Wall clock time and date at job start Sat Apr 11 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88880 * 2 1 4 4 C 1.54912 * 111.00796 * 123.88215 * 2 1 3 5 5 N 1.47424 * 104.83319 * 155.08170 * 4 2 1 6 6 C 1.34776 * 125.64837 * 155.90740 * 5 4 2 7 7 O 1.21629 * 119.99908 * 0.02562 * 6 5 4 8 8 C 1.47311 * 119.99917 * 180.02562 * 6 5 4 9 9 C 1.36450 * 126.18778 * 180.02562 * 8 6 5 10 10 N 1.36132 * 106.76553 * 179.97438 * 9 8 6 11 11 C 1.40213 * 126.22207 * 179.97438 * 10 9 8 12 12 C 1.38831 * 120.06120 * 359.72648 * 11 10 9 13 13 C 1.38117 * 119.93098 * 179.72041 * 12 11 10 14 14 C 1.38276 * 120.06611 * 0.57412 * 13 12 11 15 15 C 1.38273 * 120.13263 * 359.68236 * 14 13 12 16 16 C 1.38128 * 120.06411 * 0.03790 * 15 14 13 17 17 C 1.36115 * 107.56210 * 359.97438 * 10 9 8 18 18 N 1.30154 * 109.00839 * 359.72433 * 17 10 9 19 19 C 1.47023 * 108.70235 * 335.87439 * 5 4 2 20 20 C 1.54320 * 107.27576 * 1.05739 * 19 5 4 21 21 H 1.08990 * 110.72081 * 263.83328 * 20 19 5 22 22 N 1.46496 * 110.72131 * 140.55218 * 20 19 5 23 23 C 1.36937 * 120.00105 * 91.48188 * 22 20 19 24 24 H 1.08011 * 119.99816 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00719 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99432 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00509 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47210 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47025 * 119.99988 * 27 25 23 30 30 H 1.48498 * 109.47634 * 240.00154 * 27 25 23 31 31 H 1.09002 * 109.47153 * 297.56874 * 1 2 3 32 32 H 1.09001 * 109.46832 * 177.57065 * 1 2 3 33 33 H 1.09004 * 109.47261 * 57.57047 * 1 2 3 34 34 H 1.08992 * 110.36777 * 273.92592 * 4 2 1 35 35 H 1.09005 * 110.36251 * 36.13876 * 4 2 1 36 36 H 1.08004 * 126.61358 * 0.02961 * 9 8 6 37 37 H 1.08000 * 120.02988 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.96868 * 180.30557 * 13 12 11 39 39 H 1.08005 * 119.93688 * 179.70030 * 14 13 12 40 40 H 1.08002 * 119.97022 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.03369 * 180.02562 * 16 15 14 42 42 H 1.08002 * 125.49463 * 180.02562 * 17 10 9 43 43 H 1.09006 * 109.88301 * 120.47721 * 19 5 4 44 44 H 1.09003 * 109.88253 * 241.48112 * 19 5 4 45 45 H 0.97005 * 120.00849 * 271.48063 * 22 20 19 46 46 H 0.97002 * 120.00046 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5610 1.5944 7 8 4.3003 -1.4995 2.8002 8 6 5.7417 -1.9833 1.0311 9 6 6.8537 -2.3327 1.7406 10 7 7.8151 -2.6525 0.8314 11 6 9.1225 -3.0692 1.1199 12 6 9.5414 -3.1819 2.4387 13 6 10.8280 -3.5981 2.7198 14 6 11.7022 -3.8909 1.6893 15 6 11.2894 -3.7745 0.3747 16 6 10.0022 -3.3643 0.0874 17 6 7.2766 -2.4944 -0.4086 18 7 6.0415 -2.1023 -0.2876 19 6 3.4674 -1.2743 -0.6957 20 6 2.0861 -0.8083 -1.2020 21 1 1.4468 -1.6636 -1.4204 22 7 2.2286 0.0488 -2.3815 23 6 2.1999 -0.5013 -3.6352 24 1 2.0726 -1.5672 -3.7544 25 6 2.3344 0.3108 -4.7529 26 7 2.4900 1.6097 -4.6076 27 14 2.2959 -0.4398 -6.4630 28 1 2.1119 -1.9093 -6.3546 29 1 1.1694 0.1441 -7.2346 30 1 3.5752 -0.1507 -7.1594 31 1 -0.3633 0.4756 0.9110 32 1 -0.3633 -1.0268 -0.0436 33 1 -0.3634 0.5511 -0.8674 34 1 2.1560 -0.1713 2.0837 35 1 1.4509 -1.6689 1.4042 36 1 6.9518 -2.3525 2.8160 37 1 8.8606 -2.9483 3.2439 38 1 11.1530 -3.6907 3.7456 39 1 12.7093 -4.2116 1.9115 40 1 11.9743 -4.0043 -0.4282 41 1 9.6802 -3.2739 -0.9396 42 1 7.7899 -2.6710 -1.3424 43 1 4.2426 -0.6000 -1.0599 44 1 3.6678 -2.2892 -1.0393 45 1 2.3433 1.0061 -2.2746 46 1 2.5843 2.1772 -5.3886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054687683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:52 Heat of formation + Delta-G solvation = 79.059726 kcal Electronic energy + Delta-G solvation = -28534.725176 eV Core-core repulsion = 24618.959780 eV Total energy + Delta-G solvation = -3915.765395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.58316 -39.71849 -39.18825 -37.32880 -34.48442 -33.92832 -32.31606 -31.75071 -30.61220 -30.04673 -29.57093 -27.36383 -26.43470 -24.13718 -23.82313 -23.62695 -22.12426 -21.09136 -20.90918 -19.81493 -19.40778 -18.34552 -17.06046 -16.83671 -16.17819 -16.03113 -15.82614 -15.42626 -15.22524 -14.79452 -14.51641 -14.39783 -13.94546 -13.89186 -13.70742 -13.43209 -13.26638 -12.98229 -12.91996 -12.48700 -12.27176 -12.19434 -11.97168 -11.62704 -11.38008 -11.06339 -10.94184 -10.91106 -10.68954 -10.51499 -10.20841 -10.13282 -9.90348 -9.81069 -9.62736 -9.56783 -9.04127 -8.89428 -8.62443 -8.10922 -6.97834 -5.76240 -3.05561 0.40914 0.78381 1.73080 2.27666 2.42716 3.29288 3.37200 3.44345 3.50407 3.52287 3.69262 4.15569 4.27020 4.33555 4.48096 4.59835 4.63607 4.77270 4.82036 4.90047 5.13634 5.20432 5.27422 5.31267 5.34264 5.40937 5.50000 5.67273 5.76107 5.81516 5.89458 5.94585 6.00183 6.02595 6.04589 6.12282 6.21394 6.30243 6.37081 6.39447 6.59848 6.70817 6.74806 6.78844 6.93431 7.09619 7.67096 7.72617 7.94095 8.41165 8.48520 9.53273 10.08513 10.43670 11.46127 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.002840 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.467682 B = 9858.463807 C =12129.930911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.082 0.918 4 C 0.114 3.886 5 N -0.597 5.597 6 C 0.611 3.389 7 O -0.561 6.561 8 C -0.039 4.039 9 C 0.025 3.975 10 N -0.412 5.412 11 C 0.136 3.864 12 C -0.133 4.133 13 C -0.093 4.093 14 C -0.128 4.128 15 C -0.092 4.092 16 C -0.131 4.131 17 C 0.192 3.808 18 N -0.436 5.436 19 C 0.089 3.911 20 C 0.173 3.827 21 H 0.066 0.934 22 N -0.710 5.710 23 C -0.238 4.238 24 H 0.072 0.928 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.190 0.810 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.215 0.785 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.386 0.614 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.890 -10.866 14.284 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.101 0.899 4 C -0.008 4.008 5 N -0.328 5.328 6 C 0.399 3.601 7 O -0.440 6.440 8 C -0.166 4.166 9 C -0.110 4.110 10 N -0.091 5.091 11 C 0.043 3.957 12 C -0.153 4.153 13 C -0.111 4.111 14 C -0.147 4.147 15 C -0.110 4.110 16 C -0.151 4.151 17 C -0.090 4.090 18 N -0.152 5.152 19 C -0.037 4.037 20 C 0.061 3.939 21 H 0.084 0.916 22 N -0.350 5.350 23 C -0.370 4.370 24 H 0.090 0.910 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.737 3.263 28 H -0.205 1.205 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.207 0.793 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.231 0.769 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.220 0.780 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.279 -10.786 14.118 23.433 hybrid contribution 0.805 -0.213 -0.494 0.968 sum 16.084 -10.999 13.623 23.776 Atomic orbital electron populations 1.21592 0.93946 1.01748 1.01641 1.22665 0.96230 0.99816 0.94860 0.89919 1.22278 0.82589 0.98131 0.97844 1.48293 1.11381 1.64253 1.08836 1.16489 0.81460 0.77255 0.84898 1.90755 1.83053 1.56376 1.13860 1.20596 0.95495 1.10756 0.89779 1.22626 0.87999 1.03756 0.96591 1.43163 1.09062 1.48721 1.08140 1.17900 0.82777 1.00159 0.94855 1.20968 0.97641 1.02362 0.94333 1.21064 0.92542 0.97539 0.99965 1.21282 1.00183 1.00520 0.92694 1.21069 0.95000 0.97791 0.97175 1.20912 0.93767 1.01962 0.98473 1.25451 0.90875 1.03853 0.88825 1.70950 1.11696 1.15209 1.17394 1.23313 1.01876 1.02135 0.76326 1.21337 0.92169 0.93599 0.86792 0.91580 1.42337 1.86302 1.06182 1.00138 1.19297 1.41887 0.92545 0.83223 0.90989 1.24737 1.02734 0.95444 0.97838 1.69677 1.56645 1.02828 1.28792 0.86131 0.77116 0.78182 0.84836 1.20507 1.21958 1.21919 0.93308 0.92851 0.91445 0.90958 0.91587 0.79347 0.84925 0.84918 0.85292 0.84804 0.84724 0.76909 0.90195 0.91801 0.77964 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.29 37.16 0.35 -1.61 16 2 C -0.12 -1.95 3.27 -88.47 -0.29 -2.24 16 3 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 4 C 0.11 1.85 6.38 -2.53 -0.02 1.84 16 5 N -0.60 -10.87 3.33 -171.82 -0.57 -11.44 16 6 C 0.61 11.31 7.84 -12.57 -0.10 11.22 16 7 O -0.56 -11.12 17.14 5.25 0.09 -11.03 16 8 C -0.04 -0.64 6.82 -83.09 -0.57 -1.21 16 9 C 0.02 0.33 10.57 -16.29 -0.17 0.16 16 10 N -0.41 -4.78 2.97 -61.90 -0.18 -4.96 16 11 C 0.14 1.26 6.63 -83.59 -0.55 0.70 16 12 C -0.13 -1.05 9.46 -39.41 -0.37 -1.42 16 13 C -0.09 -0.56 10.04 -39.61 -0.40 -0.96 16 14 C -0.13 -0.71 10.04 -39.55 -0.40 -1.11 16 15 C -0.09 -0.54 10.04 -39.61 -0.40 -0.94 16 16 C -0.13 -0.98 9.46 -39.41 -0.37 -1.36 16 17 C 0.19 2.43 11.88 -89.67 -1.07 1.37 16 18 N -0.44 -7.18 8.75 -10.97 -0.10 -7.27 16 19 C 0.09 1.73 5.28 -3.07 -0.02 1.72 16 20 C 0.17 3.45 3.08 -66.10 -0.20 3.25 16 21 H 0.07 1.32 7.96 -51.93 -0.41 0.91 16 22 N -0.71 -17.39 5.15 -51.65 -0.27 -17.66 16 23 C -0.24 -6.46 9.96 -15.06 -0.15 -6.61 16 24 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 27 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.14 8.04 -51.93 -0.42 0.73 16 35 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 36 H 0.19 2.06 7.11 -52.48 -0.37 1.68 16 37 H 0.13 0.92 6.78 -52.49 -0.36 0.56 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.13 0.81 6.74 -52.49 -0.35 0.45 16 42 H 0.21 1.89 7.03 -52.49 -0.37 1.52 16 43 H 0.08 1.75 7.52 -51.93 -0.39 1.36 16 44 H 0.06 1.27 7.73 -51.93 -0.40 0.87 16 45 H 0.39 10.14 7.76 -40.82 -0.32 9.82 16 46 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -33.83 384.21 -10.66 -44.50 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.31 Total: 9.62 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -4.82 Total: 2.38 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -0.39 Total: -68.36 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.83 -10.66 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054687683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.556 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds