Wall clock time and date at job start Sat Apr 11 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.91386 * 2 1 4 4 C 1.54907 * 111.00149 * 236.10454 * 2 1 3 5 5 N 1.47430 * 104.83016 * 204.91642 * 4 2 1 6 6 C 1.34777 * 125.64775 * 204.09391 * 5 4 2 7 7 O 1.21589 * 120.00051 * 354.82082 * 6 5 4 8 8 C 1.47536 * 119.99741 * 174.82664 * 6 5 4 9 9 C 1.39584 * 120.21725 * 312.81569 * 8 6 5 10 10 C 1.37860 * 119.96481 * 179.76942 * 9 8 6 11 11 C 1.38574 * 120.41387 * 0.51153 * 10 9 8 12 12 C 1.37977 * 120.44142 * 359.73990 * 11 10 9 13 13 C 1.39243 * 120.02273 * 0.02562 * 12 11 10 14 14 C 1.48174 * 120.20287 * 180.02562 * 13 12 11 15 15 C 1.40981 * 126.25157 * 130.00256 * 14 13 12 16 16 N 1.30620 * 108.06488 * 179.97438 * 15 14 13 17 17 N 1.40006 * 108.57736 * 359.97438 * 16 15 14 18 18 H 0.96995 * 125.86663 * 179.97438 * 17 16 15 19 19 C 1.34695 * 108.26538 * 359.73192 * 17 16 15 20 20 C 1.47026 * 108.70220 * 24.12434 * 5 4 2 21 21 C 1.54324 * 107.27013 * 358.94501 * 20 5 4 22 22 H 1.08991 * 110.72216 * 96.35085 * 21 20 5 23 23 N 1.46507 * 110.71730 * 219.44187 * 21 20 5 24 24 C 1.36929 * 120.00156 * 273.54814 * 23 21 20 25 25 H 1.08003 * 120.00020 * 359.97438 * 24 23 21 26 26 C 1.38806 * 120.00243 * 180.02562 * 24 23 21 27 27 N 1.31625 * 119.99863 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00179 * 180.27215 * 26 24 23 29 29 H 1.48501 * 109.47173 * 179.72545 * 28 26 24 30 30 H 1.48497 * 109.47020 * 299.72530 * 28 26 24 31 31 H 1.48501 * 109.46868 * 59.72638 * 28 26 24 32 32 H 1.09002 * 109.47362 * 296.09788 * 1 2 3 33 33 H 1.09003 * 109.47460 * 56.09696 * 1 2 3 34 34 H 1.09000 * 109.47276 * 176.09474 * 1 2 3 35 35 H 1.08998 * 110.37148 * 86.07572 * 4 2 1 36 36 H 1.09004 * 110.45883 * 323.79539 * 4 2 1 37 37 H 1.08001 * 120.01786 * 0.02562 * 9 8 6 38 38 H 1.07997 * 119.79689 * 180.24762 * 10 9 8 39 39 H 1.07993 * 119.78096 * 179.76503 * 11 10 9 40 40 H 1.07998 * 119.98771 * 179.97438 * 12 11 10 41 41 H 1.08000 * 125.97138 * 359.97438 * 15 14 13 42 42 H 1.08005 * 126.20420 * 180.26488 * 19 17 16 43 43 H 1.09000 * 109.87951 * 239.52259 * 20 5 4 44 44 H 1.09003 * 110.00956 * 118.43262 * 20 5 4 45 45 H 0.97006 * 119.99791 * 93.54581 * 23 21 20 46 46 H 0.97005 * 119.99752 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0851 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4476 -1.5614 -1.5942 7 8 4.2737 -1.5912 -2.7972 8 6 5.7757 -1.8741 -1.0328 9 6 6.3410 -1.0452 -0.0624 10 6 7.5802 -1.3449 0.4620 11 6 8.2761 -2.4604 0.0244 12 6 7.7356 -3.2885 -0.9379 13 6 6.4831 -3.0057 -1.4766 14 6 5.8986 -3.8926 -2.5097 15 6 4.6009 -4.4435 -2.4983 16 7 4.4586 -5.1672 -3.5764 17 7 5.6475 -5.1082 -4.3134 18 1 5.8155 -5.5551 -5.1577 19 6 6.5160 -4.3199 -3.6511 20 6 3.4674 -1.2741 0.6959 21 6 2.0861 -0.8080 1.2021 22 1 1.4479 -1.6632 1.4238 23 7 2.2286 0.0495 2.3815 24 6 2.3034 -0.5094 3.6293 25 1 2.2569 -1.5823 3.7442 26 6 2.4379 0.3030 4.7467 27 7 2.4931 1.6106 4.6069 28 14 2.5476 -0.4598 6.4484 29 1 2.6925 0.6140 7.4638 30 1 1.3125 -1.2372 6.7229 31 1 3.7250 -1.3626 6.5111 32 1 -0.3634 0.4521 0.9229 33 1 -0.3634 0.5732 -0.8529 34 1 -0.3634 -1.0253 -0.0700 35 1 2.1558 -0.1718 -2.0837 36 1 1.4523 -1.6703 -1.4044 37 1 5.8061 -0.1718 0.2804 38 1 8.0133 -0.7039 1.2156 39 1 9.2478 -2.6834 0.4395 40 1 8.2845 -4.1557 -1.2739 41 1 3.8547 -4.2934 -1.7321 42 1 7.5198 -4.0730 -3.9640 43 1 4.2426 -0.5998 1.0598 44 1 3.6662 -2.2884 1.0422 45 1 2.2700 1.0131 2.2784 46 1 2.5874 2.1783 5.3878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054718788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:00 Heat of formation + Delta-G solvation = 86.198005 kcal Electronic energy + Delta-G solvation = -29598.967997 eV Core-core repulsion = 25683.512141 eV Total energy + Delta-G solvation = -3915.455856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30027 -40.02476 -38.49980 -37.25285 -34.06541 -32.71378 -32.54400 -31.39374 -31.02858 -30.60012 -28.59750 -27.49083 -26.32596 -24.16567 -23.30475 -23.15620 -21.77064 -21.30977 -20.37924 -19.89450 -19.33856 -18.06478 -17.13281 -17.04230 -15.99183 -15.94991 -15.52818 -15.08723 -14.63671 -14.43650 -14.36715 -14.18007 -13.71919 -13.62013 -13.42434 -13.19858 -13.06965 -12.98966 -12.66896 -12.47617 -12.29152 -12.09474 -11.77657 -11.59904 -11.15376 -11.13852 -10.96350 -10.78390 -10.71669 -10.59356 -10.28118 -9.97580 -9.81363 -9.73895 -9.65357 -9.27016 -9.02683 -8.89398 -8.24887 -8.11920 -7.09933 -5.85646 -3.16333 0.98150 1.27219 1.87900 2.77200 2.79142 2.95927 3.27163 3.39617 3.45065 3.45169 3.85387 4.50869 4.58229 4.67131 4.76116 4.88628 5.00395 5.05767 5.11993 5.17173 5.23759 5.40145 5.41914 5.49376 5.56681 5.64599 5.72325 5.79533 5.83333 5.89003 5.92356 5.99857 6.04021 6.21860 6.26790 6.29709 6.38237 6.44053 6.47393 6.53297 6.55296 6.59318 6.66436 6.88912 6.90197 7.13429 7.56313 7.62704 7.83493 8.31602 8.42456 9.43950 9.97566 10.32717 11.36135 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.003477 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.797933 B = 8050.732899 C = 9356.161772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.609 5.609 6 C 0.572 3.428 7 O -0.537 6.537 8 C -0.114 4.114 9 C -0.078 4.078 10 C -0.125 4.125 11 C -0.099 4.099 12 C -0.122 4.122 13 C 0.039 3.961 14 C -0.193 4.193 15 C 0.087 3.913 16 N -0.295 5.295 17 N -0.476 5.476 18 H 0.438 0.562 19 C 0.076 3.924 20 C 0.070 3.930 21 C 0.177 3.823 22 H 0.066 0.934 23 N -0.711 5.711 24 C -0.247 4.247 25 H 0.072 0.928 26 C -0.007 4.007 27 N -0.930 5.930 28 Si 0.906 3.094 29 H -0.291 1.291 30 H -0.285 1.285 31 H -0.285 1.285 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.176 0.824 42 H 0.177 0.823 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 -9.232 -14.389 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.007 4.007 5 N -0.342 5.342 6 C 0.361 3.639 7 O -0.415 6.415 8 C -0.118 4.118 9 C -0.096 4.096 10 C -0.143 4.143 11 C -0.118 4.118 12 C -0.141 4.141 13 C 0.037 3.963 14 C -0.205 4.205 15 C -0.101 4.101 16 N -0.116 5.116 17 N -0.183 5.183 18 H 0.282 0.718 19 C -0.072 4.072 20 C -0.055 4.055 21 C 0.065 3.935 22 H 0.084 0.916 23 N -0.351 5.351 24 C -0.378 4.378 25 H 0.089 0.911 26 C -0.204 4.204 27 N -0.577 5.577 28 Si 0.737 3.263 29 H -0.217 1.217 30 H -0.212 1.212 31 H -0.211 1.211 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.193 0.807 42 H 0.194 0.806 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.221 0.779 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.499 -10.098 -15.545 20.392 hybrid contribution 0.876 0.367 1.164 1.502 sum 9.374 -9.731 -14.381 19.733 Atomic orbital electron populations 1.21609 0.93876 1.01566 1.02061 1.22620 0.96315 0.99756 0.94629 0.89834 1.22249 0.82784 0.98042 0.97631 1.48473 1.11791 1.65873 1.08092 1.17854 0.83370 0.77020 0.85701 1.90777 1.83674 1.52711 1.14292 1.19899 0.95395 0.97030 0.99437 1.21390 0.95514 0.99055 0.93661 1.21142 0.94942 0.97880 1.00383 1.21197 0.99682 0.94462 0.96415 1.21077 0.94900 1.00118 0.97985 1.17933 0.93022 0.91826 0.93511 1.18724 0.95660 1.07806 0.98268 1.23826 0.95819 0.94633 0.95787 1.77177 1.03462 1.24502 1.06490 1.46088 1.10658 1.40163 1.21359 0.71806 1.22479 0.96724 0.94716 0.93280 1.23451 1.03210 1.01458 0.77418 1.21252 0.91614 0.93808 0.86858 0.91630 1.42346 1.86979 1.05263 1.00528 1.19188 1.43141 0.91886 0.83593 0.91051 1.24741 1.02383 0.95333 0.97911 1.69651 1.56507 1.02269 1.29289 0.86290 0.77978 0.77873 0.84168 1.21695 1.21179 1.21132 0.91336 0.93204 0.92825 0.91083 0.91641 0.84865 0.85389 0.85741 0.85713 0.80665 0.80565 0.90502 0.92312 0.77880 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.31 37.16 0.35 -1.51 16 2 C -0.11 -1.76 3.25 -88.48 -0.29 -2.04 16 3 H 0.08 1.37 8.00 -51.93 -0.42 0.95 16 4 C 0.12 1.73 6.36 -2.53 -0.02 1.72 16 5 N -0.61 -9.79 3.33 -171.74 -0.57 -10.36 16 6 C 0.57 9.60 6.10 -12.47 -0.08 9.53 16 7 O -0.54 -10.31 15.54 5.29 0.08 -10.23 16 8 C -0.11 -1.71 5.35 -104.70 -0.56 -2.27 16 9 C -0.08 -1.09 8.39 -39.22 -0.33 -1.42 16 10 C -0.13 -1.48 10.02 -39.60 -0.40 -1.88 16 11 C -0.10 -1.03 10.02 -39.55 -0.40 -1.43 16 12 C -0.12 -1.33 9.70 -39.30 -0.38 -1.71 16 13 C 0.04 0.52 5.78 -104.54 -0.60 -0.08 16 14 C -0.19 -2.56 4.54 -105.36 -0.48 -3.03 16 15 C 0.09 1.26 10.15 -17.03 -0.17 1.09 16 16 N -0.29 -4.16 12.66 30.82 0.39 -3.77 16 17 N -0.48 -4.95 7.32 30.65 0.22 -4.73 16 18 H 0.44 2.88 8.96 -182.67 -1.64 1.24 16 19 C 0.08 0.79 11.88 -16.88 -0.20 0.59 16 20 C 0.07 1.19 5.79 -3.06 -0.02 1.18 16 21 C 0.18 3.21 3.06 -66.09 -0.20 3.01 16 22 H 0.07 1.21 8.02 -51.93 -0.42 0.80 16 23 N -0.71 -16.22 5.18 -51.66 -0.27 -16.49 16 24 C -0.25 -6.35 9.98 -15.07 -0.15 -6.50 16 25 H 0.07 1.79 7.83 -52.48 -0.41 1.37 16 26 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 27 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 28 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 30 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 31 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 36 H 0.07 0.93 7.99 -51.93 -0.41 0.51 16 37 H 0.13 1.93 6.41 -52.49 -0.34 1.59 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.18 2.52 7.91 -52.49 -0.42 2.10 16 42 H 0.18 1.15 8.06 -52.48 -0.42 0.73 16 43 H 0.08 1.39 5.65 -51.93 -0.29 1.09 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.39 9.48 7.71 -40.82 -0.31 9.16 16 46 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -32.36 382.74 -10.28 -42.64 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -7.59 Total: 11.73 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -4.02 Total: -5.06 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.50 Total: -61.18 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.36 -10.28 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054718788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.838 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds