5.625 12 Si 0.800 3.200 13 H -0.185 1.185 14 H -0.225 1.225 15 H -0.225 1.225 16 C -0.183 4.183 17 C -0.030 4.030 18 N -0.325 5.325 19 C 0.345 3.655 20 O -0.436 6.436 21 C -0.121 4.121 22 C -0.103 4.103 23 C -0.102 4.102 24 C -0.048 4.048 25 N -0.163 5.163 26 C -0.081 4.081 27 C -0.093 4.093 28 N -0.167 5.167 29 C -0.073 4.073 30 C -0.054 4.054 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.200 0.800 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.195 0.805 43 H 0.187 0.813 44 H 0.239 0.761 45 H 0.235 0.765 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.588 2.258 26.986 27.651 hybrid contribution 0.425 -0.727 -1.224 1.486 sum -5.163 1.531 25.763 26.320 Atomic orbital electron populations 1.22077 0.92804 1.02385 1.01052 1.21333 0.95392 0.95680 0.82615 0.88521 1.22171 0.96005 1.00363 0.97866 1.20449 0.92105 0.94987 0.85961 0.92605 1.42692 1.12185 1.54647 1.28240 1.19687 0.89992 1.20797 1.05716 0.89949 1.25568 1.02012 1.00630 0.99073 1.69840 1.37160 1.35535 1.19981 0.85108 0.80170 0.77004 0.77722 1.18455 1.22539 1.22523 1.22502 1.01269 0.99050 0.95504 1.22711 0.78753 1.02405 0.99114 1.48109 1.08149 1.56458 1.19744 1.18436 0.85802 0.77781 0.83468 1.90841 1.16247 1.56501 1.80047 1.20009 0.96526 0.99568 0.95986 1.21689 0.93226 0.99895 0.95488 1.21001 1.01070 0.94755 0.93364 1.19922 0.93034 0.97860 0.93965 1.68823 1.33722 1.08702 1.05063 1.24985 0.91639 0.91242 1.00234 1.24920 0.95168 0.97578 0.91641 1.68693 1.33731 1.07107 1.07219 1.19475 0.93564 0.97512 0.96775 1.21105 0.99197 0.93510 0.91593 0.93266 0.91622 0.92503 0.93610 0.90919 0.80011 0.94278 0.91069 0.94328 0.87687 0.86684 0.80481 0.81275 0.76102 0.76492 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 7.59 71.98 0.55 -2.93 16 2 C 0.15 4.05 3.49 44.97 0.16 4.20 16 3 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -4.04 4.84 30.67 0.15 -3.89 16 5 C 0.17 6.28 2.73 45.04 0.12 6.40 16 6 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 7 N -0.74 -35.98 5.12 -322.70 -1.65 -37.63 16 8 C -0.23 -12.22 9.93 84.04 0.83 -11.39 16 9 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 10 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 11 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 12 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 13 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 14 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 15 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 16 C -0.14 -4.45 5.66 30.69 0.17 -4.27 16 17 C 0.09 1.99 4.67 86.36 0.40 2.39 16 18 N -0.59 -14.96 2.97 -798.39 -2.37 -17.33 16 19 C 0.56 15.25 7.36 86.79 0.64 15.89 16 20 O -0.56 -18.25 12.04 -3.89 -0.05 -18.30 16 21 C -0.12 -2.72 5.47 -20.11 -0.11 -2.83 16 22 C -0.08 -1.45 7.29 22.27 0.16 -1.29 16 23 C -0.08 -1.41 9.95 22.29 0.22 -1.19 16 24 C 0.07 1.56 6.59 40.32 0.27 1.82 16 25 N -0.45 -7.97 10.46 -187.88 -1.96 -9.93 16 26 C 0.10 1.00 11.21 85.13 0.95 1.96 16 27 C 0.08 0.98 11.21 85.14 0.95 1.94 16 28 N -0.45 -9.58 10.46 -188.12 -1.97 -11.55 16 29 C 0.05 1.15 6.58 40.25 0.27 1.41 16 30 C -0.03 -0.85 9.55 22.85 0.22 -0.63 16 31 H 0.05 1.58 6.75 -2.39 -0.02 1.56 16 32 H 0.06 1.86 6.75 -2.38 -0.02 1.84 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.37 19.93 7.80 -92.71 -0.72 19.21 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.11 1.70 7.98 -2.39 -0.02 1.68 16 41 H 0.12 2.11 4.10 -2.39 -0.01 2.10 16 42 H 0.18 2.19 5.31 -2.91 -0.02 2.17 16 43 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.22 0.11 8.06 -2.91 -0.02 0.08 16 45 H 0.22 0.49 8.06 -2.91 -0.02 0.47 16 46 H 0.14 3.67 7.87 -2.91 -0.02 3.65 16 Total: -1.00 -75.39 368.44 1.03 -74.36 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.30 Total: 28.90 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.43 Total: 3.50 kcal Atomic # 7 Polarization: -128.05 SS G_CDS: -7.68 Total: -135.73 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.05 Total: -18.30 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.39 1.03 -74.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044851550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.610 kcal (2) G-P(sol) polarization free energy of solvation -75.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds